Wall clock time and date at job start Mon Mar 30 2020 06:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39055 * 120.05538 * 330.64527 * 3 2 1 5 5 C 1.40466 * 119.61894 * 179.97438 * 4 3 2 6 6 C 1.41360 * 120.13685 * 180.02562 * 5 4 3 7 7 H 1.08004 * 119.99862 * 204.51965 * 6 5 4 8 8 C 1.39899 * 120.00132 * 24.52362 * 6 5 4 9 9 N 1.30862 * 120.00214 * 17.94185 * 8 6 5 10 10 Si 1.86804 * 120.00111 * 197.94434 * 8 6 5 11 11 H 1.48497 * 109.47131 * 89.99542 * 10 8 6 12 12 H 1.48500 * 109.47245 * 209.99957 * 10 8 6 13 13 H 1.48504 * 109.46740 * 329.99791 * 10 8 6 14 14 C 1.40884 * 119.72156 * 359.97438 * 5 4 3 15 15 C 1.37538 * 120.10186 * 0.02562 * 14 5 4 16 16 C 1.50694 * 119.80506 * 180.02562 * 15 14 5 17 17 F 1.39898 * 109.47481 * 0.02562 * 16 15 14 18 18 F 1.39906 * 109.46638 * 120.00272 * 16 15 14 19 19 F 1.39896 * 109.47267 * 240.00088 * 16 15 14 20 20 C 1.38743 * 120.38476 * 0.02562 * 15 14 5 21 21 F 1.35100 * 119.85964 * 179.97438 * 20 15 14 22 22 H 1.07996 * 120.19144 * 359.95674 * 4 3 2 23 23 H 0.96993 * 119.99822 * 180.02562 * 9 8 6 24 24 H 1.08001 * 119.94454 * 180.29871 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2649 -1.0481 0.5900 5 6 4.6695 -1.0384 0.5843 6 6 5.3890 -2.0992 1.1804 7 1 6.3965 -1.9366 1.5342 8 6 4.7962 -3.3595 1.3121 9 7 3.7461 -3.6669 0.5943 10 14 5.5035 -4.6035 2.5128 11 1 4.8563 -4.4352 3.8387 12 1 5.2499 -5.9773 2.0090 13 1 6.9667 -4.3871 2.6452 14 6 5.3582 0.0324 -0.0190 15 6 4.6573 1.0638 -0.5993 16 6 5.4008 2.2055 -1.2432 17 9 6.7781 1.9911 -1.1247 18 9 5.0560 2.2818 -2.5970 19 9 5.0583 3.4031 -0.6065 20 6 3.2699 1.0591 -0.5952 21 9 2.5922 2.0779 -1.1678 22 1 2.7293 -1.8652 1.0502 23 1 3.3349 -4.5405 0.6859 24 1 6.4381 0.0411 -0.0297 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575646390.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:22 Heat of formation + Delta-G solvation = -168.746759 kcal Electronic energy + Delta-G solvation = -18704.409141 eV Core-core repulsion = 14888.483827 eV Total energy + Delta-G solvation = -3815.925314 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.14061 -49.72394 -48.57384 -48.57278 -39.86289 -37.58504 -35.78429 -32.90031 -32.00660 -27.40331 -26.77518 -24.70712 -22.92741 -20.71540 -19.45561 -19.45096 -18.64374 -18.12387 -17.97487 -17.16110 -16.57702 -16.48899 -15.43593 -15.43309 -15.08375 -15.01185 -14.77326 -14.74414 -14.73480 -14.49489 -14.43089 -13.92675 -13.72314 -13.55620 -13.24409 -12.84434 -12.66877 -12.35575 -11.94236 -11.81802 -11.14502 -10.06645 -9.63090 -8.84106 -6.50840 -0.07310 0.25156 1.41293 1.49128 1.49726 1.61220 1.74575 1.91696 2.19940 2.53514 2.70201 2.90444 3.19599 3.23722 3.45406 3.53950 4.24433 4.62624 4.67037 4.91093 5.12093 5.25691 5.39923 5.65562 5.75300 6.26498 6.38978 6.57327 6.66744 8.12759 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.020605 B = 0.007948 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.541416 B = 3522.184887 C = 4635.425731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.284 3.716 3 C -0.041 4.041 4 C -0.080 4.080 5 C 0.078 3.922 6 C -0.450 4.450 7 H 0.106 0.894 8 C 0.039 3.961 9 N -0.805 5.805 10 Si 0.985 3.015 11 H -0.263 1.263 12 H -0.274 1.274 13 H -0.250 1.250 14 C -0.136 4.136 15 C -0.172 4.172 16 C 0.518 3.482 17 F -0.170 7.170 18 F -0.181 7.181 19 F -0.179 7.179 20 C 0.021 3.979 21 F -0.151 7.151 22 H 0.135 0.865 23 H 0.299 0.701 24 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.892 1.981 0.943 6.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.030 4.030 3 C -0.045 4.045 4 C -0.102 4.102 5 C 0.075 3.925 6 C -0.477 4.477 7 H 0.124 0.876 8 C -0.180 4.180 9 N -0.429 5.429 10 Si 0.806 3.194 11 H -0.188 1.188 12 H -0.198 1.198 13 H -0.173 1.173 14 C -0.155 4.155 15 C -0.175 4.175 16 C 0.464 3.536 17 F -0.151 7.151 18 F -0.163 7.163 19 F -0.161 7.161 20 C -0.002 4.002 21 F -0.130 7.130 22 H 0.152 0.848 23 H 0.110 0.890 24 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.962 1.857 0.826 4.453 hybrid contribution 0.322 -0.154 -0.013 0.357 sum 4.284 1.703 0.813 4.681 Atomic orbital electron populations 1.81073 1.12412 1.09510 1.10468 1.25733 0.92716 0.92174 0.92345 1.15740 0.83606 0.97811 1.07361 1.21523 0.94789 0.95325 0.98596 1.17685 0.91143 0.92836 0.90879 1.20045 1.02249 0.93382 1.32017 0.87612 1.26833 0.94297 1.01281 0.95595 1.69772 1.18386 1.23726 1.31005 0.85103 0.80229 0.76115 0.77983 1.18776 1.19845 1.17348 1.21110 1.00246 0.94145 1.00048 1.19511 0.91678 0.98010 1.08274 1.18058 0.77266 0.82026 0.76223 1.93147 1.31452 1.94719 1.95759 1.93185 1.92077 1.96598 1.34419 1.93183 1.92118 1.48901 1.81878 1.16601 0.88117 0.88218 1.07271 1.91391 1.80380 1.57895 1.83380 0.84760 0.89012 0.83622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -19.76 18.54 19.00 0.35 -19.41 14 2 C 0.28 12.03 14.95 88.33 1.32 13.36 14 3 C -0.04 -1.71 5.73 -21.35 -0.12 -1.83 14 4 C -0.08 -3.45 8.39 23.01 0.19 -3.25 14 5 C 0.08 3.29 5.57 -21.32 -0.12 3.17 14 6 C -0.45 -18.51 9.04 23.44 0.21 -18.30 14 7 H 0.11 3.99 7.91 -2.91 -0.02 3.97 14 8 C 0.04 1.54 5.13 85.24 0.44 1.98 14 9 N -0.81 -34.29 10.96 21.82 0.24 -34.05 14 10 Si 0.99 30.46 29.60 68.60 2.03 32.49 14 11 H -0.26 -8.10 7.11 99.48 0.71 -7.39 14 12 H -0.27 -8.38 7.11 99.48 0.71 -7.68 14 13 H -0.25 -7.41 7.11 99.48 0.71 -6.71 14 14 C -0.14 -5.22 9.16 22.75 0.21 -5.01 14 15 C -0.17 -6.66 5.36 -19.91 -0.11 -6.76 14 16 C 0.52 18.13 3.02 71.23 0.22 18.34 14 17 F -0.17 -5.42 15.94 44.97 0.72 -4.70 14 18 F -0.18 -6.44 17.04 44.97 0.77 -5.67 14 19 F -0.18 -6.24 17.04 44.97 0.77 -5.47 14 20 C 0.02 0.86 7.12 22.88 0.16 1.02 14 21 F -0.15 -6.29 15.95 44.97 0.72 -5.57 14 22 H 0.13 5.98 6.16 -2.91 -0.02 5.97 14 23 H 0.30 11.56 8.30 -92.71 -0.77 10.80 14 24 H 0.15 5.00 7.12 -2.91 -0.02 4.98 14 Total: -1.00 -45.01 249.35 9.28 -35.73 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.29 Total: 3.93 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 2.40 Total: 2.72 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.59 Total: -53.46 kcal Atomic # 9 Polarization: -24.38 SS G_CDS: 2.97 Total: -21.42 kcal Atomic # 14 Polarization: 30.46 SS G_CDS: 2.03 Total: 32.49 kcal Total: -45.01 9.28 -35.73 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646390.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.013 kcal (2) G-P(sol) polarization free energy of solvation -45.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds