Wall clock time and date at job start Mon Mar 30 2020 06:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.35586 * 124.81716 * 270.70217 * 3 2 1 5 5 C 1.39268 * 115.35984 * 180.02562 * 4 3 2 6 6 C 1.40013 * 112.98515 * 0.02562 * 5 4 3 7 7 S 1.75492 * 124.82220 * 90.73444 * 3 2 1 8 8 C 1.39709 * 119.97015 * 180.02562 * 6 5 4 9 9 C 1.50696 * 119.24685 * 180.02562 * 8 6 5 10 10 O 1.42908 * 109.47370 * 179.97438 * 9 8 6 11 11 C 1.38126 * 121.50956 * 359.97438 * 8 6 5 12 12 C 1.37626 * 121.14859 * 0.02562 * 11 8 6 13 13 C 1.40352 * 120.14507 * 359.97438 * 12 11 8 14 14 C 1.40391 * 120.40637 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00163 * 204.81443 * 14 13 12 16 16 C 1.40162 * 120.00003 * 24.81248 * 14 13 12 17 17 N 1.30732 * 119.99823 * 17.77325 * 16 14 13 18 18 Si 1.86796 * 120.00046 * 197.77611 * 16 14 13 19 19 H 1.48504 * 109.47066 * 59.99797 * 18 16 14 20 20 H 1.48497 * 109.47216 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47036 * 299.99804 * 18 16 14 22 22 H 1.07998 * 122.32084 * 0.29739 * 4 3 2 23 23 H 1.09001 * 109.47167 * 299.97593 * 9 8 6 24 24 H 1.09005 * 109.47448 * 59.98006 * 9 8 6 25 25 H 0.96700 * 114.00111 * 180.02562 * 10 9 8 26 26 H 1.08002 * 119.42535 * 180.02562 * 11 8 6 27 27 H 1.08001 * 119.92456 * 179.97438 * 12 11 8 28 28 H 0.97002 * 119.99872 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3421 -0.0127 1.1130 5 6 4.7158 -0.0087 0.8842 6 6 5.0433 0.0092 -0.4769 7 16 3.5700 0.0196 -1.4405 8 6 6.3833 0.0148 -0.8723 9 6 6.7173 0.0346 -2.3417 10 8 8.1367 0.0377 -2.5076 11 6 7.4090 0.0035 0.0527 12 6 7.1488 -0.0142 1.4040 13 6 5.8237 -0.0206 1.8666 14 6 5.5519 -0.0381 3.2438 15 1 4.6147 -0.4356 3.6044 16 6 6.4970 0.4603 4.1510 17 7 7.4560 1.2435 3.7315 18 14 6.3863 0.0053 5.9593 19 1 6.4906 -1.4688 6.1062 20 1 7.4953 0.6560 6.7023 21 1 5.0853 0.4665 6.5071 22 1 2.9225 -0.0298 2.1081 23 1 6.2973 -0.8492 -2.8218 24 1 6.2963 0.9306 -2.7980 25 1 8.4247 0.0507 -3.4307 26 1 8.4330 0.0087 -0.2905 27 1 7.9660 -0.0231 2.1100 28 1 8.1103 1.5882 4.3593 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396230569.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:44 Heat of formation + Delta-G solvation = -8.218337 kcal Electronic energy + Delta-G solvation = -15821.873671 eV Core-core repulsion = 13120.979308 eV Total energy + Delta-G solvation = -2700.894363 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.04192 -38.02743 -37.48511 -36.23879 -35.11547 -32.20356 -30.31883 -28.61368 -25.66882 -24.92638 -22.98772 -21.12324 -20.10788 -18.85576 -17.93082 -17.26883 -16.80897 -16.35089 -15.76609 -15.72701 -15.17383 -14.99965 -14.72898 -14.15881 -13.91442 -13.83996 -13.51534 -13.34311 -13.08247 -12.90089 -12.66460 -12.13525 -12.01700 -11.65082 -11.57346 -11.29634 -11.26249 -10.86812 -9.95545 -9.15265 -8.90770 -8.54286 -6.39856 -0.36205 0.53933 0.83160 1.11588 1.38200 1.40932 1.52713 1.56402 1.99898 2.12791 2.37875 2.54325 3.10990 3.50711 3.57041 4.28965 4.49275 4.49844 4.55304 4.68000 4.72195 4.93921 5.04323 5.14889 5.35649 5.41988 5.75921 5.87912 5.98712 6.09789 6.45454 6.48899 6.61846 6.76565 7.09125 8.00844 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.014915 B = 0.008548 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.882934 B = 3274.877575 C = 5067.024423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.318 3.682 3 C -0.242 4.242 4 C 0.023 3.977 5 C -0.227 4.227 6 C -0.064 4.064 7 S 0.116 5.884 8 C -0.222 4.222 9 C 0.145 3.855 10 O -0.582 6.582 11 C -0.029 4.029 12 C -0.217 4.217 13 C 0.133 3.867 14 C -0.429 4.429 15 H 0.099 0.901 16 C 0.037 3.963 17 N -0.775 5.775 18 Si 0.989 3.011 19 H -0.256 1.256 20 H -0.264 1.264 21 H -0.256 1.256 22 H 0.143 0.857 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.395 0.605 26 H 0.117 0.883 27 H 0.114 0.886 28 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.638 -1.481 -3.502 4.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C 0.005 3.995 3 C -0.360 4.360 4 C -0.011 4.011 5 C -0.232 4.232 6 C -0.180 4.180 7 S 0.379 5.621 8 C -0.232 4.232 9 C 0.067 3.933 10 O -0.390 6.390 11 C -0.050 4.050 12 C -0.239 4.239 13 C 0.128 3.872 14 C -0.454 4.454 15 H 0.117 0.883 16 C -0.186 4.186 17 N -0.396 5.396 18 Si 0.808 3.192 19 H -0.180 1.180 20 H -0.188 1.188 21 H -0.180 1.180 22 H 0.161 0.839 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.245 0.755 26 H 0.135 0.865 27 H 0.132 0.868 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.619 -1.301 -4.343 4.576 hybrid contribution 0.858 0.039 1.624 1.837 sum 1.477 -1.261 -2.719 3.341 Atomic orbital electron populations 1.81176 1.11805 1.13996 1.08447 1.24422 0.90960 0.91386 0.92695 1.19003 0.87840 1.30778 0.98398 1.20164 0.91479 0.91450 0.98014 1.18975 0.92719 1.18891 0.92589 1.22396 0.96478 1.03143 0.96018 1.83106 0.93274 1.80690 1.05065 1.18536 0.89659 1.19717 0.95250 1.20523 0.81238 0.99331 0.92176 1.86435 1.21738 1.97735 1.33064 1.20534 0.98073 0.94017 0.92365 1.21111 0.96244 1.11771 0.94748 1.18790 0.90257 0.86076 0.92112 1.20142 1.03356 1.30613 0.91317 0.88331 1.27027 0.92855 0.91820 1.06849 1.69797 1.10632 1.18538 1.40623 0.85111 0.79772 0.80102 0.74226 1.17968 1.18792 1.17963 0.83916 0.92842 0.93166 0.75502 0.86532 0.86840 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -18.32 18.54 19.00 0.35 -17.97 15 2 C 0.32 11.81 15.78 88.33 1.39 13.20 15 3 C -0.24 -9.07 6.24 22.90 0.14 -8.93 15 4 C 0.02 0.91 9.68 21.90 0.21 1.13 15 5 C -0.23 -10.08 6.01 -19.99 -0.12 -10.20 15 6 C -0.06 -2.66 6.30 23.06 0.15 -2.51 15 7 S 0.12 4.04 22.88 -56.49 -1.29 2.75 15 8 C -0.22 -9.04 5.92 -19.54 -0.12 -9.16 15 9 C 0.14 4.57 7.06 71.23 0.50 5.07 15 10 O -0.58 -16.89 12.04 -148.98 -1.79 -18.68 15 11 C -0.03 -1.25 9.28 22.10 0.21 -1.05 15 12 C -0.22 -10.25 8.66 22.64 0.20 -10.06 15 13 C 0.13 6.35 5.76 -19.63 -0.11 6.24 15 14 C -0.43 -19.41 8.81 23.26 0.21 -19.21 15 15 H 0.10 4.16 7.49 -2.91 -0.02 4.14 15 16 C 0.04 1.56 5.13 85.32 0.44 2.00 15 17 N -0.77 -34.23 10.97 21.87 0.24 -33.99 15 18 Si 0.99 31.60 29.60 68.60 2.03 33.63 15 19 H -0.26 -8.08 7.11 99.48 0.71 -7.37 15 20 H -0.26 -7.99 7.11 99.48 0.71 -7.29 15 21 H -0.26 -8.00 7.11 99.48 0.71 -7.30 15 22 H 0.14 5.27 7.69 -2.91 -0.02 5.25 15 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 15 24 H 0.05 1.46 8.14 -2.38 -0.02 1.44 15 25 H 0.40 6.70 9.12 -74.06 -0.68 6.02 15 26 H 0.12 4.82 6.89 -2.91 -0.02 4.80 15 27 H 0.11 5.48 6.16 -2.91 -0.02 5.47 15 28 H 0.30 11.88 8.29 -92.71 -0.77 11.11 15 Total: -1.00 -53.14 271.90 3.18 -49.96 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.56 Total: 17.78 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 3.09 Total: -33.47 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.59 Total: -51.96 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -1.79 Total: -18.68 kcal Atomic # 14 Polarization: 31.60 SS G_CDS: 2.03 Total: 33.63 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.29 Total: 2.75 kcal Total: -53.14 3.18 -49.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396230569.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.741 kcal (2) G-P(sol) polarization free energy of solvation -53.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds