Wall clock time and date at job start Mon Mar 30 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.33829 * 123.02086 * 338.84207 * 3 2 1 5 5 S 1.70037 * 112.19444 * 179.97438 * 4 3 2 6 6 C 1.75768 * 92.96834 * 0.02562 * 5 4 3 7 7 C 1.39167 * 109.85619 * 0.02562 * 6 5 4 8 8 C 1.40867 * 119.29191 * 180.02562 * 7 6 5 9 9 C 1.37973 * 120.83692 * 359.97438 * 8 7 6 10 10 C 1.37810 * 120.67141 * 359.73856 * 9 8 7 11 11 C 1.50698 * 120.05190 * 180.27647 * 10 9 8 12 12 O 1.42904 * 109.46844 * 0.25865 * 11 10 9 13 13 C 1.40436 * 119.90051 * 0.53449 * 10 9 8 14 14 C 1.40934 * 120.12545 * 179.74524 * 13 10 9 15 15 H 1.08003 * 120.00325 * 37.78212 * 14 13 10 16 16 C 1.39948 * 119.99846 * 217.77951 * 14 13 10 17 17 N 1.30852 * 120.00046 * 24.84530 * 16 14 13 18 18 Si 1.86806 * 119.99923 * 204.84071 * 16 14 13 19 19 H 1.48493 * 109.47414 * 270.00113 * 18 16 14 20 20 H 1.48499 * 109.46926 * 30.00371 * 18 16 14 21 21 H 1.48508 * 109.46848 * 150.00122 * 18 16 14 22 22 H 1.08008 * 123.90095 * 0.02562 * 4 3 2 23 23 H 1.07997 * 119.57818 * 179.97438 * 8 7 6 24 24 H 1.08001 * 119.66226 * 180.02562 * 9 8 7 25 25 H 1.08999 * 109.46969 * 120.25152 * 11 10 9 26 26 H 1.09001 * 109.47375 * 240.25767 * 11 10 9 27 27 H 0.96695 * 113.99740 * 180.02562 * 12 11 10 28 28 H 0.96997 * 119.99871 * 5.55383 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2977 -1.0455 0.4050 5 16 4.9677 -0.7472 0.2891 6 6 4.7267 0.8767 -0.3390 7 6 3.3653 1.1463 -0.4422 8 6 2.9460 2.4005 -0.9276 9 6 3.8664 3.3588 -1.2991 10 6 5.2184 3.1115 -1.1982 11 6 6.2115 4.1706 -1.6020 12 8 5.5120 5.3346 -2.0469 13 6 5.6693 1.8691 -0.7235 14 6 7.0508 1.6093 -0.6234 15 1 7.7260 2.3911 -0.3081 16 6 7.5479 0.3381 -0.9324 17 7 6.8850 -0.4437 -1.7459 18 14 9.1578 -0.2428 -0.1837 19 1 10.2839 0.1411 -1.0722 20 1 9.3405 0.3885 1.1479 21 1 9.1285 -1.7197 -0.0316 22 1 2.8748 -1.9725 0.7633 23 1 1.8906 2.6145 -1.0101 24 1 3.5238 4.3142 -1.6685 25 1 6.8368 4.4272 -0.7470 26 1 6.8379 3.7922 -2.4098 27 1 6.0898 6.0589 -2.3236 28 1 6.0925 -0.1136 -2.1974 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396230284.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:48 Heat of formation + Delta-G solvation = 0.473135 kcal Electronic energy + Delta-G solvation = -16243.228531 eV Core-core repulsion = 13542.711059 eV Total energy + Delta-G solvation = -2700.517472 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.74183 -36.84623 -35.86637 -34.70188 -33.42857 -30.11250 -29.11871 -25.75569 -25.07539 -23.35979 -21.41401 -20.14563 -18.53184 -16.89924 -16.45083 -16.29748 -14.70814 -14.42930 -14.26014 -14.13140 -14.07708 -13.60697 -13.10487 -12.82497 -12.50688 -12.24571 -12.11251 -11.80617 -11.53328 -11.16481 -10.78986 -10.57184 -10.51689 -10.31906 -9.96739 -9.65380 -9.51392 -9.03017 -8.53430 -7.62858 -7.44651 -6.66009 -4.76552 1.29135 2.38125 2.38587 2.62254 2.88380 3.04522 3.11851 3.21534 3.24151 3.85420 3.89270 4.37384 4.69095 4.86968 4.99833 5.22013 5.88442 5.93946 6.11125 6.26768 6.30561 6.34771 6.47501 6.79610 6.98792 7.12369 7.41300 7.54818 7.57224 7.76047 7.90870 7.97028 8.18728 8.37873 8.51616 9.80659 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.010674 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.018390 B = 2622.600476 C = 4223.343803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.292 3.708 3 C -0.067 4.067 4 C -0.203 4.203 5 S 0.228 5.772 6 C -0.231 4.231 7 C -0.008 4.008 8 C -0.215 4.215 9 C -0.042 4.042 10 C -0.194 4.194 11 C 0.148 3.852 12 O -0.578 6.578 13 C 0.143 3.857 14 C -0.528 4.528 15 H 0.085 0.915 16 C 0.034 3.966 17 N -0.773 5.773 18 Si 1.055 2.945 19 H -0.275 1.275 20 H -0.272 1.272 21 H -0.268 1.268 22 H 0.160 0.840 23 H 0.096 0.904 24 H 0.111 0.889 25 H 0.042 0.958 26 H 0.048 0.952 27 H 0.369 0.631 28 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.570 1.032 1.887 4.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.024 4.024 3 C -0.088 4.088 4 C -0.344 4.344 5 S 0.499 5.501 6 C -0.347 4.347 7 C -0.015 4.015 8 C -0.237 4.237 9 C -0.061 4.061 10 C -0.199 4.199 11 C 0.071 3.929 12 O -0.382 6.382 13 C 0.137 3.863 14 C -0.556 4.556 15 H 0.103 0.897 16 C -0.189 4.189 17 N -0.396 5.396 18 Si 0.878 3.122 19 H -0.201 1.201 20 H -0.197 1.197 21 H -0.192 1.192 22 H 0.177 0.823 23 H 0.114 0.886 24 H 0.129 0.871 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.214 0.786 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.601 -1.633 2.453 4.653 hybrid contribution -1.582 2.445 -0.629 2.980 sum 2.019 0.812 1.823 2.839 Atomic orbital electron populations 1.81123 1.12050 1.09004 1.11123 1.25368 0.92187 0.92481 0.92350 1.15777 0.84590 0.96309 1.12164 1.25236 1.03418 1.01714 1.04022 1.83212 0.96221 1.09328 1.61337 1.22617 0.95429 1.00412 1.16264 1.18440 0.90659 0.92941 0.99494 1.20106 0.97719 0.93380 1.12481 1.20303 0.92546 0.97236 0.96020 1.19342 0.93095 0.96657 1.10809 1.20512 0.92250 0.83365 0.96727 1.86442 1.38074 1.26311 1.87393 1.16591 0.92105 0.88709 0.88871 1.20418 0.92693 0.99930 1.42516 0.89697 1.26972 1.04859 0.92650 0.94430 1.70453 1.15189 1.39043 1.14904 0.83742 0.73582 0.77761 0.77102 1.20060 1.19699 1.19192 0.82265 0.88587 0.87077 0.94017 0.93446 0.78588 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.21 18.54 41.84 0.78 -8.43 15 2 C 0.29 5.72 15.42 -22.47 -0.35 5.38 15 3 C -0.07 -1.32 5.82 -106.23 -0.62 -1.94 15 4 C -0.20 -3.61 10.55 29.18 0.31 -3.31 15 5 S 0.23 4.50 19.66 -107.50 -2.11 2.38 15 6 C -0.23 -5.25 5.25 -37.73 -0.20 -5.45 15 7 C -0.01 -0.18 6.03 -105.27 -0.63 -0.81 15 8 C -0.22 -4.71 9.88 -38.68 -0.38 -5.10 15 9 C -0.04 -0.91 9.33 -39.83 -0.37 -1.29 15 10 C -0.19 -4.34 5.93 -103.95 -0.62 -4.95 15 11 C 0.15 2.81 6.35 36.00 0.23 3.04 15 12 O -0.58 -9.75 12.13 -35.23 -0.43 -10.18 15 13 C 0.14 3.36 4.99 -106.54 -0.53 2.83 15 14 C -0.53 -12.09 8.11 -37.92 -0.31 -12.40 15 15 H 0.09 1.89 7.38 -52.48 -0.39 1.50 15 16 C 0.03 0.74 4.11 -17.33 -0.07 0.67 15 17 N -0.77 -17.98 11.49 55.55 0.64 -17.34 15 18 Si 1.06 19.16 30.00 -169.99 -5.10 14.06 15 19 H -0.27 -4.82 7.11 56.52 0.40 -4.42 15 20 H -0.27 -4.77 7.11 56.52 0.40 -4.36 15 21 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 22 H 0.16 2.29 8.06 -52.48 -0.42 1.86 15 23 H 0.10 1.99 8.06 -52.49 -0.42 1.56 15 24 H 0.11 2.29 6.98 -52.49 -0.37 1.92 15 25 H 0.04 0.76 7.83 -51.93 -0.41 0.35 15 26 H 0.05 0.90 8.14 -51.93 -0.42 0.47 15 27 H 0.37 4.14 9.12 45.56 0.42 4.55 15 28 H 0.30 7.33 7.09 -40.82 -0.29 7.04 15 LS Contribution 267.56 15.07 4.03 4.03 Total: -1.00 -25.90 267.56 -6.83 -32.73 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -1.10 Total: 6.07 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -3.54 Total: -23.33 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 1.41 Total: -25.77 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.43 Total: -10.18 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.10 Total: 14.06 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -2.11 Total: 2.38 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -25.90 -6.83 -32.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396230284.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.203 kcal (2) G-P(sol) polarization free energy of solvation -25.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds