Wall clock time and date at job start Mon Mar 30 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.33829 * 123.02086 * 338.84207 * 3 2 1 5 5 S 1.70037 * 112.19444 * 179.97438 * 4 3 2 6 6 C 1.75768 * 92.96834 * 0.02562 * 5 4 3 7 7 C 1.39167 * 109.85619 * 0.02562 * 6 5 4 8 8 C 1.40867 * 119.29191 * 180.02562 * 7 6 5 9 9 C 1.37973 * 120.83692 * 359.97438 * 8 7 6 10 10 C 1.37810 * 120.67141 * 359.73856 * 9 8 7 11 11 C 1.50698 * 120.05190 * 180.27647 * 10 9 8 12 12 O 1.42904 * 109.46844 * 0.25865 * 11 10 9 13 13 C 1.40436 * 119.90051 * 0.53449 * 10 9 8 14 14 C 1.40934 * 120.12545 * 179.74524 * 13 10 9 15 15 H 1.08003 * 120.00325 * 37.78212 * 14 13 10 16 16 C 1.39948 * 119.99846 * 217.77951 * 14 13 10 17 17 N 1.30852 * 120.00046 * 24.84530 * 16 14 13 18 18 Si 1.86806 * 119.99923 * 204.84071 * 16 14 13 19 19 H 1.48493 * 109.47414 * 270.00113 * 18 16 14 20 20 H 1.48499 * 109.46926 * 30.00371 * 18 16 14 21 21 H 1.48508 * 109.46848 * 150.00122 * 18 16 14 22 22 H 1.08008 * 123.90095 * 0.02562 * 4 3 2 23 23 H 1.07997 * 119.57818 * 179.97438 * 8 7 6 24 24 H 1.08001 * 119.66226 * 180.02562 * 9 8 7 25 25 H 1.08999 * 109.46969 * 120.25152 * 11 10 9 26 26 H 1.09001 * 109.47375 * 240.25767 * 11 10 9 27 27 H 0.96695 * 113.99740 * 180.02562 * 12 11 10 28 28 H 0.96997 * 119.99871 * 5.55383 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2977 -1.0455 0.4050 5 16 4.9677 -0.7472 0.2891 6 6 4.7267 0.8767 -0.3390 7 6 3.3653 1.1463 -0.4422 8 6 2.9460 2.4005 -0.9276 9 6 3.8664 3.3588 -1.2991 10 6 5.2184 3.1115 -1.1982 11 6 6.2115 4.1706 -1.6020 12 8 5.5120 5.3346 -2.0469 13 6 5.6693 1.8691 -0.7235 14 6 7.0508 1.6093 -0.6234 15 1 7.7260 2.3911 -0.3081 16 6 7.5479 0.3381 -0.9324 17 7 6.8850 -0.4437 -1.7459 18 14 9.1578 -0.2428 -0.1837 19 1 10.2839 0.1411 -1.0722 20 1 9.3405 0.3885 1.1479 21 1 9.1285 -1.7197 -0.0316 22 1 2.8748 -1.9725 0.7633 23 1 1.8906 2.6145 -1.0101 24 1 3.5238 4.3142 -1.6685 25 1 6.8368 4.4272 -0.7470 26 1 6.8379 3.7922 -2.4098 27 1 6.0898 6.0589 -2.3236 28 1 6.0925 -0.1136 -2.1974 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396230284.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:48 Heat of formation + Delta-G solvation = -13.963977 kcal Electronic energy + Delta-G solvation = -16243.854571 eV Core-core repulsion = 13542.711059 eV Total energy + Delta-G solvation = -2701.143513 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37166 -38.37378 -37.34405 -36.31930 -35.04562 -31.77102 -30.73178 -27.41897 -26.64094 -24.94451 -23.06934 -21.78033 -20.16802 -18.33416 -18.02784 -17.88793 -16.31916 -16.00982 -15.78131 -15.65657 -15.57955 -15.16987 -14.73753 -14.39645 -14.09624 -13.84923 -13.64517 -13.43739 -13.07106 -12.65544 -12.38640 -12.11305 -11.94349 -11.85319 -11.57310 -11.24782 -10.97697 -10.68051 -10.19255 -9.32170 -9.13048 -8.29244 -6.50824 -0.24825 0.68953 0.83165 0.96233 1.28286 1.58990 1.63469 1.67320 1.85795 2.31413 2.36455 2.71798 3.13497 3.30020 3.55696 3.75757 4.31575 4.38044 4.57762 4.70908 4.75880 4.77333 4.85508 5.14286 5.34229 5.42630 5.69509 5.80316 5.89787 6.04991 6.23135 6.41256 6.66965 6.81751 7.03873 8.04045 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.010674 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.018390 B = 2622.600476 C = 4223.343803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.304 3.696 3 C -0.084 4.084 4 C -0.175 4.175 5 S 0.240 5.760 6 C -0.258 4.258 7 C -0.023 4.023 8 C -0.226 4.226 9 C -0.050 4.050 10 C -0.215 4.215 11 C 0.158 3.842 12 O -0.586 6.586 13 C 0.120 3.880 14 C -0.544 4.544 15 H 0.085 0.915 16 C 0.010 3.990 17 N -0.787 5.787 18 Si 1.094 2.906 19 H -0.264 1.264 20 H -0.262 1.262 21 H -0.263 1.263 22 H 0.201 0.799 23 H 0.103 0.897 24 H 0.120 0.880 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.394 0.606 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.125 0.416 2.512 4.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.012 4.012 3 C -0.105 4.105 4 C -0.316 4.316 5 S 0.510 5.490 6 C -0.374 4.374 7 C -0.030 4.030 8 C -0.248 4.248 9 C -0.069 4.069 10 C -0.219 4.219 11 C 0.081 3.919 12 O -0.394 6.394 13 C 0.114 3.886 14 C -0.572 4.572 15 H 0.103 0.897 16 C -0.208 4.208 17 N -0.409 5.409 18 Si 0.912 3.088 19 H -0.189 1.189 20 H -0.187 1.187 21 H -0.188 1.188 22 H 0.218 0.782 23 H 0.121 0.879 24 H 0.138 0.862 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.244 0.756 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.148 -2.210 3.063 5.610 hybrid contribution -1.801 2.694 -0.838 3.347 sum 2.347 0.484 2.225 3.270 Atomic orbital electron populations 1.81136 1.12272 1.09371 1.11774 1.25222 0.91929 0.92129 0.91887 1.15691 0.84634 0.96337 1.13800 1.25597 1.02204 1.02434 1.01350 1.83083 0.97449 1.07653 1.60788 1.22908 0.95716 1.01892 1.16846 1.18729 0.91089 0.93657 0.99538 1.20318 0.98156 0.93721 1.12563 1.20459 0.92616 0.97649 0.96167 1.19807 0.94067 0.97437 1.10607 1.20309 0.91350 0.83436 0.96841 1.86376 1.39026 1.26602 1.87406 1.16940 0.92785 0.89570 0.89269 1.20554 0.92678 1.00639 1.43317 0.89669 1.28032 1.06663 0.92431 0.93718 1.70566 1.15096 1.39192 1.16051 0.83270 0.70820 0.77658 0.77091 1.18885 1.18665 1.18754 0.78217 0.87935 0.86230 0.93298 0.93709 0.75631 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -18.27 18.54 19.00 0.35 -17.91 15 2 C 0.30 11.47 15.42 88.33 1.36 12.83 15 3 C -0.08 -3.20 5.82 -20.90 -0.12 -3.32 15 4 C -0.17 -5.81 10.55 66.82 0.70 -5.11 15 5 S 0.24 9.15 19.66 -56.49 -1.11 8.04 15 6 C -0.26 -11.69 5.25 23.47 0.12 -11.57 15 7 C -0.02 -0.99 6.03 -20.28 -0.12 -1.11 15 8 C -0.23 -9.94 9.88 22.85 0.23 -9.72 15 9 C -0.05 -2.18 9.33 22.11 0.21 -1.98 15 10 C -0.21 -9.64 5.93 -19.43 -0.12 -9.75 15 11 C 0.16 5.92 6.35 71.24 0.45 6.37 15 12 O -0.59 -19.08 12.13 -148.98 -1.81 -20.88 15 13 C 0.12 5.67 4.99 -21.11 -0.11 5.57 15 14 C -0.54 -24.90 8.11 23.34 0.19 -24.71 15 15 H 0.09 3.78 7.38 -2.91 -0.02 3.76 15 16 C 0.01 0.43 4.11 85.25 0.35 0.78 15 17 N -0.79 -36.40 11.49 21.83 0.25 -36.15 15 18 Si 1.09 37.21 30.00 68.60 2.06 39.27 15 19 H -0.26 -8.48 7.11 99.48 0.71 -7.78 15 20 H -0.26 -8.45 7.11 99.48 0.71 -7.75 15 21 H -0.26 -8.74 7.11 99.48 0.71 -8.04 15 22 H 0.20 4.92 8.06 -2.91 -0.02 4.90 15 23 H 0.10 4.25 8.06 -2.91 -0.02 4.22 15 24 H 0.12 4.91 6.98 -2.91 -0.02 4.89 15 25 H 0.05 1.75 7.83 -2.39 -0.02 1.73 15 26 H 0.04 1.69 8.14 -2.39 -0.02 1.67 15 27 H 0.39 8.12 9.12 -74.06 -0.68 7.45 15 28 H 0.28 14.01 7.09 -92.71 -0.66 13.35 15 Total: -1.00 -54.52 267.56 3.55 -50.97 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.66 Total: 18.40 kcal Atomic # 6 Polarization: -44.87 SS G_CDS: 3.15 Total: -41.72 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.60 Total: -54.07 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -1.81 Total: -20.88 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.06 Total: 39.27 kcal Atomic # 16 Polarization: 9.15 SS G_CDS: -1.11 Total: 8.04 kcal Total: -54.52 3.55 -50.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396230284.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.004 kcal (2) G-P(sol) polarization free energy of solvation -54.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds