Wall clock time and date at job start Mon Mar 30 2020 06:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40089 * 119.99904 * 165.46176 * 3 2 1 5 5 C 1.38120 * 120.39510 * 179.70501 * 4 3 2 6 6 C 1.38143 * 120.38949 * 0.24951 * 5 4 3 7 7 F 1.35097 * 120.01021 * 180.02562 * 6 5 4 8 8 C 1.41071 * 119.97913 * 0.02562 * 6 5 4 9 9 C 1.41341 * 120.19557 * 180.02562 * 8 6 5 10 10 H 1.07998 * 120.00168 * 135.72136 * 9 8 6 11 11 C 1.39920 * 119.99860 * 315.73054 * 9 8 6 12 12 N 1.30854 * 120.00409 * 162.14726 * 11 9 8 13 13 Si 1.86802 * 119.99891 * 342.14426 * 11 9 8 14 14 H 1.48503 * 109.47008 * 95.35830 * 13 11 9 15 15 H 1.48505 * 109.47331 * 215.35153 * 13 11 9 16 16 H 1.48495 * 109.47496 * 335.35583 * 13 11 9 17 17 C 1.39049 * 119.99482 * 345.71878 * 3 2 1 18 18 C 1.50696 * 120.19100 * 0.03895 * 17 3 2 19 19 F 1.39907 * 109.47419 * 272.34828 * 18 17 3 20 20 F 1.39897 * 109.47452 * 32.35153 * 18 17 3 21 21 F 1.39898 * 109.47032 * 152.34944 * 18 17 3 22 22 H 1.08004 * 119.79944 * 359.97438 * 4 3 2 23 23 H 1.08004 * 119.80390 * 180.27511 * 5 4 3 24 24 H 0.96994 * 120.00464 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2679 1.1753 -0.3046 5 6 4.6490 1.1867 -0.3010 6 6 5.3566 0.0385 -0.0021 7 9 6.7074 0.0585 -0.0004 8 6 4.6682 -1.1548 0.3013 9 6 5.3875 -2.3321 0.6083 10 1 5.0825 -2.9499 1.4399 11 6 6.4950 -2.6970 -0.1651 12 7 7.3613 -3.5608 0.2991 13 14 6.7367 -1.9510 -1.8606 14 1 7.6468 -0.7817 -1.7617 15 1 7.3312 -2.9655 -2.7677 16 1 5.4246 -1.5128 -2.4003 17 6 3.2636 -1.1661 0.2971 18 6 2.5150 -2.4337 0.6187 19 9 2.2354 -2.4754 1.9890 20 9 1.3168 -2.4636 -0.1027 21 9 3.2977 -3.5392 0.2687 22 1 2.7242 2.0785 -0.5393 23 1 5.1789 2.0988 -0.5329 24 1 8.1288 -3.8140 -0.2372 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575647599.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:03 Heat of formation + Delta-G solvation = -152.603180 kcal Electronic energy + Delta-G solvation = -19488.615231 eV Core-core repulsion = 15673.389956 eV Total energy + Delta-G solvation = -3815.225276 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.03229 -49.75548 -48.59593 -48.42049 -40.02735 -37.47467 -35.65077 -33.07984 -32.26415 -28.21675 -26.38372 -24.27830 -22.81991 -20.85267 -19.42617 -19.29750 -19.11308 -18.77522 -17.23362 -17.05387 -16.91046 -16.23566 -15.64965 -15.31036 -15.14236 -14.99888 -14.91758 -14.79133 -14.70858 -14.56353 -14.36532 -14.09406 -13.62690 -13.50852 -13.37447 -13.02156 -12.65862 -12.28997 -12.05156 -11.62904 -11.13695 -10.02698 -9.59150 -8.95430 -6.70803 -0.35942 0.27648 1.31223 1.37025 1.43633 1.56530 1.83454 1.86673 2.08138 2.52767 2.76106 2.91966 2.98846 3.23380 3.60790 3.66543 4.19468 4.34748 4.51249 4.80242 5.00848 5.26273 5.26989 5.38187 5.75093 6.08612 6.29561 6.37156 6.55706 8.09670 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.023053 B = 0.011362 C = 0.008787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.280652 B = 2463.834193 C = 3185.735399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.270 3.730 3 C 0.033 3.967 4 C -0.121 4.121 5 C -0.079 4.079 6 C 0.006 3.994 7 F -0.139 7.139 8 C 0.078 3.922 9 C -0.468 4.468 10 H 0.073 0.927 11 C 0.060 3.940 12 N -0.826 5.826 13 Si 0.939 3.061 14 H -0.242 1.242 15 H -0.278 1.278 16 H -0.245 1.245 17 C -0.236 4.236 18 C 0.513 3.487 19 F -0.191 7.191 20 F -0.188 7.188 21 F -0.168 7.168 22 H 0.176 0.824 23 H 0.177 0.823 24 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.077 7.868 -3.555 8.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.044 4.044 3 C 0.029 3.971 4 C -0.143 4.143 5 C -0.098 4.098 6 C -0.015 4.015 7 F -0.118 7.118 8 C 0.074 3.926 9 C -0.496 4.496 10 H 0.091 0.909 11 C -0.158 4.158 12 N -0.450 5.450 13 Si 0.760 3.240 14 H -0.166 1.166 15 H -0.204 1.204 16 H -0.168 1.168 17 C -0.242 4.242 18 C 0.459 3.541 19 F -0.173 7.173 20 F -0.170 7.170 21 F -0.149 7.149 22 H 0.193 0.807 23 H 0.194 0.806 24 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.574 7.621 -3.509 9.120 hybrid contribution 0.867 -0.894 -0.103 1.250 sum -2.706 6.728 -3.612 8.102 Atomic orbital electron populations 1.81129 1.12467 1.08912 1.09147 1.25766 0.92759 0.92591 0.93317 1.15634 0.83339 0.94798 1.03345 1.20878 0.92733 0.96462 1.04182 1.21239 0.94175 0.97096 0.97264 1.18371 0.76927 0.94809 1.11393 1.91273 1.29521 1.96655 1.94353 1.17233 0.90100 0.93412 0.91841 1.19292 1.09266 1.06862 1.14188 0.90890 1.26685 0.92230 0.93886 1.02988 1.69675 1.09230 1.27208 1.38896 0.85986 0.81576 0.79521 0.76872 1.16584 1.20426 1.16779 1.19690 0.93629 0.91676 1.19175 1.18261 0.76358 0.85615 0.73860 1.93152 1.94011 1.96975 1.33142 1.93125 1.48830 1.96717 1.78280 1.93234 1.74063 1.55953 1.91684 0.80664 0.80585 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -16.04 18.43 19.00 0.35 -15.69 14 2 C 0.27 9.30 12.59 88.33 1.11 10.41 14 3 C 0.03 1.10 5.71 -21.39 -0.12 0.98 14 4 C -0.12 -3.19 9.75 22.69 0.22 -2.97 14 5 C -0.08 -2.20 9.98 22.22 0.22 -1.98 14 6 C 0.01 0.22 5.64 22.94 0.13 0.35 14 7 F -0.14 -5.64 12.87 44.97 0.58 -5.07 14 8 C 0.08 3.43 4.66 -21.28 -0.10 3.34 14 9 C -0.47 -23.65 6.98 23.44 0.16 -23.48 14 10 H 0.07 4.08 7.30 -2.91 -0.02 4.05 14 11 C 0.06 2.98 5.01 85.25 0.43 3.41 14 12 N -0.83 -42.48 13.93 21.82 0.30 -42.18 14 13 Si 0.94 38.65 24.63 68.60 1.69 40.34 14 14 H -0.24 -9.39 6.30 99.48 0.63 -8.76 14 15 H -0.28 -11.00 7.11 99.48 0.71 -10.29 14 16 H -0.24 -9.83 7.11 99.48 0.71 -9.13 14 17 C -0.24 -9.62 5.54 -19.13 -0.11 -9.73 14 18 C 0.51 21.73 2.92 71.23 0.21 21.93 14 19 F -0.19 -8.08 17.30 44.97 0.78 -7.30 14 20 F -0.19 -7.59 14.67 44.97 0.66 -6.93 14 21 F -0.17 -7.77 14.18 44.97 0.64 -7.13 14 22 H 0.18 3.09 8.06 -2.91 -0.02 3.07 14 23 H 0.18 3.37 8.06 -2.91 -0.02 3.35 14 24 H 0.30 13.78 8.30 -92.71 -0.77 13.01 14 Total: -1.00 -54.75 237.03 8.36 -46.39 By element: Atomic # 1 Polarization: -5.90 SS G_CDS: 1.20 Total: -4.70 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 2.16 Total: 2.27 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.65 Total: -57.87 kcal Atomic # 9 Polarization: -29.08 SS G_CDS: 2.65 Total: -26.43 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 1.69 Total: 40.34 kcal Total: -54.75 8.36 -46.39 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575647599.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.213 kcal (2) G-P(sol) polarization free energy of solvation -54.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds