Wall clock time and date at job start Mon Mar 30 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40301 * 120.05574 * 206.51621 * 3 2 1 5 5 F 1.35101 * 119.85660 * 359.97438 * 4 3 2 6 6 C 1.38703 * 120.27916 * 179.97438 * 4 3 2 7 7 C 1.37582 * 120.38762 * 359.97438 * 6 4 3 8 8 C 1.40846 * 120.09697 * 359.97438 * 7 6 4 9 9 C 1.41371 * 120.13508 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99858 * 147.39343 * 9 8 7 11 11 C 1.39900 * 120.00100 * 327.39525 * 9 8 7 12 12 N 1.30856 * 119.99812 * 164.36706 * 11 9 8 13 13 Si 1.86798 * 119.99937 * 344.36095 * 11 9 8 14 14 H 1.48498 * 109.47170 * 94.74802 * 13 11 9 15 15 H 1.48501 * 109.47092 * 214.74869 * 13 11 9 16 16 H 1.48499 * 109.47426 * 334.74810 * 13 11 9 17 17 C 1.39020 * 120.05382 * 26.23651 * 3 2 1 18 18 C 1.50705 * 120.19243 * 359.97438 * 17 3 2 19 19 F 1.39901 * 109.46794 * 26.78499 * 18 17 3 20 20 F 1.39891 * 109.47343 * 146.78684 * 18 17 3 21 21 F 1.39902 * 109.46950 * 266.78827 * 18 17 3 22 22 H 1.08002 * 119.80599 * 180.02562 * 6 4 3 23 23 H 1.08001 * 119.95426 * 180.02562 * 7 6 4 24 24 H 0.97010 * 120.00024 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2702 1.0876 0.5422 5 9 2.5924 2.1335 1.0636 6 6 4.6572 1.0928 0.5450 7 6 5.3582 0.0331 0.0174 8 6 4.6696 -1.0669 -0.5301 9 6 5.3892 -2.1564 -1.0720 10 1 4.9857 -3.1561 -1.0065 11 6 6.6239 -1.9397 -1.6931 12 7 7.4282 -2.9468 -1.9192 13 14 7.1242 -0.2128 -2.1997 14 1 7.9505 0.3978 -1.1275 15 1 7.9117 -0.2744 -3.4572 16 1 5.9081 0.6113 -2.4172 17 6 3.2647 -1.0784 -0.5319 18 6 2.5173 -2.2525 -1.1098 19 9 1.2632 -1.8296 -1.5633 20 9 3.2438 -2.7873 -2.1790 21 9 2.3510 -3.2306 -0.1235 22 1 5.1900 1.9333 0.9647 23 1 6.4382 0.0443 0.0236 24 1 8.2842 -2.7967 -2.3502 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575646946.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:33 Heat of formation + Delta-G solvation = -158.582707 kcal Electronic energy + Delta-G solvation = -19284.964594 eV Core-core repulsion = 15469.480026 eV Total energy + Delta-G solvation = -3815.484568 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.05082 -49.68172 -48.61943 -48.43329 -40.05666 -37.66928 -35.63971 -32.98801 -32.55179 -28.12994 -26.25568 -24.74047 -22.73293 -20.86845 -19.49785 -19.32905 -19.26691 -18.47783 -17.26207 -16.97940 -16.84923 -16.52863 -15.63207 -15.41774 -15.20186 -14.97348 -14.95971 -14.76219 -14.70156 -14.61462 -14.43813 -14.11312 -13.84157 -13.57684 -13.42392 -12.83674 -12.54147 -12.42048 -11.97690 -11.67297 -11.12736 -10.11001 -9.66566 -9.00710 -6.71816 -0.37189 0.25174 1.33312 1.46438 1.48060 1.56101 1.81732 1.86530 2.11589 2.42159 2.67894 2.91600 3.03094 3.21467 3.59623 3.62765 4.12283 4.33116 4.50281 4.70957 4.98930 5.07729 5.25488 5.50643 5.76486 6.09451 6.26309 6.29085 6.51656 8.03510 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.020440 B = 0.011339 C = 0.008007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.563613 B = 2468.748611 C = 3496.248054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.264 3.736 3 C 0.020 3.980 4 C 0.020 3.980 5 F -0.145 7.145 6 C -0.068 4.068 7 C -0.169 4.169 8 C 0.101 3.899 9 C -0.438 4.438 10 H 0.074 0.926 11 C 0.052 3.948 12 N -0.812 5.812 13 Si 0.949 3.051 14 H -0.228 1.228 15 H -0.277 1.277 16 H -0.240 1.240 17 C -0.256 4.256 18 C 0.517 3.483 19 F -0.191 7.191 20 F -0.168 7.168 21 F -0.191 7.191 22 H 0.175 0.825 23 H 0.144 0.856 24 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 6.258 1.382 6.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.050 4.050 3 C 0.016 3.984 4 C -0.003 4.003 5 F -0.124 7.124 6 C -0.087 4.087 7 C -0.188 4.188 8 C 0.096 3.904 9 C -0.464 4.464 10 H 0.092 0.908 11 C -0.168 4.168 12 N -0.435 5.435 13 Si 0.768 3.232 14 H -0.152 1.152 15 H -0.203 1.203 16 H -0.163 1.163 17 C -0.261 4.261 18 C 0.463 3.537 19 F -0.173 7.173 20 F -0.150 7.150 21 F -0.172 7.172 22 H 0.192 0.808 23 H 0.162 0.838 24 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.326 6.053 1.287 6.197 hybrid contribution 0.228 -0.256 -0.401 0.527 sum 0.554 5.797 0.887 5.890 Atomic orbital electron populations 1.81065 1.12326 1.08436 1.09323 1.25733 0.92928 0.93164 0.93192 1.15431 0.83293 0.96060 1.03634 1.17069 0.90131 0.85628 1.07465 1.91425 1.80520 1.55302 1.85106 1.21084 0.90338 0.99495 0.97778 1.21381 1.00369 0.94682 1.02376 1.17324 0.89016 0.93314 0.90697 1.19710 1.01599 0.94965 1.30166 0.90815 1.26962 0.93814 1.03424 0.92648 1.69669 1.08914 1.36001 1.28897 0.85737 0.80723 0.77286 0.79404 1.15205 1.20350 1.16276 1.19417 0.94452 0.95438 1.16807 1.18197 0.76107 0.83311 0.76108 1.93117 1.44578 1.89831 1.89754 1.93204 1.77100 1.87410 1.57245 1.93152 1.95585 1.65830 1.62637 0.80780 0.83836 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -18.01 18.30 19.00 0.35 -17.66 14 2 C 0.26 10.60 12.12 88.33 1.07 11.67 14 3 C 0.02 0.78 5.72 -21.34 -0.12 0.66 14 4 C 0.02 0.68 7.30 22.88 0.17 0.84 14 5 F -0.14 -4.81 16.79 44.97 0.76 -4.05 14 6 C -0.07 -2.04 9.99 22.23 0.22 -1.81 14 7 C -0.17 -5.81 7.10 22.75 0.16 -5.64 14 8 C 0.10 4.17 5.03 -21.32 -0.11 4.06 14 9 C -0.44 -20.22 7.66 23.44 0.18 -20.04 14 10 H 0.07 3.82 6.78 -2.91 -0.02 3.80 14 11 C 0.05 2.25 5.42 85.24 0.46 2.71 14 12 N -0.81 -37.19 13.93 21.82 0.30 -36.89 14 13 Si 0.95 32.20 24.52 68.60 1.68 33.88 14 14 H -0.23 -6.59 6.74 99.48 0.67 -5.92 14 15 H -0.28 -9.29 7.11 99.48 0.71 -8.59 14 16 H -0.24 -8.20 6.83 99.48 0.68 -7.52 14 17 C -0.26 -10.63 5.54 -19.12 -0.11 -10.73 14 18 C 0.52 22.06 2.85 71.24 0.20 22.26 14 19 F -0.19 -8.01 14.29 44.97 0.64 -7.37 14 20 F -0.17 -7.53 14.30 44.97 0.64 -6.88 14 21 F -0.19 -8.15 17.30 44.97 0.78 -7.37 14 22 H 0.17 3.66 8.06 -2.91 -0.02 3.64 14 23 H 0.14 4.47 4.89 -2.91 -0.01 4.46 14 24 H 0.30 12.29 8.30 -92.70 -0.77 11.52 14 Total: -1.00 -49.50 236.85 8.51 -40.99 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: 1.23 Total: 1.38 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 2.13 Total: 3.97 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.65 Total: -54.55 kcal Atomic # 9 Polarization: -28.50 SS G_CDS: 2.82 Total: -25.68 kcal Atomic # 14 Polarization: 32.20 SS G_CDS: 1.68 Total: 33.88 kcal Total: -49.50 8.51 -40.99 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646946.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.592 kcal (2) G-P(sol) polarization free energy of solvation -49.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds