Wall clock time and date at job start Mon Mar 30 2020 06:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39455 * 120.05347 * 102.28038 * 3 2 1 5 5 F 1.35095 * 120.24764 * 359.94903 * 4 3 2 6 6 C 1.40820 * 119.50590 * 179.69968 * 4 3 2 7 7 C 1.41315 * 120.19688 * 180.29111 * 6 4 3 8 8 H 1.07994 * 119.99577 * 24.92603 * 7 6 4 9 9 C 1.39938 * 120.00003 * 204.93289 * 7 6 4 10 10 N 1.30847 * 120.00126 * 17.81583 * 9 7 6 11 11 Si 1.86795 * 120.00078 * 197.81435 * 9 7 6 12 12 H 1.48506 * 109.46903 * 59.99772 * 11 9 7 13 13 H 1.48498 * 109.47565 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47295 * 300.00415 * 11 9 7 15 15 C 1.40758 * 119.60845 * 0.54461 * 6 4 3 16 16 C 1.37702 * 120.09677 * 359.44853 * 15 6 4 17 17 C 1.38380 * 120.50255 * 0.27965 * 16 15 6 18 18 C 1.50697 * 119.80380 * 180.02562 * 17 16 15 19 19 F 1.39903 * 109.47221 * 359.97438 * 18 17 16 20 20 F 1.39897 * 109.47128 * 119.99750 * 18 17 16 21 21 F 1.39905 * 109.47047 * 240.00039 * 18 17 16 22 22 H 0.96994 * 119.99986 * 180.02562 * 10 9 7 23 23 H 1.07997 * 119.95075 * 179.72724 * 15 6 4 24 24 H 1.07994 * 119.74894 * 180.25199 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2663 0.2577 -1.1794 5 9 2.5968 0.5060 -2.3263 6 6 4.6744 0.2617 -1.1649 7 6 5.3967 0.5265 -2.3504 8 1 4.9416 1.1023 -3.1426 9 6 6.7014 0.0425 -2.4976 10 7 7.1314 -0.9242 -1.7278 11 14 7.8292 0.7765 -3.7932 12 1 8.0121 2.2259 -3.5266 13 1 9.1475 0.0947 -3.7457 14 1 7.2246 0.5930 -5.1372 15 6 5.3583 -0.0048 0.0361 16 6 4.6525 -0.2565 1.1914 17 6 3.2687 -0.2560 1.1833 18 6 2.5121 -0.5329 2.4568 19 9 3.4187 -0.7586 3.4982 20 9 1.7067 0.5675 2.7694 21 9 1.7086 -1.6652 2.2851 22 1 8.0359 -1.2593 -1.8296 23 1 6.4381 -0.0075 0.0526 24 1 5.1829 -0.4564 2.1106 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575645987.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:57 Heat of formation + Delta-G solvation = -169.570805 kcal Electronic energy + Delta-G solvation = -18774.120765 eV Core-core repulsion = 14958.159718 eV Total energy + Delta-G solvation = -3815.961047 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.07491 -49.55545 -48.58298 -48.55648 -39.79664 -37.68742 -35.95911 -32.64747 -31.65835 -28.83751 -25.95242 -24.39212 -22.78785 -20.67922 -19.41584 -19.40712 -19.37580 -18.17861 -17.43197 -17.12486 -16.45046 -16.33455 -15.54799 -15.50642 -15.26927 -15.02150 -14.76914 -14.74537 -14.69450 -14.43283 -14.34591 -14.11864 -13.83715 -13.38210 -13.21904 -12.83463 -12.69803 -12.24581 -12.05406 -11.78780 -11.22774 -9.88727 -9.62399 -8.91961 -6.66939 -0.20303 0.45126 1.41326 1.44055 1.48954 1.57225 1.80280 1.94720 2.17035 2.44528 2.71368 2.92890 3.17596 3.18163 3.59303 3.73150 4.30159 4.52612 4.76358 4.99811 5.03805 5.21076 5.53220 5.72437 5.80649 6.23144 6.28645 6.48246 6.53299 8.03170 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.029537 B = 0.007066 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.742889 B = 3961.540046 C = 4668.133916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.264 3.736 3 C 0.008 3.992 4 C 0.008 3.992 5 F -0.151 7.151 6 C 0.076 3.924 7 C -0.445 4.445 8 H 0.091 0.909 9 C 0.043 3.957 10 N -0.779 5.779 11 Si 0.988 3.012 12 H -0.255 1.255 13 H -0.260 1.260 14 H -0.263 1.263 15 C -0.141 4.141 16 C -0.046 4.046 17 C -0.267 4.267 18 C 0.520 3.480 19 F -0.171 7.171 20 F -0.189 7.189 21 F -0.191 7.191 22 H 0.306 0.694 23 H 0.142 0.858 24 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 0.901 2.966 5.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.050 4.050 3 C 0.004 3.996 4 C -0.015 4.015 5 F -0.130 7.130 6 C 0.072 3.928 7 C -0.470 4.470 8 H 0.109 0.891 9 C -0.178 4.178 10 N -0.401 5.401 11 Si 0.808 3.192 12 H -0.179 1.179 13 H -0.184 1.184 14 H -0.187 1.187 15 C -0.161 4.161 16 C -0.065 4.065 17 C -0.272 4.272 18 C 0.467 3.533 19 F -0.152 7.152 20 F -0.171 7.171 21 F -0.173 7.173 22 H 0.118 0.882 23 H 0.159 0.841 24 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.385 0.716 3.014 3.909 hybrid contribution 0.299 0.088 -0.534 0.619 sum 2.684 0.804 2.479 3.742 Atomic orbital electron populations 1.81049 1.12245 1.09959 1.08152 1.25886 0.93006 0.93013 0.93093 1.15304 0.82973 1.07313 0.94035 1.17756 0.90299 1.13381 0.80103 1.91328 1.80566 1.92559 1.48523 1.17928 0.88254 0.90857 0.95768 1.20031 0.98525 1.27265 1.01216 0.89120 1.26802 0.98949 0.92910 0.99177 1.69738 1.19707 1.16732 1.33919 0.85110 0.76744 0.79764 0.77601 1.17899 1.18372 1.18737 1.21313 1.00579 1.04525 0.89672 1.20668 0.90418 0.95931 0.99492 1.18930 0.94725 1.23730 0.89848 1.18117 0.76974 0.73582 0.84669 1.93119 1.66881 1.94565 1.60669 1.93166 1.75275 1.54608 1.94042 1.93168 1.75433 1.53055 1.95620 0.88199 0.84071 0.83289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -19.12 18.54 19.00 0.35 -18.77 14 2 C 0.26 11.39 12.77 88.33 1.13 12.52 14 3 C 0.01 0.36 5.71 -21.34 -0.12 0.24 14 4 C 0.01 0.35 7.28 23.20 0.17 0.51 14 5 F -0.15 -6.95 16.26 44.97 0.73 -6.21 14 6 C 0.08 3.43 5.57 -21.27 -0.12 3.31 14 7 C -0.44 -19.75 8.78 23.44 0.21 -19.55 14 8 H 0.09 3.99 7.74 -2.91 -0.02 3.96 14 9 C 0.04 1.74 5.13 85.25 0.44 2.17 14 10 N -0.78 -31.64 10.96 21.83 0.24 -31.40 14 11 Si 0.99 30.37 29.59 68.60 2.03 32.40 14 12 H -0.26 -7.73 7.11 99.48 0.71 -7.02 14 13 H -0.26 -7.41 7.11 99.48 0.71 -6.71 14 14 H -0.26 -8.20 7.11 99.48 0.71 -7.50 14 15 C -0.14 -5.77 8.69 22.76 0.20 -5.58 14 16 C -0.05 -1.71 9.39 22.18 0.21 -1.51 14 17 C -0.27 -10.44 5.42 -19.43 -0.11 -10.55 14 18 C 0.52 18.91 2.88 71.23 0.21 19.12 14 19 F -0.17 -5.54 15.95 44.97 0.72 -4.83 14 20 F -0.19 -7.03 16.50 44.97 0.74 -6.28 14 21 F -0.19 -7.22 16.51 44.97 0.74 -6.48 14 22 H 0.31 10.93 8.30 -92.71 -0.77 10.16 14 23 H 0.14 5.71 6.15 -2.91 -0.02 5.69 14 24 H 0.15 4.59 7.12 -2.91 -0.02 4.57 14 Total: -1.00 -46.77 246.57 9.05 -37.71 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 1.29 Total: 3.15 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 2.21 Total: 0.70 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.59 Total: -50.17 kcal Atomic # 9 Polarization: -26.73 SS G_CDS: 2.93 Total: -23.80 kcal Atomic # 14 Polarization: 30.37 SS G_CDS: 2.03 Total: 32.40 kcal Total: -46.77 9.05 -37.71 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645987.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.856 kcal (2) G-P(sol) polarization free energy of solvation -46.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds