Wall clock time and date at job start Mon Mar 30 2020 06:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39174 * 120.07053 * 261.45205 * 3 2 1 5 5 C 1.39452 * 120.10147 * 179.97438 * 4 3 2 6 6 S 1.75789 * 130.12393 * 180.02562 * 5 4 3 7 7 C 1.69968 * 93.22647 * 180.02562 * 6 5 4 8 8 C 1.36546 * 111.97144 * 359.97438 * 7 6 5 9 9 C 1.40856 * 123.27358 * 180.26829 * 8 7 6 10 10 H 1.08005 * 119.99539 * 153.12003 * 9 8 7 11 11 C 1.39714 * 120.00203 * 333.12340 * 9 8 7 12 12 N 1.31066 * 120.00052 * 350.60157 * 11 9 8 13 13 Si 1.86806 * 119.99953 * 170.60953 * 11 9 8 14 14 H 1.48503 * 109.47070 * 89.99877 * 13 11 9 15 15 H 1.48497 * 109.46773 * 209.99694 * 13 11 9 16 16 H 1.48494 * 109.47009 * 329.99811 * 13 11 9 17 17 C 1.39593 * 119.68386 * 0.03954 * 5 4 3 18 18 C 1.40765 * 119.46060 * 359.97438 * 17 5 4 19 19 C 1.50697 * 119.67803 * 179.97438 * 18 17 5 20 20 O 1.42892 * 109.47565 * 179.97438 * 19 18 17 21 21 C 1.36070 * 120.65284 * 359.97438 * 18 17 5 22 22 H 1.08001 * 119.95003 * 359.97438 * 4 3 2 23 23 H 1.07999 * 124.01472 * 179.97438 * 7 6 5 24 24 H 0.96994 * 120.00214 * 179.97438 * 12 11 9 25 25 H 1.09007 * 109.46732 * 300.00330 * 19 18 17 26 26 H 1.09003 * 109.46769 * 59.99518 * 19 18 17 27 27 H 0.96694 * 114.00431 * 179.97438 * 20 19 18 28 28 H 1.07999 * 119.87686 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2653 0.1800 1.1910 5 6 4.6598 0.1802 1.1919 6 16 5.7918 0.3798 2.5218 7 6 7.1517 0.2293 1.5134 8 6 6.8008 0.0332 0.2084 9 6 7.7403 -0.1275 -0.8287 10 1 7.4772 -0.6882 -1.7135 11 6 9.0125 0.4383 -0.7127 12 7 9.2737 1.2684 0.2673 13 14 10.3411 0.0119 -1.9548 14 1 10.2885 0.9730 -3.0856 15 1 11.6724 0.0887 -1.3014 16 1 10.1185 -1.3649 -2.4646 17 6 5.3518 0.0006 -0.0071 18 6 4.6306 -0.1791 -1.2025 19 6 5.3727 -0.3729 -2.4997 20 8 4.4348 -0.5340 -3.5656 21 6 3.2699 -0.1797 -1.1984 22 1 2.7256 0.3192 2.1161 23 1 8.1721 0.2825 1.8631 24 1 10.1570 1.6609 0.3481 25 1 5.9982 0.4985 -2.6941 26 1 5.9996 -1.2618 -2.4303 27 1 4.8430 -0.6631 -4.4326 28 1 2.7292 -0.3190 -2.1228 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396230161.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:44 Heat of formation + Delta-G solvation = 9.121217 kcal Electronic energy + Delta-G solvation = -16061.166046 eV Core-core repulsion = 13361.023583 eV Total energy + Delta-G solvation = -2700.142463 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.31741 -36.61184 -36.16220 -34.89284 -32.46126 -31.26513 -28.85848 -26.74217 -24.92987 -23.41339 -21.48056 -19.97071 -18.17526 -17.36519 -16.44009 -16.02408 -15.10599 -14.74314 -14.55206 -14.41846 -13.79678 -13.58033 -13.10816 -13.06499 -12.45146 -12.35728 -12.07557 -11.62653 -11.53658 -11.22510 -11.16397 -10.79904 -10.45804 -10.31247 -10.11418 -9.89132 -9.45279 -9.27146 -8.55294 -7.59434 -6.88087 -6.76942 -4.46454 1.12183 1.79978 2.56092 2.82990 3.00445 3.01426 3.03052 3.10748 3.57841 3.76805 3.87971 4.29677 4.32978 4.56350 5.08449 5.24387 5.55398 5.79857 5.82568 5.91766 6.06145 6.23051 6.34777 6.67781 6.74480 6.95724 7.05330 7.25106 7.50728 7.76478 7.79527 7.93349 8.26710 8.60937 8.73403 10.17932 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.022138 B = 0.007666 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.500654 B = 3651.584936 C = 4844.251837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.276 3.724 3 C -0.050 4.050 4 C -0.034 4.034 5 C -0.155 4.155 6 S 0.059 5.941 7 C -0.330 4.330 8 C 0.073 3.927 9 C -0.446 4.446 10 H 0.083 0.917 11 C 0.070 3.930 12 N -0.801 5.801 13 Si 0.909 3.091 14 H -0.270 1.270 15 H -0.277 1.277 16 H -0.262 1.262 17 C -0.028 4.028 18 C -0.047 4.047 19 C 0.118 3.882 20 O -0.580 6.580 21 C -0.078 4.078 22 H 0.124 0.876 23 H 0.162 0.838 24 H 0.279 0.721 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.378 0.622 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 -1.950 -2.646 3.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.038 4.038 3 C -0.057 4.057 4 C -0.060 4.060 5 C -0.271 4.271 6 S 0.324 5.676 7 C -0.466 4.466 8 C 0.065 3.935 9 C -0.479 4.479 10 H 0.101 0.899 11 C -0.146 4.146 12 N -0.428 5.428 13 Si 0.733 3.267 14 H -0.196 1.196 15 H -0.202 1.202 16 H -0.186 1.186 17 C -0.040 4.040 18 C -0.049 4.049 19 C 0.041 3.959 20 O -0.386 6.386 21 C -0.102 4.102 22 H 0.142 0.858 23 H 0.179 0.821 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.224 0.776 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.657 -1.489 -0.469 3.976 hybrid contribution 1.930 -0.266 -2.405 3.095 sum -1.727 -1.755 -2.874 3.785 Atomic orbital electron populations 1.81163 1.12174 1.10763 1.08335 1.25757 0.92621 0.92620 0.92846 1.15636 0.83663 1.11347 0.95011 1.20352 0.91434 0.97863 0.96326 1.22444 0.96314 1.09455 0.98867 1.82031 0.96487 1.78509 1.10576 1.24464 1.00338 1.26478 0.95355 1.17316 0.87319 0.95784 0.93127 1.19127 0.95887 1.29785 1.03119 0.89939 1.25759 0.99322 0.93224 0.96292 1.69828 1.22301 1.21723 1.28954 0.86293 0.79872 0.79943 0.80562 1.19575 1.20188 1.18582 1.19710 0.94949 0.98200 0.91181 1.18980 0.92601 1.00320 0.93020 1.21196 0.89434 1.01352 0.83869 1.86365 1.37129 1.96178 1.18924 1.20237 0.93470 1.00232 0.96262 0.85802 0.82071 0.91063 0.90768 0.91302 0.77574 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.96 18.54 41.84 0.78 -7.18 15 2 C 0.28 4.60 15.32 -22.47 -0.34 4.25 15 3 C -0.05 -0.85 5.73 -106.94 -0.61 -1.46 15 4 C -0.03 -0.58 9.78 -38.78 -0.38 -0.96 15 5 C -0.16 -3.09 6.43 -38.62 -0.25 -3.34 15 6 S 0.06 1.18 22.96 -107.50 -2.47 -1.28 15 7 C -0.33 -7.79 9.48 30.12 0.29 -7.51 15 8 C 0.07 1.73 5.65 -106.18 -0.60 1.14 15 9 C -0.45 -10.41 8.00 -38.04 -0.30 -10.72 15 10 H 0.08 1.76 4.88 -52.48 -0.26 1.51 15 11 C 0.07 1.62 5.36 -17.33 -0.09 1.53 15 12 N -0.80 -19.45 10.97 55.54 0.61 -18.84 15 13 Si 0.91 17.28 29.57 -169.99 -5.03 12.25 15 14 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 15 H -0.28 -5.29 7.11 56.52 0.40 -4.88 15 16 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 17 C -0.03 -0.60 6.00 -105.10 -0.63 -1.23 15 18 C -0.05 -0.90 5.89 -104.45 -0.62 -1.51 15 19 C 0.12 1.97 5.61 36.00 0.20 2.17 15 20 O -0.58 -8.28 12.07 -35.23 -0.43 -8.71 15 21 C -0.08 -1.36 9.01 -39.68 -0.36 -1.71 15 22 H 0.12 1.82 8.06 -52.49 -0.42 1.40 15 23 H 0.16 4.06 6.51 -52.49 -0.34 3.72 15 24 H 0.28 6.25 8.30 -40.82 -0.34 5.91 15 25 H 0.07 1.28 7.54 -51.93 -0.39 0.89 15 26 H 0.07 1.14 6.62 -51.93 -0.34 0.80 15 27 H 0.38 3.50 9.12 45.56 0.42 3.91 15 28 H 0.13 2.20 6.92 -52.49 -0.36 1.84 15 LS Contribution 265.62 15.07 4.00 4.00 Total: -1.00 -26.13 265.62 -7.07 -33.19 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -0.84 Total: 5.93 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -3.70 Total: -19.36 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 1.38 Total: -26.02 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.43 Total: -8.71 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.47 Total: -1.28 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.13 -7.07 -33.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396230161.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.315 kcal (2) G-P(sol) polarization free energy of solvation -26.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds