Wall clock time and date at job start Mon Mar 30 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39512 * 120.55174 * 289.93468 * 3 2 1 5 5 C 1.37918 * 120.07665 * 180.02562 * 4 3 2 6 6 C 1.38990 * 121.26306 * 0.02562 * 5 4 3 7 7 F 1.35099 * 119.43593 * 179.97438 * 6 5 4 8 8 C 1.37701 * 121.13443 * 359.71201 * 6 5 4 9 9 C 1.50698 * 120.08765 * 180.28936 * 8 6 5 10 10 F 1.39903 * 109.47290 * 265.09549 * 9 8 6 11 11 F 1.39898 * 109.47369 * 25.09576 * 9 8 6 12 12 F 1.39903 * 109.47126 * 145.09653 * 9 8 6 13 13 C 1.40760 * 119.81995 * 0.56454 * 8 6 5 14 14 C 1.40813 * 120.59996 * 179.71615 * 13 8 6 15 15 H 1.07998 * 120.00328 * 317.31554 * 14 13 8 16 16 C 1.40243 * 119.99970 * 137.30929 * 14 13 8 17 17 N 1.30665 * 119.99653 * 332.11189 * 16 14 13 18 18 Si 1.86795 * 120.00072 * 151.83953 * 16 14 13 19 19 H 1.48494 * 109.47370 * 270.27662 * 18 16 14 20 20 H 1.48502 * 109.47006 * 30.27753 * 18 16 14 21 21 H 1.48503 * 109.46964 * 150.27242 * 18 16 14 22 22 H 1.08007 * 119.96289 * 0.04789 * 4 3 2 23 23 H 1.07995 * 119.36713 * 180.02562 * 5 4 3 24 24 H 0.96992 * 120.00408 * 353.44245 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2774 -0.4087 1.1294 5 6 4.6565 -0.4037 1.1189 6 6 5.3678 0.0048 -0.0032 7 9 6.7184 -0.0045 0.0271 8 6 4.7195 0.4137 -1.1472 9 6 5.5142 0.8456 -2.3526 10 9 5.6635 2.2366 -2.3388 11 9 6.7754 0.2410 -2.3208 12 9 4.8415 0.4603 -3.5172 13 6 3.3126 0.4327 -1.1857 14 6 2.6328 0.8535 -2.3448 15 1 2.9764 1.7220 -2.8870 16 6 1.5097 0.1447 -2.7953 17 7 1.3946 -1.1307 -2.5353 18 14 0.1747 1.0254 -3.7604 19 1 -0.8426 1.5623 -2.8214 20 1 0.7765 2.1434 -4.5306 21 1 -0.4709 0.0705 -4.6968 22 1 2.7459 -0.7302 2.0130 23 1 5.1941 -0.7232 1.9994 24 1 2.1269 -1.6080 -2.1151 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575646563.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:11 Heat of formation + Delta-G solvation = -174.144680 kcal Electronic energy + Delta-G solvation = -19425.476360 eV Core-core repulsion = 15609.316975 eV Total energy + Delta-G solvation = -3816.159385 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.99971 -49.92060 -48.45418 -48.35226 -39.79868 -37.02585 -35.92005 -32.91364 -31.43226 -28.05669 -26.35694 -24.24066 -23.04050 -20.60004 -19.77323 -19.34112 -19.20900 -18.06389 -17.46136 -17.14394 -16.56165 -15.94277 -15.58459 -15.30540 -15.15704 -14.88460 -14.83120 -14.64713 -14.57344 -14.54507 -14.53480 -14.03836 -13.63280 -13.27735 -12.99777 -12.86764 -12.46320 -12.37717 -12.07116 -11.54648 -11.04564 -10.13650 -9.56334 -9.39996 -6.90167 -0.13105 0.44194 1.38742 1.47289 1.63235 1.85730 1.96086 2.06201 2.15259 2.55933 3.03409 3.06218 3.24270 3.31731 3.51744 3.67723 4.16010 4.35706 4.56788 5.00451 5.13789 5.18310 5.36413 5.51142 5.71858 5.86999 6.20139 6.40610 6.88062 7.77904 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.021617 B = 0.011095 C = 0.008034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.967386 B = 2523.109870 C = 3484.388872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.298 3.702 3 C -0.174 4.174 4 C 0.035 3.965 5 C -0.265 4.265 6 C 0.202 3.798 7 F -0.138 7.138 8 C -0.349 4.349 9 C 0.524 3.476 10 F -0.191 7.191 11 F -0.186 7.186 12 F -0.175 7.175 13 C 0.159 3.841 14 C -0.508 4.508 15 H 0.093 0.907 16 C 0.027 3.973 17 N -0.768 5.768 18 Si 1.081 2.919 19 H -0.273 1.273 20 H -0.248 1.248 21 H -0.265 1.265 22 H 0.158 0.842 23 H 0.163 0.837 24 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.671 1.426 2.726 6.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.013 4.013 3 C -0.179 4.179 4 C 0.014 3.986 5 C -0.284 4.284 6 C 0.182 3.818 7 F -0.117 7.117 8 C -0.353 4.353 9 C 0.470 3.530 10 F -0.173 7.173 11 F -0.167 7.167 12 F -0.156 7.156 13 C 0.153 3.847 14 C -0.534 4.534 15 H 0.111 0.889 16 C -0.197 4.197 17 N -0.387 5.387 18 Si 0.899 3.101 19 H -0.199 1.199 20 H -0.171 1.171 21 H -0.190 1.190 22 H 0.176 0.824 23 H 0.181 0.819 24 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.521 1.152 1.998 3.416 hybrid contribution 2.393 0.222 0.283 2.420 sum 4.914 1.374 2.280 5.589 Atomic orbital electron populations 1.81013 1.13013 1.12725 1.10174 1.25501 0.92609 0.91708 0.91473 1.17207 0.83821 1.20586 0.96317 1.21016 0.93076 0.89156 0.95375 1.20538 0.93780 1.15384 0.98743 1.17523 0.75955 0.94510 0.93852 1.91484 1.29618 1.93621 1.96965 1.19834 0.94781 1.25891 0.94800 1.17965 0.76762 0.74403 0.83837 1.93138 1.95829 1.31460 1.96856 1.93135 1.43332 1.83452 1.96796 1.93180 1.80128 1.90854 1.51466 1.17945 0.88466 0.86456 0.91821 1.20834 1.11070 1.12818 1.08632 0.88942 1.27923 1.00260 0.94913 0.96616 1.70480 1.34356 1.09111 1.24791 0.83454 0.73810 0.76422 0.76420 1.19874 1.17101 1.18973 0.82410 0.81897 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -23.05 18.54 19.00 0.35 -22.69 14 2 C 0.30 13.27 12.04 88.33 1.06 14.33 14 3 C -0.17 -7.15 5.38 -19.57 -0.11 -7.26 14 4 C 0.03 1.12 9.76 22.50 0.22 1.34 14 5 C -0.26 -8.23 9.95 22.37 0.22 -8.01 14 6 C 0.20 7.45 7.12 22.32 0.16 7.61 14 7 F -0.14 -4.94 15.17 44.97 0.68 -4.26 14 8 C -0.35 -14.65 5.50 -19.38 -0.11 -14.75 14 9 C 0.52 21.74 3.00 71.24 0.21 21.96 14 10 F -0.19 -7.77 17.30 44.97 0.78 -7.00 14 11 F -0.19 -7.29 15.23 44.97 0.68 -6.61 14 12 F -0.18 -7.67 14.75 44.97 0.66 -7.01 14 13 C 0.16 7.10 4.93 -19.87 -0.10 7.01 14 14 C -0.51 -23.80 6.42 23.39 0.15 -23.65 14 15 H 0.09 4.36 7.43 -2.91 -0.02 4.34 14 16 C 0.03 1.24 3.83 85.35 0.33 1.57 14 17 N -0.77 -37.56 12.07 21.88 0.26 -37.30 14 18 Si 1.08 42.60 30.02 68.60 2.06 44.65 14 19 H -0.27 -11.11 7.11 99.48 0.71 -10.40 14 20 H -0.25 -8.81 7.11 99.48 0.71 -8.10 14 21 H -0.27 -10.19 7.11 99.48 0.71 -9.48 14 22 H 0.16 3.96 8.06 -2.91 -0.02 3.94 14 23 H 0.16 3.86 8.06 -2.91 -0.02 3.84 14 24 H 0.29 14.45 7.62 -92.71 -0.71 13.74 14 Total: -1.00 -51.08 243.48 8.87 -42.21 By element: Atomic # 1 Polarization: -3.48 SS G_CDS: 1.35 Total: -2.14 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 2.04 Total: 0.13 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.62 Total: -59.99 kcal Atomic # 9 Polarization: -27.67 SS G_CDS: 2.81 Total: -24.87 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.06 Total: 44.65 kcal Total: -51.08 8.87 -42.21 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646563.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.935 kcal (2) G-P(sol) polarization free energy of solvation -51.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds