Wall clock time and date at job start Mon Mar 30 2020 06:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.50697 * 109.46987 * 225.24362 * 3 2 1 5 5 C 1.34922 * 126.04146 * 265.02904 * 4 3 2 6 6 N 1.36449 * 107.85825 * 179.97438 * 5 4 3 7 7 C 1.37137 * 126.00175 * 179.97438 * 6 5 4 8 8 H 1.08002 * 120.00412 * 0.02562 * 7 6 5 9 9 C 1.38934 * 119.99690 * 179.72022 * 7 6 5 10 10 N 1.31324 * 120.00167 * 0.27599 * 9 7 6 11 11 Si 1.86803 * 119.99846 * 180.27738 * 9 7 6 12 12 H 1.48498 * 109.47174 * 90.00091 * 11 9 7 13 13 H 1.48501 * 109.47062 * 210.00042 * 11 9 7 14 14 H 1.48504 * 109.46913 * 329.99841 * 11 9 7 15 15 N 1.40087 * 107.99183 * 0.22397 * 6 5 4 16 16 C 1.31871 * 108.13467 * 359.61738 * 15 6 5 17 17 C 1.48146 * 125.94953 * 180.13563 * 16 15 6 18 18 C 1.39447 * 122.80745 * 325.01705 * 17 16 15 19 19 C 1.32992 * 114.93086 * 179.80634 * 18 17 16 20 20 S 1.75803 * 109.98947 * 0.44303 * 19 18 17 21 21 C 1.34823 * 122.80293 * 145.31463 * 17 16 15 22 22 H 1.08997 * 109.46896 * 105.24377 * 3 2 1 23 23 H 1.09004 * 109.47437 * 345.24413 * 3 2 1 24 24 H 1.08004 * 126.06940 * 359.96044 * 5 4 3 25 25 H 0.96996 * 120.00281 * 179.97438 * 10 9 7 26 26 H 1.08001 * 122.53221 * 0.02562 * 18 17 16 27 27 H 1.08000 * 125.00273 * 180.22794 * 19 18 17 28 28 H 1.08001 * 125.24563 * 359.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1098 1.0013 1.0089 5 6 3.4630 2.2780 0.7528 6 7 3.8595 2.8463 1.9282 7 6 4.2954 4.1361 2.0933 8 1 4.3467 4.8017 1.2443 9 6 4.6650 4.5883 3.3539 10 7 4.6020 3.7792 4.3864 11 14 5.2514 6.3474 3.5802 12 1 4.0893 7.2220 3.8799 13 1 6.2182 6.4059 4.7058 14 1 5.9130 6.8127 2.3347 15 7 3.7484 1.8792 2.9356 16 6 3.2929 0.7685 2.3898 17 6 3.0255 -0.5036 3.1005 18 6 3.8035 -0.9507 4.1678 19 6 3.4210 -2.1113 4.6928 20 16 2.0186 -2.7279 3.8304 21 6 2.0131 -1.3285 2.7655 22 1 2.9711 0.2710 -0.9915 23 1 2.9718 -0.9930 0.2618 24 1 3.4367 2.7638 -0.2115 25 1 4.8603 4.0949 5.2664 26 1 4.6503 -0.3948 4.5423 27 1 3.9033 -2.6042 5.5239 28 1 1.3073 -1.1564 1.9663 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409441465.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:33 Heat of formation + Delta-G solvation = 117.596666 kcal Electronic energy + Delta-G solvation = -16027.113789 eV Core-core repulsion = 13363.967925 eV Total energy + Delta-G solvation = -2663.145864 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.047 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.52810 -38.57610 -37.58198 -35.49783 -33.27442 -32.07729 -30.29468 -28.43120 -26.57326 -24.72567 -22.43873 -20.98950 -19.68551 -19.50433 -18.25722 -17.96493 -17.19778 -16.18891 -15.80113 -15.39368 -15.26456 -14.84445 -14.38802 -13.97808 -13.77568 -13.70628 -13.53219 -13.27263 -13.02533 -12.94349 -12.83429 -12.60785 -12.20327 -12.03607 -11.74304 -11.30647 -10.66546 -10.30611 -9.60819 -9.14372 -8.99744 -8.46997 -6.25637 0.05828 0.80262 1.05340 1.28950 1.39951 1.48327 1.55988 1.71673 1.90424 1.98969 2.13916 2.58353 2.87143 3.09955 3.48128 4.08259 4.17023 4.34754 4.52020 4.61436 4.69469 4.85249 4.90847 5.04720 5.12541 5.25742 5.46339 5.57543 5.67303 6.02496 6.25401 6.69715 6.77109 7.47090 7.67656 8.51375 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021510 B = 0.006707 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.411036 B = 4173.689309 C = 5236.359226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.241 3.759 3 C 0.069 3.931 4 C -0.257 4.257 5 C -0.045 4.045 6 N -0.174 5.174 7 C -0.356 4.356 8 H 0.138 0.862 9 C -0.001 4.001 10 N -0.821 5.821 11 Si 1.011 2.989 12 H -0.269 1.269 13 H -0.276 1.276 14 H -0.245 1.245 15 N -0.293 5.293 16 C 0.020 3.980 17 C -0.010 4.010 18 C -0.137 4.137 19 C -0.201 4.201 20 S 0.136 5.864 21 C -0.226 4.226 22 H 0.147 0.853 23 H 0.125 0.875 24 H 0.183 0.817 25 H 0.275 0.725 26 H 0.123 0.877 27 H 0.194 0.806 28 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.301 -8.100 -3.561 8.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.075 4.075 3 C 0.028 3.972 4 C -0.273 4.273 5 C -0.193 4.193 6 N 0.059 4.941 7 C -0.488 4.488 8 H 0.155 0.845 9 C -0.213 4.213 10 N -0.448 5.448 11 Si 0.831 3.169 12 H -0.194 1.194 13 H -0.201 1.201 14 H -0.168 1.168 15 N -0.124 5.124 16 C -0.136 4.136 17 C -0.024 4.024 18 C -0.167 4.167 19 C -0.336 4.336 20 S 0.398 5.602 21 C -0.364 4.364 22 H 0.165 0.835 23 H 0.143 0.857 24 H 0.200 0.800 25 H 0.085 0.915 26 H 0.141 0.859 27 H 0.211 0.789 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.845 -8.802 -2.105 9.090 hybrid contribution 1.252 1.999 -0.392 2.391 sum 0.407 -6.804 -2.497 7.259 Atomic orbital electron populations 1.81142 1.14554 1.11233 1.11369 1.30010 0.95909 0.90874 0.90710 1.17593 0.78822 1.00135 1.00623 1.19225 1.19044 0.95793 0.93194 1.22547 1.09678 0.94709 0.92388 1.45020 1.36238 1.08567 1.04265 1.20530 1.45335 0.85022 0.97868 0.84478 1.26711 0.95502 1.04825 0.94265 1.70372 1.36989 1.37189 1.00300 0.84694 0.78243 0.74620 0.79349 1.19443 1.20125 1.16815 1.78490 1.25193 0.96578 1.12144 1.20652 1.06442 0.93465 0.93072 1.17050 0.96210 0.92518 0.96643 1.20167 1.02006 0.97151 0.97393 1.25706 1.01751 0.99985 1.06192 1.83632 1.28712 1.21453 1.26406 1.25710 1.03643 0.99965 1.07053 0.83549 0.85694 0.79952 0.91521 0.85930 0.78939 0.82717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -18.61 18.54 20.01 0.37 -18.23 15 2 C 0.24 7.72 13.09 89.44 1.17 8.89 15 3 C 0.07 1.87 5.35 28.04 0.15 2.02 15 4 C -0.26 -10.17 5.31 -19.89 -0.11 -10.27 15 5 C -0.04 -1.92 11.34 83.21 0.94 -0.97 15 6 N -0.17 -9.12 3.73 -190.77 -0.71 -9.83 15 7 C -0.36 -18.23 10.24 84.03 0.86 -17.37 15 8 H 0.14 6.15 7.83 -2.91 -0.02 6.12 15 9 C 0.00 -0.05 5.50 84.94 0.47 0.41 15 10 N -0.82 -45.62 11.80 21.65 0.26 -45.36 15 11 Si 1.01 37.91 29.55 68.60 2.03 39.94 15 12 H -0.27 -9.93 7.11 99.48 0.71 -9.22 15 13 H -0.28 -10.24 7.11 99.48 0.71 -9.53 15 14 H -0.25 -8.36 7.11 99.48 0.71 -7.65 15 15 N -0.29 -16.18 10.44 -47.99 -0.50 -16.68 15 16 C 0.02 0.94 6.86 42.51 0.29 1.23 15 17 C -0.01 -0.40 5.69 -21.14 -0.12 -0.52 15 18 C -0.14 -5.06 10.01 21.39 0.21 -4.85 15 19 C -0.20 -5.70 11.18 66.65 0.75 -4.95 15 20 S 0.14 3.59 23.32 -56.49 -1.32 2.27 15 21 C -0.23 -7.70 9.84 67.04 0.66 -7.04 15 22 H 0.15 2.77 8.14 -2.39 -0.02 2.75 15 23 H 0.13 2.92 7.54 -2.38 -0.02 2.90 15 24 H 0.18 6.20 8.06 -2.91 -0.02 6.18 15 25 H 0.28 14.16 8.31 -92.71 -0.77 13.39 15 26 H 0.12 4.98 8.06 -2.91 -0.02 4.96 15 27 H 0.19 4.03 8.06 -2.91 -0.02 4.01 15 28 H 0.16 5.25 5.22 -2.91 -0.02 5.23 15 Total: -1.00 -68.79 274.31 6.61 -62.19 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 1.20 Total: 19.14 kcal Atomic # 6 Polarization: -38.69 SS G_CDS: 5.28 Total: -33.42 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -0.59 Total: -90.11 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.32 Total: 2.27 kcal Total: -68.79 6.61 -62.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409441465.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.782 kcal (2) G-P(sol) polarization free energy of solvation -68.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds