Wall clock time and date at job start Mon Mar 30 2020 06:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.35357 * 124.73526 * 217.15747 * 3 2 1 5 5 C 1.39780 * 115.42678 * 179.97438 * 4 3 2 6 6 C 1.42307 * 128.35486 * 179.97438 * 5 4 3 7 7 C 1.35030 * 120.88025 * 180.02562 * 6 5 4 8 8 C 1.41388 * 120.40018 * 359.63511 * 7 6 5 9 9 C 1.40863 * 120.18487 * 180.33150 * 8 7 6 10 10 H 1.07993 * 119.99686 * 205.89800 * 9 8 7 11 11 C 1.40022 * 119.99568 * 25.90712 * 9 8 7 12 12 N 1.30789 * 120.00449 * 15.25413 * 11 9 8 13 13 Si 1.86806 * 119.99569 * 195.25648 * 11 9 8 14 14 H 1.48505 * 109.46975 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46763 * 119.99872 * 13 11 9 16 16 H 1.48498 * 109.47208 * 239.99994 * 13 11 9 17 17 C 1.40349 * 119.62826 * 0.64983 * 8 7 6 18 18 C 1.50700 * 119.98360 * 179.68399 * 17 8 7 19 19 O 1.42899 * 109.47368 * 269.72488 * 18 17 8 20 20 C 1.38966 * 120.02649 * 359.40614 * 17 8 7 21 21 S 1.75462 * 124.74280 * 37.14053 * 3 2 1 22 22 H 1.07994 * 122.28685 * 359.96140 * 4 3 2 23 23 H 1.08000 * 119.55768 * 0.03815 * 6 5 4 24 24 H 1.07995 * 119.80331 * 179.97438 * 7 6 5 25 25 H 0.96996 * 120.00135 * 180.02562 * 12 11 9 26 26 H 1.09001 * 109.47417 * 149.72521 * 18 17 8 27 27 H 1.09001 * 109.47239 * 29.72395 * 18 17 8 28 28 H 0.96700 * 114.00021 * 59.99502 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3388 0.8875 0.6719 5 6 4.7183 0.7076 0.5358 6 6 5.7699 1.4721 1.1144 7 6 7.0628 1.1619 0.8790 8 6 7.3962 0.0619 0.0556 9 6 8.7465 -0.2619 -0.1813 10 1 9.0258 -0.7857 -1.0834 11 6 9.7263 0.0952 0.7531 12 7 9.3779 0.4523 1.9620 13 14 11.5312 0.0616 0.2727 14 1 11.6591 -0.3748 -1.1410 15 1 12.1096 1.4207 0.4260 16 1 12.2597 -0.8884 1.1513 17 6 6.3742 -0.7015 -0.5298 18 6 6.7205 -1.8713 -1.4145 19 8 6.8306 -1.4282 -2.7687 20 6 5.0432 -0.3826 -0.2893 21 16 3.5684 -1.1483 -0.8705 22 1 2.9169 1.6801 1.2719 23 1 5.5306 2.3115 1.7504 24 1 7.8470 1.7542 1.3267 25 1 10.0566 0.7001 2.6091 26 1 5.9376 -2.6262 -1.3418 27 1 7.6700 -2.3004 -1.0944 28 1 7.5098 -0.7542 -2.9080 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396229889.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:10 Heat of formation + Delta-G solvation = -10.651197 kcal Electronic energy + Delta-G solvation = -15943.967156 eV Core-core repulsion = 13242.967296 eV Total energy + Delta-G solvation = -2700.999860 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29994 -38.14010 -37.32055 -36.52138 -34.59905 -32.15791 -30.88327 -27.88385 -26.55311 -24.55440 -22.98424 -21.41399 -19.88935 -18.94406 -17.70614 -17.58476 -16.67779 -16.23697 -15.91164 -15.35846 -15.19746 -14.95106 -14.73808 -14.18094 -13.98451 -13.89985 -13.71167 -13.24442 -13.01753 -12.79324 -12.53343 -12.40487 -11.97170 -11.80050 -11.60812 -11.23394 -11.01677 -10.62673 -10.25833 -9.18931 -8.90721 -8.43976 -6.46541 -0.33161 0.52827 0.91779 1.14713 1.17886 1.45431 1.58804 1.60267 2.00450 2.15732 2.30225 2.66735 3.06986 3.47207 3.89380 4.16258 4.41853 4.54424 4.68829 4.72517 4.92293 4.96718 5.04244 5.05977 5.33265 5.43572 5.81274 5.82671 5.93751 6.07735 6.42988 6.46663 6.67015 6.77478 6.95387 8.07083 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.034055 B = 0.006099 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.993688 B = 4589.906411 C = 5279.532532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.317 3.683 3 C -0.235 4.235 4 C 0.019 3.981 5 C -0.230 4.230 6 C -0.056 4.056 7 C -0.159 4.159 8 C 0.126 3.874 9 C -0.434 4.434 10 H 0.100 0.900 11 C 0.039 3.961 12 N -0.787 5.787 13 Si 0.985 3.015 14 H -0.251 1.251 15 H -0.264 1.264 16 H -0.269 1.269 17 C -0.263 4.263 18 C 0.146 3.854 19 O -0.581 6.581 20 C -0.045 4.045 21 S 0.093 5.907 22 H 0.159 0.841 23 H 0.127 0.873 24 H 0.122 0.878 25 H 0.300 0.700 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 0.837 -1.034 3.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C 0.004 3.996 3 C -0.353 4.353 4 C -0.016 4.016 5 C -0.235 4.235 6 C -0.077 4.077 7 C -0.178 4.178 8 C 0.119 3.881 9 C -0.461 4.461 10 H 0.118 0.882 11 C -0.182 4.182 12 N -0.409 5.409 13 Si 0.805 3.195 14 H -0.174 1.174 15 H -0.188 1.188 16 H -0.193 1.193 17 C -0.273 4.273 18 C 0.069 3.931 19 O -0.388 6.388 20 C -0.161 4.161 21 S 0.356 5.644 22 H 0.177 0.823 23 H 0.145 0.855 24 H 0.140 0.860 25 H 0.112 0.888 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 1.050 -0.751 -1.791 2.208 hybrid contribution 1.765 1.575 1.209 2.656 sum 2.815 0.824 -0.582 2.990 Atomic orbital electron populations 1.81191 1.11879 1.10328 1.11870 1.24454 0.90997 0.92264 0.91884 1.19085 0.87847 1.09840 1.18532 1.20384 0.91160 0.95953 0.94072 1.17854 0.92981 1.02928 1.09765 1.20689 0.91591 0.97945 0.97456 1.21087 0.95608 0.98686 1.02419 1.17749 0.92826 0.89042 0.88471 1.20148 0.91227 1.29474 1.05283 0.88206 1.26912 1.06512 0.91176 0.93586 1.69789 1.39295 1.27730 1.04104 0.85069 0.74929 0.79229 0.80281 1.17367 1.18842 1.19347 1.19768 0.89838 1.04551 1.13141 1.20664 1.00113 0.92505 0.79852 1.86399 1.62654 1.62111 1.27626 1.22586 0.96526 0.98035 0.98992 1.83657 0.94351 1.33512 1.52866 0.82340 0.85545 0.86046 0.88812 0.90866 0.92495 0.76809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.55 18.54 19.00 0.35 -17.19 15 2 C 0.32 11.18 15.77 88.33 1.39 12.57 15 3 C -0.24 -8.30 6.23 22.85 0.14 -8.16 15 4 C 0.02 0.64 10.05 21.98 0.22 0.86 15 5 C -0.23 -9.00 5.87 -21.34 -0.13 -9.13 15 6 C -0.06 -2.18 9.99 22.54 0.23 -1.95 15 7 C -0.16 -6.77 8.57 22.31 0.19 -6.58 15 8 C 0.13 5.47 5.56 -21.35 -0.12 5.35 15 9 C -0.43 -17.89 8.10 23.35 0.19 -17.70 15 10 H 0.10 3.81 6.72 -2.91 -0.02 3.79 15 11 C 0.04 1.53 5.18 85.28 0.44 1.98 15 12 N -0.79 -32.47 10.88 21.84 0.24 -32.24 15 13 Si 0.98 29.63 29.59 68.60 2.03 31.66 15 14 H -0.25 -7.33 7.11 99.48 0.71 -6.62 15 15 H -0.26 -7.78 7.11 99.48 0.71 -7.08 15 16 H -0.27 -8.04 7.11 99.48 0.71 -7.33 15 17 C -0.26 -11.00 5.56 -19.18 -0.11 -11.11 15 18 C 0.15 5.49 6.42 71.24 0.46 5.94 15 19 O -0.58 -21.00 13.67 -148.98 -2.04 -23.03 15 20 C -0.04 -1.84 6.29 23.00 0.14 -1.69 15 21 S 0.09 3.41 22.49 -56.49 -1.27 2.14 15 22 H 0.16 4.39 8.06 -2.91 -0.02 4.37 15 23 H 0.13 4.12 8.06 -2.91 -0.02 4.09 15 24 H 0.12 5.26 6.14 -2.91 -0.02 5.24 15 25 H 0.30 11.04 8.29 -92.71 -0.77 10.27 15 26 H 0.07 2.68 7.57 -2.39 -0.02 2.66 15 27 H 0.06 2.09 6.73 -2.39 -0.02 2.07 15 28 H 0.38 11.87 8.97 -74.06 -0.66 11.21 15 Total: -1.00 -48.54 270.62 2.94 -45.60 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.57 Total: 22.67 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 3.05 Total: -29.62 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.59 Total: -49.43 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -2.04 Total: -23.03 kcal Atomic # 14 Polarization: 29.63 SS G_CDS: 2.03 Total: 31.66 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.27 Total: 2.14 kcal Total: -48.54 2.94 -45.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229889.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.951 kcal (2) G-P(sol) polarization free energy of solvation -48.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds