Wall clock time and date at job start Mon Mar 30 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.35586 * 124.81716 * 270.70217 * 3 2 1 5 5 C 1.39268 * 115.35984 * 180.02562 * 4 3 2 6 6 C 1.40013 * 112.98515 * 0.02562 * 5 4 3 7 7 S 1.75492 * 124.82220 * 90.73444 * 3 2 1 8 8 C 1.39709 * 119.97015 * 180.02562 * 6 5 4 9 9 C 1.50696 * 119.24685 * 180.02562 * 8 6 5 10 10 O 1.42908 * 109.47370 * 179.97438 * 9 8 6 11 11 C 1.38126 * 121.50956 * 359.97438 * 8 6 5 12 12 C 1.37626 * 121.14859 * 0.02562 * 11 8 6 13 13 C 1.40352 * 120.14507 * 359.97438 * 12 11 8 14 14 C 1.40391 * 120.40637 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00163 * 204.81443 * 14 13 12 16 16 C 1.40162 * 120.00003 * 24.81248 * 14 13 12 17 17 N 1.30732 * 119.99823 * 17.77325 * 16 14 13 18 18 Si 1.86796 * 120.00046 * 197.77611 * 16 14 13 19 19 H 1.48504 * 109.47066 * 59.99797 * 18 16 14 20 20 H 1.48497 * 109.47216 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47036 * 299.99804 * 18 16 14 22 22 H 1.07998 * 122.32084 * 0.29739 * 4 3 2 23 23 H 1.09001 * 109.47167 * 299.97593 * 9 8 6 24 24 H 1.09005 * 109.47448 * 59.98006 * 9 8 6 25 25 H 0.96700 * 114.00111 * 180.02562 * 10 9 8 26 26 H 1.08002 * 119.42535 * 180.02562 * 11 8 6 27 27 H 1.08001 * 119.92456 * 179.97438 * 12 11 8 28 28 H 0.97002 * 119.99872 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3421 -0.0127 1.1130 5 6 4.7158 -0.0087 0.8842 6 6 5.0433 0.0092 -0.4769 7 16 3.5700 0.0196 -1.4405 8 6 6.3833 0.0148 -0.8723 9 6 6.7173 0.0346 -2.3417 10 8 8.1367 0.0377 -2.5076 11 6 7.4090 0.0035 0.0527 12 6 7.1488 -0.0142 1.4040 13 6 5.8237 -0.0206 1.8666 14 6 5.5519 -0.0381 3.2438 15 1 4.6147 -0.4356 3.6044 16 6 6.4970 0.4603 4.1510 17 7 7.4560 1.2435 3.7315 18 14 6.3863 0.0053 5.9593 19 1 6.4906 -1.4688 6.1062 20 1 7.4953 0.6560 6.7023 21 1 5.0853 0.4665 6.5071 22 1 2.9225 -0.0298 2.1081 23 1 6.2973 -0.8492 -2.8218 24 1 6.2963 0.9306 -2.7980 25 1 8.4247 0.0507 -3.4307 26 1 8.4330 0.0087 -0.2905 27 1 7.9660 -0.0231 2.1100 28 1 8.1103 1.5882 4.3593 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396230569.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:45 Heat of formation + Delta-G solvation = 5.320212 kcal Electronic energy + Delta-G solvation = -15821.286596 eV Core-core repulsion = 13120.979308 eV Total energy + Delta-G solvation = -2700.307287 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.45466 -36.59443 -36.00956 -34.64244 -33.56389 -30.62191 -28.68371 -27.09013 -24.15631 -23.32086 -21.37610 -19.54980 -18.53138 -17.29003 -16.60162 -15.71344 -15.31869 -14.74930 -14.45880 -14.22035 -13.60553 -13.42237 -13.28078 -12.55264 -12.34544 -12.27991 -11.99617 -11.74842 -11.53142 -11.45535 -11.24821 -10.77447 -10.46998 -10.12613 -9.98024 -9.86036 -9.70649 -9.40990 -8.38499 -7.52882 -7.33695 -6.97201 -4.75337 1.26060 2.10486 2.41938 2.71084 2.80157 2.82253 2.90308 3.06778 3.52655 3.59959 3.97625 4.11715 4.71844 4.72707 5.16881 5.68655 5.89529 6.00033 6.11476 6.13663 6.24745 6.50392 6.64971 6.77567 7.00658 7.02831 7.38951 7.51672 7.60160 7.70274 8.01889 8.08398 8.14681 8.26846 8.43047 9.52368 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.014915 B = 0.008548 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.882934 B = 3274.877575 C = 5067.024423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.308 3.692 3 C -0.245 4.245 4 C 0.030 3.970 5 C -0.207 4.207 6 C -0.043 4.043 7 S 0.059 5.941 8 C -0.211 4.211 9 C 0.140 3.860 10 O -0.567 6.567 11 C -0.023 4.023 12 C -0.194 4.194 13 C 0.159 3.841 14 C -0.402 4.402 15 H 0.093 0.907 16 C 0.069 3.931 17 N -0.744 5.744 18 Si 0.921 3.079 19 H -0.256 1.256 20 H -0.272 1.272 21 H -0.258 1.258 22 H 0.133 0.867 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.370 0.630 26 H 0.111 0.889 27 H 0.125 0.875 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.217 -1.316 -2.933 4.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.005 4.005 3 C -0.362 4.362 4 C -0.003 4.003 5 C -0.212 4.212 6 C -0.159 4.159 7 S 0.321 5.679 8 C -0.220 4.220 9 C 0.062 3.938 10 O -0.371 6.371 11 C -0.044 4.044 12 C -0.215 4.215 13 C 0.153 3.847 14 C -0.428 4.428 15 H 0.111 0.889 16 C -0.156 4.156 17 N -0.364 5.364 18 Si 0.743 3.257 19 H -0.180 1.180 20 H -0.196 1.196 21 H -0.182 1.182 22 H 0.151 0.849 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.215 0.785 26 H 0.129 0.871 27 H 0.143 0.857 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.192 -1.139 -3.724 4.073 hybrid contribution 0.722 -0.024 1.590 1.746 sum 1.914 -1.163 -2.134 3.094 Atomic orbital electron populations 1.81158 1.11573 1.13911 1.08054 1.24550 0.91185 0.91670 0.93050 1.18843 0.87724 1.31998 0.97681 1.20096 0.92024 0.91087 0.97130 1.18727 0.92103 1.18433 0.91963 1.22082 0.95017 1.03171 0.95601 1.83374 0.95726 1.81709 1.07104 1.18099 0.89949 1.20892 0.93097 1.20612 0.80300 0.98103 0.94750 1.86500 1.22557 1.97714 1.30344 1.20397 0.97310 0.94189 0.92549 1.21125 0.96358 1.09841 0.94207 1.18497 0.89770 0.85302 0.91160 1.19877 1.02349 1.29551 0.91057 0.88872 1.26255 0.93641 0.92534 1.03193 1.69768 1.09896 1.17802 1.38966 0.86107 0.79678 0.80604 0.79275 1.18014 1.19639 1.18227 0.84900 0.94414 0.94417 0.78508 0.87078 0.85692 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.48 18.54 41.83 0.78 -8.71 15 2 C 0.31 6.02 15.78 -22.48 -0.35 5.67 15 3 C -0.24 -4.79 6.24 -38.60 -0.24 -5.03 15 4 C 0.03 0.61 9.68 -40.15 -0.39 0.23 15 5 C -0.21 -4.60 6.01 -104.82 -0.63 -5.23 15 6 C -0.04 -0.90 6.30 -38.37 -0.24 -1.14 15 7 S 0.06 1.09 22.88 -107.50 -2.46 -1.37 15 8 C -0.21 -4.37 5.92 -104.12 -0.62 -4.98 15 9 C 0.14 2.36 7.06 36.00 0.25 2.61 15 10 O -0.57 -8.81 12.04 -35.23 -0.42 -9.24 15 11 C -0.02 -0.50 9.28 -39.85 -0.37 -0.87 15 12 C -0.19 -4.42 8.66 -39.01 -0.34 -4.76 15 13 C 0.16 3.68 5.76 -104.26 -0.60 3.08 15 14 C -0.40 -8.92 8.81 -38.05 -0.34 -9.25 15 15 H 0.09 1.93 7.49 -52.49 -0.39 1.54 15 16 C 0.07 1.44 5.13 -17.30 -0.09 1.35 15 17 N -0.74 -16.07 10.97 55.56 0.61 -15.46 15 18 Si 0.92 15.52 29.60 -169.99 -5.03 10.49 15 19 H -0.26 -4.32 7.11 56.52 0.40 -3.92 15 20 H -0.27 -4.47 7.11 56.52 0.40 -4.07 15 21 H -0.26 -4.36 7.11 56.52 0.40 -3.95 15 22 H 0.13 2.48 7.69 -52.49 -0.40 2.07 15 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 25 H 0.37 3.63 9.12 45.56 0.42 4.05 15 26 H 0.11 2.27 6.89 -52.49 -0.36 1.91 15 27 H 0.13 2.87 6.16 -52.49 -0.32 2.55 15 28 H 0.30 5.69 8.29 -40.82 -0.34 5.35 15 LS Contribution 271.90 15.07 4.10 4.10 Total: -1.00 -25.21 271.90 -7.43 -32.63 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -1.05 Total: 5.88 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -3.95 Total: -18.33 kcal Atomic # 7 Polarization: -25.55 SS G_CDS: 1.38 Total: -24.17 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.42 Total: -9.24 kcal Atomic # 14 Polarization: 15.52 SS G_CDS: -5.03 Total: 10.49 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.46 Total: -1.37 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -25.21 -7.43 -32.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396230569.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.953 kcal (2) G-P(sol) polarization free energy of solvation -25.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds