Wall clock time and date at job start Mon Mar 30 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39719 * 120.59011 * 296.98510 * 3 2 1 5 5 F 1.35102 * 120.01267 * 0.02562 * 4 3 2 6 6 C 1.38338 * 119.97370 * 180.29892 * 4 3 2 7 7 C 1.38624 * 121.26164 * 359.68912 * 6 4 3 8 8 C 1.50707 * 119.38162 * 180.02562 * 7 6 4 9 9 F 1.39897 * 109.47078 * 269.97990 * 8 7 6 10 10 F 1.39897 * 109.46969 * 29.97882 * 8 7 6 11 11 F 1.39896 * 109.46872 * 149.97775 * 8 7 6 12 12 C 1.37465 * 121.23516 * 0.02562 * 7 6 4 13 13 C 1.40828 * 119.90796 * 0.02562 * 12 7 6 14 14 C 1.40779 * 120.59706 * 179.97438 * 13 12 7 15 15 H 1.08001 * 119.99556 * 206.20975 * 14 13 12 16 16 C 1.40248 * 120.00508 * 26.21347 * 14 13 12 17 17 N 1.30656 * 120.00119 * 199.08222 * 16 14 13 18 18 Si 1.86796 * 119.99889 * 19.07545 * 16 14 13 19 19 H 1.48503 * 109.47466 * 264.88129 * 18 16 14 20 20 H 1.48498 * 109.47317 * 24.88649 * 18 16 14 21 21 H 1.48502 * 109.47182 * 144.88466 * 18 16 14 22 22 H 1.08008 * 119.36446 * 179.70674 * 6 4 3 23 23 H 1.08001 * 120.04748 * 180.02562 * 12 7 6 24 24 H 0.96998 * 120.00126 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2793 -0.5448 1.0718 5 9 2.6164 -1.0797 2.1205 6 6 4.6626 -0.5319 1.0614 7 6 5.3690 0.0095 -0.0014 8 6 6.8756 0.0008 0.0311 9 9 7.3358 1.1752 0.6362 10 9 7.3198 -1.1058 0.7627 11 9 7.3698 -0.0752 -1.2755 12 6 4.7208 0.5542 -1.0845 13 6 3.3133 0.5687 -1.1261 14 6 2.6346 1.1233 -2.2278 15 1 1.6374 1.5191 -2.1042 16 6 3.2535 1.1618 -3.4858 17 7 2.8158 1.9815 -4.4043 18 14 4.7035 0.0414 -3.8480 19 1 5.9704 0.7751 -3.5989 20 1 4.6403 -1.1511 -2.9653 21 1 4.6527 -0.3906 -5.2679 22 1 5.2025 -0.9519 1.8972 23 1 5.2903 0.9705 -1.9023 24 1 3.2435 2.0078 -5.2745 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575648203.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:49 Heat of formation + Delta-G solvation = -170.205150 kcal Electronic energy + Delta-G solvation = -18813.209564 eV Core-core repulsion = 14997.221009 eV Total energy + Delta-G solvation = -3815.988555 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.12753 -49.94628 -48.63699 -48.56936 -39.82197 -37.27827 -36.03325 -33.14916 -32.16152 -27.97486 -27.30630 -23.75167 -23.28374 -20.27205 -19.82732 -19.46782 -19.43855 -18.66004 -17.52247 -17.11812 -16.70024 -16.60192 -15.78323 -15.38233 -15.35330 -15.03167 -14.86151 -14.74378 -14.73049 -14.56507 -14.29362 -14.18720 -13.84962 -13.53833 -13.39761 -12.96538 -12.92228 -12.41730 -12.09690 -11.78194 -11.27779 -10.01612 -9.78659 -9.28795 -6.94599 -0.38646 0.39275 1.23502 1.35274 1.44989 1.67230 1.77908 1.80360 1.99479 2.37211 2.68345 2.98972 3.08315 3.23217 3.40165 3.49620 4.12629 4.19800 4.35643 4.78458 4.84727 5.00520 5.21425 5.30020 5.70889 5.82557 6.13654 6.27146 6.69375 7.74435 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.012382 C = 0.007387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.728462 B = 2260.760036 C = 3789.386765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.297 3.703 3 C -0.205 4.205 4 C 0.203 3.797 5 F -0.139 7.139 6 C -0.241 4.241 7 C -0.083 4.083 8 C 0.513 3.487 9 F -0.174 7.174 10 F -0.170 7.170 11 F -0.179 7.179 12 C -0.199 4.199 13 C 0.129 3.871 14 C -0.410 4.410 15 H 0.072 0.928 16 C 0.054 3.946 17 N -0.781 5.781 18 Si 0.942 3.058 19 H -0.235 1.235 20 H -0.236 1.236 21 H -0.263 1.263 22 H 0.157 0.843 23 H 0.132 0.868 24 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.127 -3.442 2.988 12.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.013 4.013 3 C -0.212 4.212 4 C 0.181 3.819 5 F -0.117 7.117 6 C -0.261 4.261 7 C -0.085 4.085 8 C 0.459 3.541 9 F -0.155 7.155 10 F -0.151 7.151 11 F -0.161 7.161 12 C -0.218 4.218 13 C 0.123 3.877 14 C -0.435 4.435 15 H 0.091 0.909 16 C -0.171 4.171 17 N -0.401 5.401 18 Si 0.761 3.239 19 H -0.159 1.159 20 H -0.159 1.159 21 H -0.189 1.189 22 H 0.175 0.825 23 H 0.149 0.851 24 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.305 -3.292 2.752 10.247 hybrid contribution 0.461 -0.055 -0.242 0.523 sum 9.766 -3.346 2.510 10.624 Atomic orbital electron populations 1.81034 1.12921 1.13296 1.10551 1.25501 0.92579 0.91648 0.91608 1.16887 0.83709 1.18929 1.01631 1.17108 0.89731 0.92907 0.82171 1.91462 1.81318 1.83537 1.55397 1.19923 0.90808 1.13237 1.02132 1.19429 0.90313 1.01736 0.97048 1.18214 0.88500 0.73913 0.73481 1.93213 1.90429 1.48456 1.83448 1.93181 1.90906 1.53532 1.77502 1.93175 1.89445 1.96016 1.37436 1.20864 0.93610 1.07682 0.99594 1.18081 0.90684 0.88406 0.90494 1.19721 1.02424 1.28358 0.92976 0.90941 1.27095 1.00080 0.95081 0.94827 1.69551 1.37526 1.26596 1.06443 0.85850 0.77818 0.80873 0.79357 1.15879 1.15855 1.18872 0.82528 0.85092 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.71 18.54 19.01 0.35 -23.36 14 2 C 0.30 13.53 13.98 88.33 1.23 14.76 14 3 C -0.20 -8.67 5.95 -19.52 -0.12 -8.78 14 4 C 0.20 7.54 7.28 22.65 0.16 7.70 14 5 F -0.14 -5.00 16.82 44.97 0.76 -4.25 14 6 C -0.24 -7.93 9.31 22.39 0.21 -7.72 14 7 C -0.08 -2.83 5.44 -19.95 -0.11 -2.94 14 8 C 0.51 15.34 3.34 71.24 0.24 15.58 14 9 F -0.17 -5.08 17.30 44.97 0.78 -4.30 14 10 F -0.17 -4.66 16.39 44.97 0.74 -3.92 14 11 F -0.18 -5.46 16.40 44.97 0.74 -4.72 14 12 C -0.20 -7.61 6.51 22.72 0.15 -7.47 14 13 C 0.13 5.58 5.35 -19.87 -0.11 5.48 14 14 C -0.41 -19.35 9.09 23.38 0.21 -19.14 14 15 H 0.07 3.83 7.56 -2.91 -0.02 3.81 14 16 C 0.05 2.38 5.42 85.36 0.46 2.84 14 17 N -0.78 -35.20 13.92 21.88 0.30 -34.89 14 18 Si 0.94 33.66 24.46 68.60 1.68 35.34 14 19 H -0.23 -7.70 6.66 99.48 0.66 -7.04 14 20 H -0.24 -8.52 6.81 99.48 0.68 -7.85 14 21 H -0.26 -8.82 7.11 99.48 0.71 -8.11 14 22 H 0.16 4.28 7.53 -2.91 -0.02 4.25 14 23 H 0.13 4.85 3.81 -2.91 -0.01 4.84 14 24 H 0.31 12.27 8.29 -92.71 -0.77 11.50 14 Total: -1.00 -47.30 243.27 8.90 -38.39 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: 1.22 Total: 1.40 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 2.34 Total: 0.31 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.66 Total: -58.25 kcal Atomic # 9 Polarization: -20.20 SS G_CDS: 3.01 Total: -17.19 kcal Atomic # 14 Polarization: 33.66 SS G_CDS: 1.68 Total: 35.34 kcal Total: -47.30 8.90 -38.39 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575648203.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.815 kcal (2) G-P(sol) polarization free energy of solvation -47.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds