Wall clock time and date at job start Mon Mar 30 2020 06:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39719 * 120.59011 * 296.98510 * 3 2 1 5 5 F 1.35102 * 120.01267 * 0.02562 * 4 3 2 6 6 C 1.38338 * 119.97370 * 180.29892 * 4 3 2 7 7 C 1.38624 * 121.26164 * 359.68912 * 6 4 3 8 8 C 1.50707 * 119.38162 * 180.02562 * 7 6 4 9 9 F 1.39897 * 109.47078 * 269.97990 * 8 7 6 10 10 F 1.39897 * 109.46969 * 29.97882 * 8 7 6 11 11 F 1.39896 * 109.46872 * 149.97775 * 8 7 6 12 12 C 1.37465 * 121.23516 * 0.02562 * 7 6 4 13 13 C 1.40828 * 119.90796 * 0.02562 * 12 7 6 14 14 C 1.40779 * 120.59706 * 179.97438 * 13 12 7 15 15 H 1.08001 * 119.99556 * 206.20975 * 14 13 12 16 16 C 1.40248 * 120.00508 * 26.21347 * 14 13 12 17 17 N 1.30656 * 120.00119 * 199.08222 * 16 14 13 18 18 Si 1.86796 * 119.99889 * 19.07545 * 16 14 13 19 19 H 1.48503 * 109.47466 * 264.88129 * 18 16 14 20 20 H 1.48498 * 109.47317 * 24.88649 * 18 16 14 21 21 H 1.48502 * 109.47182 * 144.88466 * 18 16 14 22 22 H 1.08008 * 119.36446 * 179.70674 * 6 4 3 23 23 H 1.08001 * 120.04748 * 180.02562 * 12 7 6 24 24 H 0.96998 * 120.00126 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2793 -0.5448 1.0718 5 9 2.6164 -1.0797 2.1205 6 6 4.6626 -0.5319 1.0614 7 6 5.3690 0.0095 -0.0014 8 6 6.8756 0.0008 0.0311 9 9 7.3358 1.1752 0.6362 10 9 7.3198 -1.1058 0.7627 11 9 7.3698 -0.0752 -1.2755 12 6 4.7208 0.5542 -1.0845 13 6 3.3133 0.5687 -1.1261 14 6 2.6346 1.1233 -2.2278 15 1 1.6374 1.5191 -2.1042 16 6 3.2535 1.1618 -3.4858 17 7 2.8158 1.9815 -4.4043 18 14 4.7035 0.0414 -3.8480 19 1 5.9704 0.7751 -3.5989 20 1 4.6403 -1.1511 -2.9653 21 1 4.6527 -0.3906 -5.2679 22 1 5.2025 -0.9519 1.8972 23 1 5.2903 0.9705 -1.9023 24 1 3.2435 2.0078 -5.2745 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575648203.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:50 Heat of formation + Delta-G solvation = -159.851612 kcal Electronic energy + Delta-G solvation = -18812.760601 eV Core-core repulsion = 14997.221009 eV Total energy + Delta-G solvation = -3815.539592 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.80463 -48.37727 -47.31962 -47.26011 -38.19533 -35.48677 -34.40202 -31.52354 -30.54613 -26.35404 -25.79344 -22.19231 -21.69696 -18.70575 -18.20927 -18.09595 -18.09370 -17.13835 -15.91955 -15.54526 -15.13951 -15.03863 -14.30574 -14.06358 -13.90318 -13.72094 -13.47960 -13.44028 -13.17607 -12.84214 -12.69345 -12.57006 -12.16870 -11.95845 -11.75155 -11.36197 -11.31510 -10.83983 -10.49696 -10.23653 -9.74000 -8.36363 -8.18812 -7.66320 -5.23668 1.24652 1.98630 2.75466 2.85700 2.93319 3.06286 3.39804 3.52047 3.59446 4.07628 4.12371 4.44324 4.64576 4.87139 4.93044 5.01381 5.68835 5.74952 5.94943 6.39578 6.44944 6.59547 6.78545 6.93726 7.31595 7.56872 7.79868 7.97544 8.47702 9.29932 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.012382 C = 0.007387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.728462 B = 2260.760036 C = 3789.386765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.293 3.707 3 C -0.188 4.188 4 C 0.202 3.798 5 F -0.143 7.143 6 C -0.264 4.264 7 C -0.085 4.085 8 C 0.503 3.497 9 F -0.179 7.179 10 F -0.180 7.180 11 F -0.181 7.181 12 C -0.193 4.193 13 C 0.129 3.871 14 C -0.377 4.377 15 H 0.107 0.893 16 C 0.077 3.923 17 N -0.747 5.747 18 Si 0.905 3.095 19 H -0.252 1.252 20 H -0.232 1.232 21 H -0.276 1.276 22 H 0.127 0.873 23 H 0.125 0.875 24 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.793 -2.506 2.249 9.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.018 4.018 3 C -0.194 4.194 4 C 0.180 3.820 5 F -0.122 7.122 6 C -0.284 4.284 7 C -0.087 4.087 8 C 0.449 3.551 9 F -0.161 7.161 10 F -0.162 7.162 11 F -0.162 7.162 12 C -0.212 4.212 13 C 0.122 3.878 14 C -0.401 4.401 15 H 0.125 0.875 16 C -0.151 4.151 17 N -0.365 5.365 18 Si 0.728 3.272 19 H -0.177 1.177 20 H -0.154 1.154 21 H -0.203 1.203 22 H 0.145 0.855 23 H 0.143 0.857 24 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.974 -2.363 2.006 7.632 hybrid contribution 1.177 -0.323 -0.152 1.230 sum 8.151 -2.686 1.854 8.781 Atomic orbital electron populations 1.81057 1.12241 1.12306 1.09740 1.25198 0.92179 0.92211 0.92223 1.16685 0.84215 1.17888 1.00656 1.17074 0.89230 0.93113 0.82545 1.91446 1.81235 1.83722 1.55785 1.19582 0.91478 1.15493 1.01851 1.19214 0.88815 1.02919 0.97741 1.18594 0.89778 0.73471 0.73228 1.93192 1.90657 1.48676 1.83561 1.93151 1.91162 1.54055 1.77791 1.93165 1.89626 1.96000 1.37424 1.20809 0.94414 1.07315 0.98674 1.18021 0.89798 0.88970 0.90989 1.19839 1.03242 1.25738 0.91306 0.87479 1.26538 0.98418 0.94517 0.95594 1.69556 1.36020 1.25406 1.05558 0.86385 0.79548 0.82386 0.78850 1.17695 1.15430 1.20254 0.85526 0.85714 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.09 18.54 41.84 0.78 -10.31 14 2 C 0.29 6.59 13.98 -22.47 -0.31 6.28 14 3 C -0.19 -4.02 5.95 -104.09 -0.62 -4.64 14 4 C 0.20 3.99 7.28 -38.99 -0.28 3.70 14 5 F -0.14 -2.75 16.82 2.25 0.04 -2.71 14 6 C -0.26 -4.83 9.31 -39.40 -0.37 -5.19 14 7 C -0.08 -1.58 5.44 -104.76 -0.57 -2.15 14 8 C 0.50 8.52 3.34 36.01 0.12 8.64 14 9 F -0.18 -2.96 17.30 2.25 0.04 -2.92 14 10 F -0.18 -2.87 16.39 2.25 0.04 -2.83 14 11 F -0.18 -3.10 16.40 2.25 0.04 -3.06 14 12 C -0.19 -3.90 6.51 -38.88 -0.25 -4.15 14 13 C 0.13 2.79 5.35 -104.63 -0.56 2.23 14 14 C -0.38 -8.66 9.09 -37.87 -0.34 -9.00 14 15 H 0.11 2.66 7.56 -52.49 -0.40 2.26 14 16 C 0.08 1.69 5.42 -17.30 -0.09 1.59 14 17 N -0.75 -16.56 13.92 55.56 0.77 -15.78 14 18 Si 0.91 17.14 24.46 -169.99 -4.16 12.99 14 19 H -0.25 -4.57 6.66 56.52 0.38 -4.19 14 20 H -0.23 -4.47 6.81 56.52 0.38 -4.08 14 21 H -0.28 -5.02 7.11 56.52 0.40 -4.62 14 22 H 0.13 2.05 7.53 -52.48 -0.40 1.66 14 23 H 0.13 2.46 3.81 -52.49 -0.20 2.26 14 24 H 0.30 5.89 8.29 -40.82 -0.34 5.55 14 LS Contribution 243.27 15.07 3.67 3.67 Total: -1.00 -22.58 243.27 -2.24 -24.82 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: -0.17 Total: -1.16 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -3.29 Total: -2.70 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: 1.55 Total: -26.09 kcal Atomic # 9 Polarization: -11.67 SS G_CDS: 0.15 Total: -11.52 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -4.16 Total: 12.99 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -22.58 -2.24 -24.82 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575648203.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.029 kcal (2) G-P(sol) polarization free energy of solvation -22.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds