Wall clock time and date at job start Mon Mar 30 2020 07:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38395 * 119.92231 * 2 1 4 4 C 1.38347 * 120.29819 * 180.02562 * 3 2 1 5 5 C 1.37961 * 120.14993 * 359.75900 * 4 3 2 6 6 C 1.39610 * 119.84730 * 0.51706 * 5 4 3 7 7 C 1.47771 * 120.14641 * 179.73960 * 6 5 4 8 8 N 1.29836 * 125.06066 * 132.53694 * 7 6 5 9 9 C 1.32763 * 116.01089 * 179.97438 * 8 7 6 10 10 C 1.41148 * 122.77783 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99939 * 185.72524 * 10 9 8 12 12 C 1.39655 * 119.99872 * 5.73589 * 10 9 8 13 13 N 1.31049 * 120.00214 * 5.84861 * 12 10 9 14 14 Si 1.86803 * 119.99882 * 185.84506 * 12 10 9 15 15 H 1.48499 * 109.47117 * 265.00387 * 14 12 10 16 16 H 1.48491 * 109.47220 * 25.00325 * 14 12 10 17 17 H 1.48500 * 109.46943 * 145.00529 * 14 12 10 18 18 C 1.37990 * 114.44731 * 0.26866 * 9 8 7 19 19 S 1.70999 * 108.89260 * 359.59559 * 18 9 8 20 20 C 1.37915 * 119.92403 * 180.02562 * 2 1 3 21 21 C 1.50701 * 120.08124 * 359.95036 * 20 2 1 22 22 H 1.09003 * 109.47016 * 269.97731 * 1 2 3 23 23 H 1.08997 * 109.47188 * 29.98058 * 1 2 3 24 24 H 1.09005 * 109.46820 * 149.97684 * 1 2 3 25 25 H 1.08001 * 119.84985 * 0.02562 * 3 2 1 26 26 H 1.08002 * 119.92779 * 180.02562 * 4 3 2 27 27 H 1.08001 * 120.07804 * 180.25877 * 5 4 3 28 28 H 0.97003 * 120.00194 * 180.02562 * 13 12 10 29 29 H 1.08000 * 125.55147 * 179.73708 * 18 9 8 30 30 H 1.09002 * 109.47213 * 275.26840 * 21 20 2 31 31 H 1.09000 * 109.46900 * 35.26327 * 21 20 2 32 32 H 1.08999 * 109.47408 * 155.26650 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1995 0.0000 4 6 3.5808 1.2086 -0.0005 5 6 4.2816 0.0202 0.0039 6 6 3.5915 -1.1934 -0.0019 7 6 4.3354 -2.4702 -0.0030 8 7 4.0874 -3.4786 0.7764 9 6 4.8696 -4.5401 0.6219 10 6 4.7268 -5.7134 1.3933 11 1 5.4442 -6.5147 1.2954 12 6 3.6576 -5.8382 2.2831 13 7 2.7246 -4.9186 2.3195 14 14 3.5572 -7.3161 3.4212 15 1 2.7025 -8.3607 2.8019 16 1 4.9201 -7.8610 3.6463 17 1 2.9691 -6.9014 4.7202 18 6 5.8380 -4.3991 -0.3510 19 16 5.6884 -2.8506 -1.0608 20 6 2.1950 -1.1953 -0.0005 21 6 1.4417 -2.5005 0.0000 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6537 2.1326 0.0004 26 1 4.1135 2.1481 -0.0001 27 1 5.3616 0.0286 0.0077 28 1 1.9822 -5.0051 2.9377 29 1 6.5696 -5.1460 -0.6217 30 1 1.1791 -2.7680 1.0235 31 1 0.5329 -2.3956 -0.5926 32 1 2.0680 -3.2818 -0.4304 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405159577.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:25 Heat of formation + Delta-G solvation = 51.249630 kcal Electronic energy + Delta-G solvation = -16531.778421 eV Core-core repulsion = 13969.295877 eV Total energy + Delta-G solvation = -2562.482544 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.25420 -37.59729 -33.39806 -32.97460 -32.01645 -28.80287 -27.27707 -25.95510 -25.60917 -23.54531 -20.74316 -20.34264 -18.68155 -17.50820 -15.92951 -15.24355 -15.16064 -15.10649 -14.28894 -13.88411 -13.36482 -12.80967 -12.73500 -12.55838 -12.23347 -12.09071 -11.85485 -11.59465 -11.35862 -11.22223 -11.16452 -10.80941 -10.65833 -10.45528 -10.37500 -9.71567 -9.31271 -8.53706 -8.13864 -8.05393 -7.85441 -7.22905 -6.56179 -4.36830 1.42985 1.79209 2.38470 2.92435 3.04834 3.09796 3.14271 3.63560 3.99871 4.10596 4.36760 5.08667 5.16661 5.22463 5.43347 5.49332 5.53608 5.70139 5.79990 5.96803 6.01776 6.24447 6.35262 6.42011 6.57751 6.63076 6.84029 6.93002 6.98275 7.09305 7.19571 7.23992 7.40496 7.50392 8.17959 8.53088 8.86965 9.56835 10.32097 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.021485 B = 0.007351 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.914454 B = 3807.930303 C = 4780.717000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.120 4.120 4 C -0.129 4.129 5 C -0.105 4.105 6 C 0.005 3.995 7 C 0.079 3.921 8 N -0.380 5.380 9 C 0.226 3.774 10 C -0.432 4.432 11 H 0.083 0.917 12 C 0.074 3.926 13 N -0.749 5.749 14 Si 0.910 3.090 15 H -0.271 1.271 16 H -0.263 1.263 17 H -0.277 1.277 18 C -0.454 4.454 19 S -0.017 6.017 20 C -0.040 4.040 21 C -0.106 4.106 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.273 0.727 29 H 0.138 0.862 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.911 8.573 -2.686 9.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.139 4.139 4 C -0.148 4.148 5 C -0.125 4.125 6 C 0.001 3.999 7 C -0.201 4.201 8 N -0.094 5.094 9 C 0.102 3.898 10 C -0.466 4.466 11 H 0.101 0.899 12 C -0.149 4.149 13 N -0.372 5.372 14 Si 0.734 3.266 15 H -0.196 1.196 16 H -0.187 1.187 17 H -0.202 1.202 18 C -0.593 4.593 19 S 0.234 5.766 20 C -0.043 4.043 21 C -0.162 4.162 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.134 0.866 26 H 0.137 0.863 27 H 0.140 0.860 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.978 9.073 -2.959 10.339 hybrid contribution 0.118 -1.556 1.078 1.896 sum -3.860 7.517 -1.881 8.657 Atomic orbital electron populations 1.20797 0.91511 1.02398 1.02134 1.19628 0.95816 0.92427 1.01891 1.20957 0.94166 0.96996 1.01766 1.20862 0.94110 0.97385 1.02400 1.21196 0.99775 0.91384 1.00188 1.17923 0.91806 0.89693 1.00430 1.25756 0.98387 0.97277 0.98658 1.67569 1.23566 0.98419 1.19835 1.17896 0.87988 0.91878 0.92069 1.18917 1.09105 1.00101 1.18487 0.89858 1.25932 0.94843 0.97128 0.96957 1.70082 1.07056 1.30383 1.29642 0.86279 0.79464 0.81343 0.79501 1.19627 1.18654 1.20177 1.25322 1.16849 1.02095 1.15014 1.82631 1.35280 1.14714 1.44016 1.19914 0.92313 0.95397 0.96716 1.20793 0.98393 0.93763 1.03231 0.91411 0.92139 0.91174 0.86586 0.86290 0.86006 0.91611 0.84386 0.89725 0.93090 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.60 36.01 0.35 -1.05 16 2 C -0.10 -1.54 5.87 -104.68 -0.61 -2.15 16 3 C -0.12 -1.71 9.69 -39.48 -0.38 -2.09 16 4 C -0.13 -1.90 10.03 -39.64 -0.40 -2.30 16 5 C -0.11 -1.84 9.74 -39.17 -0.38 -2.23 16 6 C 0.01 0.11 5.85 -104.96 -0.61 -0.50 16 7 C 0.08 1.87 5.94 -14.50 -0.09 1.79 16 8 N -0.38 -10.17 7.07 -9.17 -0.06 -10.24 16 9 C 0.23 6.27 6.43 -86.45 -0.56 5.71 16 10 C -0.43 -11.82 9.22 -37.95 -0.35 -12.17 16 11 H 0.08 2.18 7.85 -52.49 -0.41 1.77 16 12 C 0.07 1.89 5.48 -17.36 -0.10 1.80 16 13 N -0.75 -19.57 11.75 55.53 0.65 -18.92 16 14 Si 0.91 19.01 29.56 -169.99 -5.03 13.99 16 15 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 16 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 17 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 18 C -0.45 -11.67 10.99 30.64 0.34 -11.33 16 19 S -0.02 -0.39 23.09 -107.50 -2.48 -2.87 16 20 C -0.04 -0.77 5.91 -104.22 -0.62 -1.39 16 21 C -0.11 -2.06 8.75 36.01 0.31 -1.75 16 22 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 24 H 0.07 0.86 6.02 -51.93 -0.31 0.55 16 25 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 26 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 27 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 28 H 0.27 6.53 8.30 -40.82 -0.34 6.19 16 29 H 0.14 3.39 8.06 -52.49 -0.42 2.97 16 30 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 31 H 0.05 0.83 6.17 -51.93 -0.32 0.51 16 32 H 0.07 1.72 6.33 -51.93 -0.33 1.39 16 LS Contribution 287.56 15.07 4.33 4.33 Total: -1.00 -28.97 287.56 -9.15 -38.12 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -3.46 Total: 3.23 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: -3.10 Total: -27.65 kcal Atomic # 7 Polarization: -29.75 SS G_CDS: 0.59 Total: -29.16 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.99 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -2.48 Total: -2.87 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.97 -9.15 -38.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405159577.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.371 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds