Wall clock time and date at job start Mon Mar 30 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40192 * 119.92047 * 222.70138 * 3 2 1 5 5 C 1.36170 * 120.11750 * 180.02562 * 4 3 2 6 6 C 1.41008 * 119.96379 * 0.25048 * 5 4 3 7 7 C 1.41017 * 120.07605 * 179.74494 * 6 5 4 8 8 H 1.07996 * 119.99714 * 149.70973 * 7 6 5 9 9 C 1.40173 * 119.99953 * 329.71090 * 7 6 5 10 10 N 1.30682 * 120.00188 * 348.74926 * 9 7 6 11 11 Si 1.86801 * 120.00056 * 168.74985 * 9 7 6 12 12 H 1.48503 * 109.47277 * 89.99573 * 11 9 7 13 13 H 1.48497 * 109.47461 * 209.99648 * 11 9 7 14 14 H 1.48504 * 109.46987 * 330.00129 * 11 9 7 15 15 C 1.40837 * 119.84479 * 359.49768 * 6 5 4 16 16 C 1.50698 * 120.05900 * 180.27178 * 15 6 5 17 17 F 1.39901 * 109.47224 * 203.43398 * 16 15 6 18 18 F 1.39905 * 109.47257 * 323.43188 * 16 15 6 19 19 F 1.39898 * 109.47135 * 83.43338 * 16 15 6 20 20 C 1.36523 * 119.87748 * 0.48124 * 15 6 5 21 21 F 1.35105 * 119.98047 * 179.76562 * 20 15 6 22 22 H 1.08001 * 119.94202 * 359.97438 * 4 3 2 23 23 H 1.08008 * 120.01534 * 179.97438 * 5 4 3 24 24 H 0.97009 * 120.00280 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2669 0.8939 0.8240 5 6 4.6286 0.8983 0.8268 6 6 5.3374 0.0067 -0.0043 7 6 6.7476 0.0129 -0.0073 8 1 7.2911 -0.8977 -0.2116 9 6 7.4438 1.2009 0.2550 10 7 6.8042 2.3402 0.2843 11 14 9.2857 1.1557 0.5625 12 1 10.0068 1.3097 -0.7265 13 1 9.6625 2.2643 1.4759 14 1 9.6523 -0.1429 1.1826 15 6 4.6338 -0.8937 -0.8276 16 6 5.3866 -1.8529 -1.7132 17 9 4.5689 -2.2430 -2.7793 18 9 6.5340 -1.2259 -2.2107 19 9 5.7556 -2.9804 -0.9718 20 6 3.2686 -0.8930 -0.8250 21 9 2.5915 -1.7526 -1.6175 22 1 2.7243 1.5804 1.4572 23 1 5.1654 1.5875 1.4620 24 1 7.2861 3.1624 0.4654 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575648135.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:36 Heat of formation + Delta-G solvation = -169.178577 kcal Electronic energy + Delta-G solvation = -19163.517104 eV Core-core repulsion = 15347.573065 eV Total energy + Delta-G solvation = -3815.944039 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.96918 -49.97497 -48.40334 -48.31237 -39.80184 -37.43776 -35.75615 -32.96997 -31.52616 -28.43622 -26.43483 -24.04762 -22.83765 -20.20792 -19.91617 -19.25369 -19.16587 -17.93002 -17.46224 -17.15132 -16.68997 -16.50062 -15.33641 -15.20134 -15.16172 -14.83967 -14.62318 -14.57855 -14.55652 -14.50553 -14.30426 -13.82123 -13.74818 -13.41020 -13.00409 -12.89781 -12.57430 -12.40939 -11.98672 -11.61442 -11.22225 -9.96818 -9.54190 -8.96119 -6.78844 0.12394 0.46056 1.42677 1.45881 1.58770 1.73636 2.02608 2.03313 2.16398 2.64163 3.03456 3.17573 3.22051 3.34320 3.50570 3.76751 4.32707 4.60994 4.71395 4.97367 5.13070 5.28932 5.57401 5.66608 5.85544 6.24899 6.45393 6.47663 6.67164 7.97988 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.021457 B = 0.009569 C = 0.007008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.601790 B = 2925.457129 C = 3994.260763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.296 3.704 3 C -0.217 4.217 4 C -0.015 4.015 5 C -0.162 4.162 6 C 0.144 3.856 7 C -0.417 4.417 8 H 0.095 0.905 9 C 0.043 3.957 10 N -0.768 5.768 11 Si 0.984 3.016 12 H -0.263 1.263 13 H -0.256 1.256 14 H -0.254 1.254 15 C -0.358 4.358 16 C 0.526 3.474 17 F -0.190 7.190 18 F -0.172 7.172 19 F -0.189 7.189 20 C 0.222 3.778 21 F -0.143 7.143 22 H 0.144 0.856 23 H 0.139 0.861 24 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.589 -0.323 1.244 5.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.176 5.176 2 C -0.015 4.015 3 C -0.223 4.223 4 C -0.035 4.035 5 C -0.181 4.181 6 C 0.139 3.861 7 C -0.442 4.442 8 H 0.113 0.887 9 C -0.180 4.180 10 N -0.389 5.389 11 Si 0.803 3.197 12 H -0.188 1.188 13 H -0.179 1.179 14 H -0.178 1.178 15 C -0.362 4.362 16 C 0.472 3.528 17 F -0.171 7.171 18 F -0.154 7.154 19 F -0.171 7.171 20 C 0.200 3.800 21 F -0.122 7.122 22 H 0.161 0.839 23 H 0.157 0.843 24 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.837 -0.102 1.215 4.026 hybrid contribution 0.932 -0.348 -0.447 1.091 sum 4.769 -0.451 0.768 4.851 Atomic orbital electron populations 1.81095 1.12648 1.11658 1.12206 1.25584 0.92385 0.91791 0.91695 1.15340 0.83565 1.09994 1.13446 1.20551 0.93983 0.94340 0.94636 1.21040 0.92577 1.02774 1.01731 1.17438 0.93899 0.87952 0.86793 1.20356 0.91277 0.97323 1.35272 0.88696 1.26865 1.06505 0.93681 0.90998 1.69666 1.41554 1.00328 1.27325 0.85113 0.74624 0.80249 0.79669 1.18771 1.17935 1.17790 1.19452 0.91440 1.12798 1.12496 1.17947 0.77355 0.79235 0.78285 1.93135 1.72885 1.92010 1.59086 1.93159 1.51742 1.82181 1.88288 1.93140 1.92213 1.54674 1.77037 1.16856 0.88320 0.86877 0.87930 1.91465 1.80665 1.68062 1.71972 0.83869 0.84326 0.87979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -20.93 18.54 19.00 0.35 -20.58 14 2 C 0.30 11.99 14.95 88.33 1.32 13.31 14 3 C -0.22 -8.69 5.77 -21.04 -0.12 -8.81 14 4 C -0.01 -0.54 9.68 22.26 0.22 -0.32 14 5 C -0.16 -6.50 8.58 22.47 0.19 -6.31 14 6 C 0.14 6.27 5.51 -21.28 -0.12 6.15 14 7 C -0.42 -17.70 7.25 23.42 0.17 -17.54 14 8 H 0.10 4.00 6.58 -2.91 -0.02 3.98 14 9 C 0.04 1.66 5.23 85.33 0.45 2.11 14 10 N -0.77 -30.14 10.95 21.86 0.24 -29.90 14 11 Si 0.98 29.56 29.58 68.60 2.03 31.59 14 12 H -0.26 -7.98 7.11 99.48 0.71 -7.27 14 13 H -0.26 -7.10 7.11 99.48 0.71 -6.39 14 14 H -0.25 -7.67 7.11 99.48 0.71 -6.96 14 15 C -0.36 -15.55 5.47 -19.63 -0.11 -15.66 14 16 C 0.53 21.91 2.89 71.24 0.21 22.11 14 17 F -0.19 -7.77 15.16 44.97 0.68 -7.09 14 18 F -0.17 -7.19 14.53 44.97 0.65 -6.54 14 19 F -0.19 -7.62 17.30 44.97 0.78 -6.84 14 20 C 0.22 9.48 7.08 22.38 0.16 9.64 14 21 F -0.14 -6.11 14.67 44.97 0.66 -5.45 14 22 H 0.14 4.39 8.06 -2.91 -0.02 4.37 14 23 H 0.14 5.46 6.34 -2.91 -0.02 5.44 14 24 H 0.31 10.59 8.29 -92.70 -0.77 9.82 14 Total: -1.00 -46.19 243.73 9.05 -37.14 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: 1.29 Total: 2.99 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 2.36 Total: 4.67 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.59 Total: -50.48 kcal Atomic # 9 Polarization: -28.69 SS G_CDS: 2.77 Total: -25.92 kcal Atomic # 14 Polarization: 29.56 SS G_CDS: 2.03 Total: 31.59 kcal Total: -46.19 9.05 -37.14 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575648135.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.038 kcal (2) G-P(sol) polarization free energy of solvation -46.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds