Wall clock time and date at job start Mon Mar 30 2020 07:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38395 * 119.92231 * 2 1 4 4 C 1.38347 * 120.29819 * 180.02562 * 3 2 1 5 5 C 1.37961 * 120.14993 * 359.75900 * 4 3 2 6 6 C 1.39610 * 119.84730 * 0.51706 * 5 4 3 7 7 C 1.47771 * 120.14641 * 179.73960 * 6 5 4 8 8 N 1.29836 * 125.06066 * 132.53694 * 7 6 5 9 9 C 1.32763 * 116.01089 * 179.97438 * 8 7 6 10 10 C 1.41148 * 122.77783 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99939 * 185.72524 * 10 9 8 12 12 C 1.39655 * 119.99872 * 5.73589 * 10 9 8 13 13 N 1.31049 * 120.00214 * 5.84861 * 12 10 9 14 14 Si 1.86803 * 119.99882 * 185.84506 * 12 10 9 15 15 H 1.48499 * 109.47117 * 265.00387 * 14 12 10 16 16 H 1.48491 * 109.47220 * 25.00325 * 14 12 10 17 17 H 1.48500 * 109.46943 * 145.00529 * 14 12 10 18 18 C 1.37990 * 114.44731 * 0.26866 * 9 8 7 19 19 S 1.70999 * 108.89260 * 359.59559 * 18 9 8 20 20 C 1.37915 * 119.92403 * 180.02562 * 2 1 3 21 21 C 1.50701 * 120.08124 * 359.95036 * 20 2 1 22 22 H 1.09003 * 109.47016 * 269.97731 * 1 2 3 23 23 H 1.08997 * 109.47188 * 29.98058 * 1 2 3 24 24 H 1.09005 * 109.46820 * 149.97684 * 1 2 3 25 25 H 1.08001 * 119.84985 * 0.02562 * 3 2 1 26 26 H 1.08002 * 119.92779 * 180.02562 * 4 3 2 27 27 H 1.08001 * 120.07804 * 180.25877 * 5 4 3 28 28 H 0.97003 * 120.00194 * 180.02562 * 13 12 10 29 29 H 1.08000 * 125.55147 * 179.73708 * 18 9 8 30 30 H 1.09002 * 109.47213 * 275.26840 * 21 20 2 31 31 H 1.09000 * 109.46900 * 35.26327 * 21 20 2 32 32 H 1.08999 * 109.47408 * 155.26650 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1995 0.0000 4 6 3.5808 1.2086 -0.0005 5 6 4.2816 0.0202 0.0039 6 6 3.5915 -1.1934 -0.0019 7 6 4.3354 -2.4702 -0.0030 8 7 4.0874 -3.4786 0.7764 9 6 4.8696 -4.5401 0.6219 10 6 4.7268 -5.7134 1.3933 11 1 5.4442 -6.5147 1.2954 12 6 3.6576 -5.8382 2.2831 13 7 2.7246 -4.9186 2.3195 14 14 3.5572 -7.3161 3.4212 15 1 2.7025 -8.3607 2.8019 16 1 4.9201 -7.8610 3.6463 17 1 2.9691 -6.9014 4.7202 18 6 5.8380 -4.3991 -0.3510 19 16 5.6884 -2.8506 -1.0608 20 6 2.1950 -1.1953 -0.0005 21 6 1.4417 -2.5005 0.0000 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6537 2.1326 0.0004 26 1 4.1135 2.1481 -0.0001 27 1 5.3616 0.0286 0.0077 28 1 1.9822 -5.0051 2.9377 29 1 6.5696 -5.1460 -0.6217 30 1 1.1791 -2.7680 1.0235 31 1 0.5329 -2.3956 -0.5926 32 1 2.0680 -3.2818 -0.4304 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405159577.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:24 Heat of formation + Delta-G solvation = 36.034855 kcal Electronic energy + Delta-G solvation = -16532.438183 eV Core-core repulsion = 13969.295877 eV Total energy + Delta-G solvation = -2563.142306 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.66252 -39.40133 -35.25973 -34.25280 -33.52880 -30.61452 -28.62435 -27.61389 -27.20102 -25.19310 -22.39385 -21.63373 -20.43952 -19.42117 -17.49542 -17.02429 -16.64749 -16.58588 -15.85571 -15.20193 -14.98718 -14.49383 -14.28396 -13.81460 -13.65394 -13.49285 -13.42742 -13.34276 -12.93968 -12.71511 -12.60937 -12.55445 -12.25821 -11.98899 -11.69882 -11.60290 -11.18076 -10.15892 -9.95937 -9.64008 -9.41495 -9.02795 -8.47584 -6.40790 -0.09759 0.51059 0.63511 1.16567 1.36416 1.40192 1.50982 1.71146 2.22294 2.35234 2.88052 3.44219 3.56158 3.98387 4.05623 4.18979 4.33277 4.48154 4.72334 4.77068 4.82932 4.92338 4.96899 5.04632 5.05805 5.08001 5.25801 5.29865 5.45743 5.50099 5.60534 5.65065 5.83608 6.14499 6.15909 6.52858 6.85935 7.63695 8.41589 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.021485 B = 0.007351 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.914454 B = 3807.930303 C = 4780.717000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.097 4.097 3 C -0.106 4.106 4 C -0.118 4.118 5 C -0.115 4.115 6 C -0.038 4.038 7 C 0.085 3.915 8 N -0.416 5.416 9 C 0.197 3.803 10 C -0.470 4.470 11 H 0.081 0.919 12 C 0.030 3.970 13 N -0.773 5.773 14 Si 0.988 3.012 15 H -0.261 1.261 16 H -0.261 1.261 17 H -0.266 1.266 18 C -0.490 4.490 19 S 0.028 5.972 20 C -0.065 4.065 21 C -0.091 4.091 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.066 0.934 25 H 0.161 0.839 26 H 0.159 0.841 27 H 0.124 0.876 28 H 0.281 0.719 29 H 0.138 0.862 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.323 11.090 -2.440 12.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.124 4.124 4 C -0.136 4.136 5 C -0.135 4.135 6 C -0.042 4.042 7 C -0.194 4.194 8 N -0.131 5.131 9 C 0.073 3.927 10 C -0.504 4.504 11 H 0.099 0.901 12 C -0.190 4.190 13 N -0.396 5.396 14 Si 0.809 3.191 15 H -0.186 1.186 16 H -0.185 1.185 17 H -0.191 1.191 18 C -0.629 4.629 19 S 0.280 5.720 20 C -0.068 4.068 21 C -0.148 4.148 22 H 0.093 0.907 23 H 0.110 0.890 24 H 0.085 0.915 25 H 0.178 0.822 26 H 0.177 0.823 27 H 0.142 0.858 28 H 0.091 0.909 29 H 0.156 0.844 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -5.372 11.599 -2.740 13.073 hybrid contribution 0.506 -2.136 0.927 2.383 sum -4.865 9.463 -1.813 10.794 Atomic orbital electron populations 1.20869 0.89035 1.03819 1.03018 1.20024 0.97659 0.91657 1.00372 1.21496 0.94195 0.97991 0.98761 1.21320 0.94657 0.97617 0.99989 1.21359 1.00171 0.91450 1.00523 1.18139 0.92698 0.89178 1.04164 1.26489 0.98016 0.97806 0.97136 1.67580 1.24585 0.99106 1.21804 1.18335 0.88791 0.92818 0.92772 1.19246 1.10410 1.00504 1.20254 0.90103 1.26827 0.93826 1.00296 0.98026 1.70178 1.07347 1.32005 1.30038 0.85104 0.79487 0.77275 0.77257 1.18613 1.18506 1.19065 1.25525 1.17201 1.04216 1.15913 1.82174 1.34691 1.12220 1.42934 1.20001 0.91921 0.96291 0.98565 1.20577 0.98886 0.93332 1.01957 0.90657 0.89026 0.91497 0.82191 0.82311 0.85764 0.90924 0.84405 0.91902 0.90219 0.94938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 9.60 71.24 0.68 -1.68 16 2 C -0.10 -2.77 5.87 -19.90 -0.12 -2.89 16 3 C -0.11 -2.49 9.69 22.33 0.22 -2.28 16 4 C -0.12 -2.97 10.03 22.23 0.22 -2.75 16 5 C -0.11 -3.85 9.74 22.54 0.22 -3.63 16 6 C -0.04 -1.56 5.85 -20.09 -0.12 -1.68 16 7 C 0.09 4.22 5.94 87.51 0.52 4.74 16 8 N -0.42 -23.49 7.07 -182.93 -1.29 -24.78 16 9 C 0.20 11.57 6.43 39.66 0.25 11.83 16 10 C -0.47 -27.09 9.22 23.33 0.22 -26.88 16 11 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 12 C 0.03 1.60 5.48 85.15 0.47 2.07 16 13 N -0.77 -41.94 11.75 21.78 0.26 -41.68 16 14 Si 0.99 39.83 29.56 68.60 2.03 41.86 16 15 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 16 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 17 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 18 C -0.49 -26.56 10.99 67.76 0.74 -25.82 16 19 S 0.03 1.31 23.09 -56.49 -1.30 0.00 16 20 C -0.06 -2.45 5.91 -19.60 -0.12 -2.56 16 21 C -0.09 -3.68 8.75 71.24 0.62 -3.05 16 22 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 24 H 0.07 1.47 6.02 -2.38 -0.01 1.45 16 25 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 26 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 27 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 28 H 0.28 13.77 8.30 -92.71 -0.77 13.01 16 29 H 0.14 7.19 8.06 -2.91 -0.02 7.16 16 30 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.08 2.61 6.17 -2.39 -0.01 2.59 16 32 H 0.03 1.56 6.33 -2.39 -0.02 1.54 16 Total: -1.00 -67.38 287.56 4.64 -62.74 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 1.13 Total: 16.45 kcal Atomic # 6 Polarization: -58.40 SS G_CDS: 3.82 Total: -54.58 kcal Atomic # 7 Polarization: -65.43 SS G_CDS: -1.04 Total: -66.47 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -1.30 Total: 0.00 kcal Total: -67.38 4.64 -62.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405159577.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.776 kcal (2) G-P(sol) polarization free energy of solvation -67.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds