Wall clock time and date at job start Mon Mar 30 2020 06:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39718 * 120.58916 * 171.30022 * 3 2 1 5 5 F 1.35107 * 120.01043 * 359.95283 * 4 3 2 6 6 C 1.38340 * 119.97915 * 179.97438 * 4 3 2 7 7 C 1.50702 * 119.37039 * 180.02562 * 6 4 3 8 8 F 1.39895 * 109.47044 * 180.02562 * 7 6 4 9 9 F 1.39893 * 109.47260 * 300.00388 * 7 6 4 10 10 F 1.39898 * 109.46772 * 60.00492 * 7 6 4 11 11 C 1.38636 * 121.25869 * 359.97438 * 6 4 3 12 12 C 1.37471 * 121.23193 * 0.02562 * 11 6 4 13 13 C 1.40824 * 119.90970 * 359.72939 * 12 11 6 14 14 C 1.40781 * 120.60403 * 180.27880 * 13 12 11 15 15 H 1.07996 * 120.00491 * 204.57760 * 14 13 12 16 16 C 1.40258 * 119.99588 * 24.57914 * 14 13 12 17 17 N 1.30657 * 119.99984 * 17.28686 * 16 14 13 18 18 Si 1.86795 * 119.99885 * 197.28254 * 16 14 13 19 19 H 1.48498 * 109.47004 * 60.00435 * 18 16 14 20 20 H 1.48507 * 109.47019 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47649 * 300.00374 * 18 16 14 22 22 H 1.07991 * 119.38062 * 179.97438 * 11 6 4 23 23 H 1.08003 * 120.04339 * 180.02562 * 12 11 6 24 24 H 0.96995 * 119.99696 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2784 1.1899 -0.1819 5 9 2.6147 2.3529 -0.3609 6 6 4.6618 1.1760 -0.1792 7 6 5.4143 2.4668 -0.3760 8 9 6.7898 2.2151 -0.3376 9 9 5.0762 3.0192 -1.6160 10 9 5.0752 3.3641 0.6423 11 6 5.3690 -0.0025 0.0023 12 6 4.7216 -1.2013 0.1857 13 6 3.3141 -1.2447 0.1970 14 6 2.6362 -2.4634 0.3896 15 1 1.6295 -2.5859 0.0182 16 6 3.2682 -3.5185 1.0637 17 7 4.3228 -3.2854 1.7990 18 14 2.6022 -5.2569 0.9104 19 1 2.6301 -5.6738 -0.5146 20 1 3.4421 -6.1815 1.7137 21 1 1.2046 -5.2976 1.4107 22 1 6.4487 0.0216 -0.0013 23 1 5.2918 -2.1078 0.3258 24 1 4.7597 -4.0150 2.2654 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575645096.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:47 Heat of formation + Delta-G solvation = -175.108148 kcal Electronic energy + Delta-G solvation = -18728.967589 eV Core-core repulsion = 14912.766424 eV Total energy + Delta-G solvation = -3816.201165 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.03383 -50.01446 -48.47255 -48.44960 -39.51959 -37.18098 -36.08610 -32.72064 -31.37051 -28.96276 -25.72755 -24.47604 -22.90839 -20.21406 -19.72531 -19.33717 -19.33240 -17.99716 -17.49865 -17.33178 -16.70655 -16.41708 -15.45369 -15.33963 -15.14969 -14.91444 -14.67823 -14.64539 -14.55264 -14.49621 -14.35762 -13.98347 -13.72687 -13.32276 -13.13335 -12.90580 -12.60470 -12.25269 -12.09070 -11.81416 -11.30912 -9.87270 -9.61129 -9.08042 -6.89126 0.12678 0.37653 1.37554 1.45171 1.51998 1.78380 1.95036 2.08625 2.11775 2.44185 2.98163 3.08227 3.22593 3.36893 3.49605 3.66752 4.24496 4.63187 4.64491 4.87484 5.06901 5.24768 5.52874 5.59910 5.80159 6.17491 6.35928 6.44177 6.74893 7.84927 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.026347 B = 0.007292 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.486253 B = 3838.915003 C = 4664.271306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.301 3.699 3 C -0.236 4.236 4 C 0.225 3.775 5 F -0.145 7.145 6 C -0.358 4.358 7 C 0.527 3.473 8 F -0.175 7.175 9 F -0.189 7.189 10 F -0.190 7.190 11 C -0.020 4.020 12 C -0.171 4.171 13 C 0.149 3.851 14 C -0.412 4.412 15 H 0.086 0.914 16 C 0.044 3.956 17 N -0.752 5.752 18 Si 0.986 3.014 19 H -0.252 1.252 20 H -0.251 1.251 21 H -0.267 1.267 22 H 0.146 0.854 23 H 0.143 0.857 24 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.452 -1.074 -1.083 6.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.009 4.009 3 C -0.243 4.243 4 C 0.203 3.797 5 F -0.124 7.124 6 C -0.362 4.362 7 C 0.473 3.527 8 F -0.156 7.156 9 F -0.170 7.170 10 F -0.172 7.172 11 C -0.039 4.039 12 C -0.190 4.190 13 C 0.143 3.857 14 C -0.437 4.437 15 H 0.104 0.896 16 C -0.182 4.182 17 N -0.372 5.372 18 Si 0.805 3.195 19 H -0.175 1.175 20 H -0.174 1.174 21 H -0.191 1.191 22 H 0.164 0.836 23 H 0.160 0.840 24 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.890 -1.081 -0.905 5.089 hybrid contribution -0.004 0.088 0.008 0.088 sum 4.886 -0.993 -0.898 5.066 Atomic orbital electron populations 1.81012 1.12661 1.09515 1.15232 1.25460 0.92468 0.91721 0.91212 1.16771 0.83761 0.93562 1.30200 1.17043 0.88802 0.79340 0.94500 1.91446 1.81471 1.47270 1.92199 1.19028 0.90843 0.94472 1.31814 1.17935 0.77100 0.84304 0.73350 1.93101 1.32102 1.94168 1.96225 1.93157 1.92269 1.87494 1.44097 1.93159 1.92250 1.71107 1.60661 1.20540 1.00030 0.89812 0.93485 1.21304 0.92839 0.97856 1.06996 1.18602 0.92439 0.89065 0.85620 1.20204 1.01466 0.95860 1.26123 0.89585 1.26929 0.94097 1.05494 0.91673 1.69645 1.14521 1.38121 1.14864 0.85129 0.79382 0.74301 0.80666 1.17544 1.17428 1.19116 0.83607 0.83985 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.22 18.54 19.00 0.35 -23.87 14 2 C 0.30 14.16 13.96 88.33 1.23 15.39 14 3 C -0.24 -10.71 5.95 -19.52 -0.12 -10.83 14 4 C 0.23 9.72 7.08 22.65 0.16 9.88 14 5 F -0.15 -6.27 15.91 44.97 0.72 -5.55 14 6 C -0.36 -14.07 5.39 -19.74 -0.11 -14.18 14 7 C 0.53 18.99 3.00 71.24 0.21 19.20 14 8 F -0.17 -5.66 15.89 44.97 0.71 -4.94 14 9 F -0.19 -6.84 17.00 44.97 0.76 -6.07 14 10 F -0.19 -7.01 17.00 44.97 0.76 -6.24 14 11 C -0.02 -0.72 9.35 22.18 0.21 -0.52 14 12 C -0.17 -6.89 8.70 22.72 0.20 -6.70 14 13 C 0.15 6.62 5.74 -19.87 -0.11 6.51 14 14 C -0.41 -17.98 8.58 23.38 0.20 -17.78 14 15 H 0.09 3.83 7.38 -2.91 -0.02 3.81 14 16 C 0.04 1.69 5.16 85.36 0.44 2.13 14 17 N -0.75 -29.01 10.94 21.88 0.24 -28.77 14 18 Si 0.99 29.51 29.59 68.60 2.03 31.54 14 19 H -0.25 -7.43 7.11 99.48 0.71 -6.73 14 20 H -0.25 -6.76 7.11 99.48 0.71 -6.05 14 21 H -0.27 -8.38 7.11 99.48 0.71 -7.67 14 22 H 0.15 4.52 7.06 -2.92 -0.02 4.50 14 23 H 0.14 5.55 6.17 -2.91 -0.02 5.54 14 24 H 0.31 10.44 8.29 -92.71 -0.77 9.67 14 Total: -1.00 -46.92 248.02 9.19 -37.73 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: 1.29 Total: 3.07 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 2.32 Total: 3.11 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.59 Total: -52.64 kcal Atomic # 9 Polarization: -25.77 SS G_CDS: 2.96 Total: -22.81 kcal Atomic # 14 Polarization: 29.51 SS G_CDS: 2.03 Total: 31.54 kcal Total: -46.92 9.19 -37.73 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645096.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.382 kcal (2) G-P(sol) polarization free energy of solvation -46.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds