Wall clock time and date at job start Mon Mar 30 2020 06:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.50697 * 109.46987 * 225.24362 * 3 2 1 5 5 C 1.34922 * 126.04146 * 265.02904 * 4 3 2 6 6 N 1.36449 * 107.85825 * 179.97438 * 5 4 3 7 7 C 1.37137 * 126.00175 * 179.97438 * 6 5 4 8 8 H 1.08002 * 120.00412 * 0.02562 * 7 6 5 9 9 C 1.38934 * 119.99690 * 179.72022 * 7 6 5 10 10 N 1.31324 * 120.00167 * 0.27599 * 9 7 6 11 11 Si 1.86803 * 119.99846 * 180.27738 * 9 7 6 12 12 H 1.48498 * 109.47174 * 90.00091 * 11 9 7 13 13 H 1.48501 * 109.47062 * 210.00042 * 11 9 7 14 14 H 1.48504 * 109.46913 * 329.99841 * 11 9 7 15 15 N 1.40087 * 107.99183 * 0.22397 * 6 5 4 16 16 C 1.31871 * 108.13467 * 359.61738 * 15 6 5 17 17 C 1.48146 * 125.94953 * 180.13563 * 16 15 6 18 18 C 1.39447 * 122.80745 * 325.01705 * 17 16 15 19 19 C 1.32992 * 114.93086 * 179.80634 * 18 17 16 20 20 S 1.75803 * 109.98947 * 0.44303 * 19 18 17 21 21 C 1.34823 * 122.80293 * 145.31463 * 17 16 15 22 22 H 1.08997 * 109.46896 * 105.24377 * 3 2 1 23 23 H 1.09004 * 109.47437 * 345.24413 * 3 2 1 24 24 H 1.08004 * 126.06940 * 359.96044 * 5 4 3 25 25 H 0.96996 * 120.00281 * 179.97438 * 10 9 7 26 26 H 1.08001 * 122.53221 * 0.02562 * 18 17 16 27 27 H 1.08000 * 125.00273 * 180.22794 * 19 18 17 28 28 H 1.08001 * 125.24563 * 359.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1098 1.0013 1.0089 5 6 3.4630 2.2780 0.7528 6 7 3.8595 2.8463 1.9282 7 6 4.2954 4.1361 2.0933 8 1 4.3467 4.8017 1.2443 9 6 4.6650 4.5883 3.3539 10 7 4.6020 3.7792 4.3864 11 14 5.2514 6.3474 3.5802 12 1 4.0893 7.2220 3.8799 13 1 6.2182 6.4059 4.7058 14 1 5.9130 6.8127 2.3347 15 7 3.7484 1.8792 2.9356 16 6 3.2929 0.7685 2.3898 17 6 3.0255 -0.5036 3.1005 18 6 3.8035 -0.9507 4.1678 19 6 3.4210 -2.1113 4.6928 20 16 2.0186 -2.7279 3.8304 21 6 2.0131 -1.3285 2.7655 22 1 2.9711 0.2710 -0.9915 23 1 2.9718 -0.9930 0.2618 24 1 3.4367 2.7638 -0.2115 25 1 4.8603 4.0949 5.2664 26 1 4.6503 -0.3948 4.5423 27 1 3.9033 -2.6042 5.5239 28 1 1.3073 -1.1564 1.9663 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409441465.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:34 Heat of formation + Delta-G solvation = 134.774617 kcal Electronic energy + Delta-G solvation = -16026.368897 eV Core-core repulsion = 13363.967925 eV Total energy + Delta-G solvation = -2662.400972 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.047 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.84544 -37.14213 -36.16774 -33.78714 -31.70358 -30.42980 -28.83662 -26.82606 -24.92878 -23.23369 -20.83569 -19.38463 -18.16826 -17.87418 -16.87759 -16.55120 -15.54089 -14.68866 -14.25937 -14.05922 -13.64856 -13.27184 -12.87843 -12.56778 -12.37326 -12.26602 -11.96011 -11.83988 -11.54521 -11.42299 -11.28595 -10.99485 -10.85322 -10.55343 -10.39594 -9.61826 -8.97981 -8.65007 -8.26226 -7.55055 -7.41947 -6.70033 -4.41041 1.42043 2.09117 2.38956 2.86450 2.95076 2.99229 3.03667 3.22390 3.24821 3.49862 3.73432 4.17105 4.53440 4.80584 4.91477 5.36682 5.64117 5.68700 5.85438 5.95514 6.06769 6.12797 6.35255 6.54697 6.64615 6.87361 6.98466 7.07602 7.30309 7.71106 7.93282 8.07472 8.50100 9.19793 9.42762 10.25444 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021510 B = 0.006707 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.411036 B = 4173.689309 C = 5236.359226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.222 3.778 3 C 0.063 3.937 4 C -0.262 4.262 5 C -0.045 4.045 6 N -0.139 5.139 7 C -0.322 4.322 8 H 0.120 0.880 9 C 0.048 3.952 10 N -0.767 5.767 11 Si 0.935 3.065 12 H -0.270 1.270 13 H -0.275 1.275 14 H -0.262 1.262 15 N -0.240 5.240 16 C 0.033 3.967 17 C 0.018 3.982 18 C -0.103 4.103 19 C -0.220 4.220 20 S 0.059 5.941 21 C -0.219 4.219 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.150 0.850 25 H 0.277 0.723 26 H 0.145 0.855 27 H 0.160 0.840 28 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.522 -6.738 -2.492 7.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.094 4.094 3 C 0.022 3.978 4 C -0.277 4.277 5 C -0.193 4.193 6 N 0.095 4.905 7 C -0.455 4.455 8 H 0.138 0.862 9 C -0.170 4.170 10 N -0.393 5.393 11 Si 0.758 3.242 12 H -0.195 1.195 13 H -0.200 1.200 14 H -0.187 1.187 15 N -0.071 5.071 16 C -0.122 4.122 17 C 0.005 3.995 18 C -0.133 4.133 19 C -0.355 4.355 20 S 0.320 5.680 21 C -0.356 4.356 22 H 0.121 0.879 23 H 0.120 0.880 24 H 0.167 0.833 25 H 0.087 0.913 26 H 0.162 0.838 27 H 0.177 0.823 28 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.624 -7.446 -1.013 7.540 hybrid contribution 1.281 1.828 -0.676 2.332 sum 0.657 -5.618 -1.689 5.903 Atomic orbital electron populations 1.81119 1.13318 1.09980 1.10017 1.29766 0.95742 0.92019 0.91914 1.17349 0.80302 1.00334 0.99860 1.18733 1.20469 0.95296 0.93216 1.21749 1.11544 0.94069 0.91946 1.44771 1.34106 1.08190 1.03388 1.19950 1.44399 0.84371 0.96796 0.86228 1.25643 0.95932 1.00572 0.94881 1.70199 1.34399 1.34866 0.99818 0.85813 0.78981 0.80310 0.79050 1.19524 1.19991 1.18657 1.78601 1.23476 0.95051 1.10008 1.19981 1.07612 0.93218 0.91434 1.16957 0.94443 0.92792 0.95337 1.20306 1.01405 0.95450 0.96187 1.25290 1.02200 1.01484 1.06506 1.83869 1.30565 1.24613 1.28922 1.25609 1.04634 0.98777 1.06568 0.87917 0.87979 0.83285 0.91277 0.83780 0.82291 0.82595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -8.94 18.54 42.15 0.78 -8.16 15 2 C 0.22 3.80 13.09 -20.76 -0.27 3.53 15 3 C 0.06 0.94 5.35 -30.67 -0.16 0.78 15 4 C -0.26 -5.29 5.31 -104.66 -0.56 -5.84 15 5 C -0.04 -0.96 11.34 -16.67 -0.19 -1.15 15 6 N -0.14 -3.54 3.73 -11.65 -0.04 -3.58 15 7 C -0.32 -8.02 10.24 -14.92 -0.15 -8.17 15 8 H 0.12 2.66 7.83 -52.49 -0.41 2.24 15 9 C 0.05 1.16 5.50 -17.51 -0.10 1.06 15 10 N -0.77 -20.18 11.80 55.49 0.65 -19.52 15 11 Si 0.93 18.06 29.55 -169.99 -5.02 13.03 15 12 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 13 H -0.28 -5.28 7.11 56.52 0.40 -4.88 15 14 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 15 N -0.24 -6.34 10.44 33.48 0.35 -5.99 15 16 C 0.03 0.75 6.86 -82.65 -0.57 0.18 15 17 C 0.02 0.37 5.69 -106.59 -0.61 -0.24 15 18 C -0.10 -1.89 10.01 -40.95 -0.41 -2.30 15 19 C -0.22 -3.36 11.18 28.91 0.32 -3.04 15 20 S 0.06 0.87 23.32 -107.50 -2.51 -1.63 15 21 C -0.22 -3.90 9.84 29.52 0.29 -3.61 15 22 H 0.10 1.21 8.14 -51.93 -0.42 0.78 15 23 H 0.10 1.36 7.54 -51.93 -0.39 0.97 15 24 H 0.15 2.68 8.06 -52.48 -0.42 2.26 15 25 H 0.28 6.69 8.31 -40.82 -0.34 6.35 15 26 H 0.14 2.75 8.06 -52.49 -0.42 2.33 15 27 H 0.16 1.94 8.06 -52.49 -0.42 1.52 15 28 H 0.16 2.78 5.22 -52.49 -0.27 2.51 15 LS Contribution 274.31 15.07 4.13 4.13 Total: -1.00 -29.73 274.31 -5.96 -35.68 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -1.90 Total: 4.84 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -2.40 Total: -18.80 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 1.74 Total: -37.26 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.02 Total: 13.03 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.51 Total: -1.63 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.73 -5.96 -35.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409441465.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.458 kcal (2) G-P(sol) polarization free energy of solvation -29.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds