Wall clock time and date at job start Mon Mar 30 2020 06:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39427 * 120.56355 * 189.83335 * 3 2 1 5 5 C 1.38076 * 120.11493 * 180.28118 * 4 3 2 6 6 C 1.50697 * 119.32852 * 179.70905 * 5 4 3 7 7 F 1.39904 * 109.47366 * 179.97438 * 6 5 4 8 8 F 1.39899 * 109.47354 * 299.97681 * 6 5 4 9 9 F 1.39902 * 109.47134 * 59.97957 * 6 5 4 10 10 C 1.38590 * 121.34062 * 359.69291 * 5 4 3 11 11 C 1.37756 * 121.16257 * 0.02562 * 10 5 4 12 12 F 1.35103 * 120.11902 * 180.02562 * 11 10 5 13 13 C 1.41149 * 119.77396 * 0.02562 * 11 10 5 14 14 C 1.40646 * 120.63389 * 179.97438 * 13 11 10 15 15 H 1.08008 * 119.99874 * 145.63788 * 14 13 11 16 16 C 1.40269 * 120.00250 * 325.64516 * 14 13 11 17 17 N 1.30664 * 120.00228 * 149.31245 * 16 14 13 18 18 Si 1.86794 * 119.99954 * 329.03453 * 16 14 13 19 19 H 1.48499 * 109.47302 * 270.27921 * 18 16 14 20 20 H 1.48501 * 109.47140 * 30.27419 * 18 16 14 21 21 H 1.48500 * 109.47173 * 150.27832 * 18 16 14 22 22 H 1.08006 * 119.93917 * 359.97438 * 4 3 2 23 23 H 1.08005 * 119.41849 * 180.02562 * 10 5 4 24 24 H 0.97000 * 119.99711 * 354.59324 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2764 1.1839 0.2050 5 6 4.6571 1.1749 0.1974 6 6 5.4049 2.4651 0.4143 7 9 6.7815 2.2200 0.3670 8 9 5.0592 3.3786 -0.5873 9 9 5.0684 2.9946 1.6648 10 6 5.3692 0.0033 -0.0053 11 6 4.7242 -1.1970 -0.2075 12 9 5.4394 -2.3265 -0.4026 13 6 3.3135 -1.2429 -0.2102 14 6 2.6363 -2.4584 -0.4155 15 1 1.7015 -2.6480 0.0911 16 6 3.1752 -3.4245 -1.2779 17 7 2.9567 -4.6935 -1.0556 18 14 4.1986 -2.8968 -2.7487 19 1 3.3114 -2.6947 -3.9223 20 1 4.8996 -1.6261 -2.4336 21 1 5.1985 -3.9498 -3.0595 22 1 2.7442 2.1100 0.3652 23 1 6.4489 0.0319 -0.0048 24 1 2.4892 -4.9716 -0.2526 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575646519.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:16 Heat of formation + Delta-G solvation = -170.998316 kcal Electronic energy + Delta-G solvation = -18781.350685 eV Core-core repulsion = 14965.327736 eV Total energy + Delta-G solvation = -3816.022949 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.93800 -49.71115 -48.46523 -48.38959 -39.66855 -37.17020 -36.22478 -33.04018 -31.69633 -28.78949 -25.47106 -24.50555 -22.79760 -20.76848 -20.23718 -19.26348 -19.21002 -17.79708 -17.42714 -16.93440 -16.74664 -16.60630 -15.49705 -15.32659 -15.18281 -15.02794 -14.86412 -14.63852 -14.58274 -14.54820 -14.49806 -14.06225 -13.63505 -13.40165 -13.14500 -12.72490 -12.53875 -12.40271 -11.89651 -11.52841 -11.21117 -10.03451 -9.75494 -9.64018 -7.00327 -0.07257 0.28504 1.38160 1.44727 1.67660 1.78779 1.92844 1.94234 2.11290 2.37041 2.93300 2.98482 3.18563 3.39561 3.70366 3.78706 4.13342 4.15589 4.48221 4.85376 5.04504 5.13216 5.23433 5.33265 5.54622 5.83184 6.07673 6.27203 6.71688 7.54479 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.022664 B = 0.008689 C = 0.007033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.139603 B = 3221.682731 C = 3980.366804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C 0.304 3.696 3 C -0.163 4.163 4 C 0.040 3.960 5 C -0.300 4.300 6 C 0.531 3.469 7 F -0.181 7.181 8 F -0.183 7.183 9 F -0.184 7.184 10 C -0.031 4.031 11 C -0.030 4.030 12 F -0.143 7.143 13 C 0.100 3.900 14 C -0.489 4.489 15 H 0.073 0.927 16 C 0.028 3.972 17 N -0.767 5.767 18 Si 1.091 2.909 19 H -0.277 1.277 20 H -0.245 1.245 21 H -0.262 1.262 22 H 0.146 0.854 23 H 0.152 0.848 24 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.625 8.331 0.104 11.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.006 4.006 3 C -0.169 4.169 4 C 0.019 3.981 5 C -0.303 4.303 6 C 0.477 3.523 7 F -0.163 7.163 8 F -0.165 7.165 9 F -0.166 7.166 10 C -0.051 4.051 11 C -0.050 4.050 12 F -0.123 7.123 13 C 0.093 3.907 14 C -0.514 4.514 15 H 0.091 0.909 16 C -0.197 4.197 17 N -0.385 5.385 18 Si 0.909 3.091 19 H -0.204 1.204 20 H -0.169 1.169 21 H -0.186 1.186 22 H 0.164 0.836 23 H 0.169 0.831 24 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.620 7.611 -1.135 10.151 hybrid contribution -0.656 -0.076 1.704 1.827 sum 5.964 7.535 0.568 9.626 Atomic orbital electron populations 1.81078 1.12962 1.09763 1.14330 1.25504 0.92434 0.91454 0.91229 1.16453 0.83352 0.93227 1.23851 1.20527 0.92084 0.96424 0.89057 1.18719 0.93566 0.92154 1.25866 1.17862 0.76673 0.84216 0.73563 1.93117 1.32624 1.94311 1.96209 1.93182 1.91980 1.69765 1.61533 1.93180 1.92209 1.88158 1.43008 1.20570 1.00968 0.89458 0.94072 1.17222 0.88434 0.82635 1.16670 1.91122 1.77583 1.50180 1.93375 1.18654 0.90413 0.91613 0.89971 1.20817 1.07615 0.99774 1.23164 0.90890 1.28683 0.95400 0.91739 1.03919 1.70492 1.24063 1.17895 1.26016 0.83433 0.75880 0.78967 0.70772 1.20436 1.16916 1.18576 0.83588 0.83065 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.17 18.54 19.00 0.35 -21.82 14 2 C 0.30 12.73 14.44 88.33 1.28 14.01 14 3 C -0.16 -6.43 5.94 -19.59 -0.12 -6.55 14 4 C 0.04 1.32 9.25 22.52 0.21 1.53 14 5 C -0.30 -9.57 5.38 -19.82 -0.11 -9.68 14 6 C 0.53 14.94 3.30 71.24 0.23 15.17 14 7 F -0.18 -4.93 15.89 44.97 0.71 -4.21 14 8 F -0.18 -5.09 17.22 44.97 0.77 -4.31 14 9 F -0.18 -5.13 17.22 44.97 0.77 -4.35 14 10 C -0.03 -1.05 9.33 22.24 0.21 -0.84 14 11 C -0.03 -1.19 5.10 22.87 0.12 -1.07 14 12 F -0.14 -5.90 12.85 44.97 0.58 -5.32 14 13 C 0.10 4.30 5.04 -19.82 -0.10 4.20 14 14 C -0.49 -23.20 8.64 23.35 0.20 -23.00 14 15 H 0.07 3.74 7.78 -2.91 -0.02 3.72 14 16 C 0.03 1.28 4.69 85.36 0.40 1.68 14 17 N -0.77 -36.63 13.64 21.88 0.30 -36.33 14 18 Si 1.09 42.73 25.87 68.60 1.77 44.50 14 19 H -0.28 -10.42 7.11 99.48 0.71 -9.71 14 20 H -0.25 -9.13 5.35 99.48 0.53 -8.59 14 21 H -0.26 -9.86 7.11 99.48 0.71 -9.15 14 22 H 0.15 4.02 8.06 -2.91 -0.02 4.00 14 23 H 0.15 4.35 7.06 -2.91 -0.02 4.33 14 24 H 0.29 13.79 8.73 -92.71 -0.81 12.98 14 Total: -1.00 -47.48 243.54 8.66 -38.82 By element: Atomic # 1 Polarization: -3.50 SS G_CDS: 1.07 Total: -2.43 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 2.32 Total: -4.55 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 0.65 Total: -58.15 kcal Atomic # 9 Polarization: -21.04 SS G_CDS: 2.84 Total: -18.20 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.77 Total: 44.50 kcal Total: -47.48 8.66 -38.82 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646519.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.177 kcal (2) G-P(sol) polarization free energy of solvation -47.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds