Wall clock time and date at job start Mon Mar 30 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39956 * 120.01865 * 313.27603 * 3 2 1 5 5 C 1.38552 * 120.32382 * 179.97438 * 4 3 2 6 6 F 1.35102 * 119.82026 * 180.02562 * 5 4 3 7 7 C 1.37976 * 120.36151 * 359.97438 * 5 4 3 8 8 C 1.50704 * 119.98303 * 180.02562 * 7 5 4 9 9 F 1.39895 * 109.47126 * 263.59337 * 8 7 5 10 10 F 1.39904 * 109.47131 * 23.59543 * 8 7 5 11 11 F 1.39904 * 109.46734 * 143.59422 * 8 7 5 12 12 C 1.40718 * 120.03143 * 0.04685 * 7 5 4 13 13 C 1.41442 * 120.16002 * 179.97438 * 12 7 5 14 14 H 1.08002 * 120.00036 * 328.84853 * 13 12 7 15 15 C 1.39927 * 119.99924 * 148.85274 * 13 12 7 16 16 N 1.30832 * 119.99634 * 336.26031 * 15 13 12 17 17 Si 1.86796 * 120.00022 * 156.26637 * 15 13 12 18 18 H 1.48495 * 109.47052 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.47092 * 299.99807 * 17 15 13 20 20 H 1.48504 * 109.47086 * 59.99911 * 17 15 13 21 21 C 1.39053 * 120.02033 * 133.55463 * 3 2 1 22 22 H 1.07998 * 119.84030 * 359.97438 * 4 3 2 23 23 H 0.97000 * 120.00671 * 354.28843 * 16 15 13 24 24 H 1.07995 * 120.17718 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 -0.8298 0.8823 5 6 4.6540 -0.8346 0.8873 6 9 5.3199 -1.6406 1.7429 7 6 5.3574 -0.0215 0.0225 8 6 6.8643 -0.0340 0.0348 9 9 7.3329 1.0176 0.8295 10 9 7.3163 -1.2506 0.5572 11 9 7.3425 0.1193 -1.2710 12 6 4.6683 0.8197 -0.8706 13 6 5.3866 1.6548 -1.7579 14 1 6.3506 2.0470 -1.4693 15 6 4.8483 1.9727 -3.0098 16 7 3.9611 1.1839 -3.5597 17 14 5.3964 3.5232 -3.8956 18 1 4.6829 3.6302 -5.1936 19 1 5.0824 4.7088 -3.0585 20 1 6.8600 3.4629 -4.1394 21 6 3.2633 0.8306 -0.8726 22 1 2.7265 -1.4700 1.5626 23 1 3.7376 0.3383 -3.1403 24 1 2.7262 1.4763 -1.5514 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575648224.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:39 Heat of formation + Delta-G solvation = -164.607787 kcal Electronic energy + Delta-G solvation = -19130.493334 eV Core-core repulsion = 15314.747499 eV Total energy + Delta-G solvation = -3815.745835 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.31943 -48.27730 -46.77482 -46.66472 -38.47140 -36.07901 -34.31301 -31.42783 -29.65862 -26.39401 -25.20147 -22.10419 -21.78874 -19.30741 -17.68094 -17.67835 -17.56766 -16.91903 -15.69352 -15.38278 -14.96555 -14.38359 -13.95522 -13.71742 -13.56675 -13.43781 -13.33140 -13.22610 -13.08964 -12.99560 -12.87361 -12.53632 -12.14908 -11.89709 -11.45605 -11.13006 -10.99283 -10.71915 -10.57544 -10.02898 -9.49849 -8.46945 -8.12206 -7.75113 -5.12884 1.29608 2.07507 2.91433 2.97127 3.07334 3.16708 3.35938 3.63986 3.69503 4.11169 4.33357 4.65498 4.75014 4.95723 5.14671 5.37985 5.74767 5.93408 6.17406 6.53642 6.60755 6.90016 6.94173 7.15707 7.41149 7.49498 7.87150 7.89092 8.14484 9.50595 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.014711 B = 0.012226 C = 0.007155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.878508 B = 2289.708953 C = 3912.322208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.274 3.726 3 C 0.037 3.963 4 C -0.257 4.257 5 C 0.192 3.808 6 F -0.142 7.142 7 C -0.335 4.335 8 C 0.524 3.476 9 F -0.193 7.193 10 F -0.191 7.191 11 F -0.171 7.171 12 C 0.129 3.871 13 C -0.467 4.467 14 H 0.097 0.903 15 C 0.037 3.963 16 N -0.761 5.761 17 Si 1.068 2.932 18 H -0.269 1.269 19 H -0.268 1.268 20 H -0.268 1.268 21 C -0.145 4.145 22 H 0.123 0.877 23 H 0.303 0.697 24 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.966 0.584 1.911 4.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.041 4.041 3 C 0.033 3.967 4 C -0.279 4.279 5 C 0.173 3.827 6 F -0.120 7.120 7 C -0.339 4.339 8 C 0.470 3.530 9 F -0.174 7.174 10 F -0.172 7.172 11 F -0.152 7.152 12 C 0.124 3.876 13 C -0.492 4.492 14 H 0.115 0.885 15 C -0.189 4.189 16 N -0.382 5.382 17 Si 0.889 3.111 18 H -0.193 1.193 19 H -0.193 1.193 20 H -0.193 1.193 21 C -0.167 4.167 22 H 0.141 0.859 23 H 0.117 0.883 24 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.962 1.410 0.549 2.478 hybrid contribution 1.025 -1.217 1.629 2.277 sum 2.987 0.193 2.178 3.702 Atomic orbital electron populations 1.81131 1.12264 1.09289 1.09355 1.25942 0.92879 0.92676 0.92593 1.15526 0.83199 0.99154 0.98778 1.20001 0.91088 1.09290 1.07520 1.16776 0.89591 0.88719 0.87645 1.91467 1.80902 1.71309 1.68370 1.19697 0.89991 1.11150 1.13104 1.18009 0.88983 0.72629 0.73387 1.93138 1.90629 1.58771 1.74878 1.93131 1.91183 1.45833 1.87078 1.93175 1.89854 1.95227 1.36940 1.16873 0.90929 0.89008 0.90769 1.21020 1.06022 1.21931 1.00264 0.88474 1.27342 0.92307 1.03489 0.95712 1.70506 1.20528 1.09086 1.38031 0.83569 0.77616 0.73159 0.76786 1.19287 1.19292 1.19323 1.21355 0.93637 1.00900 1.00825 0.85931 0.88296 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.78 18.54 41.84 0.78 -8.01 14 2 C 0.27 5.21 15.32 -22.48 -0.34 4.86 14 3 C 0.04 0.73 5.72 -107.03 -0.61 0.11 14 4 C -0.26 -4.87 9.73 -38.82 -0.38 -5.24 14 5 C 0.19 3.91 7.13 -39.56 -0.28 3.63 14 6 F -0.14 -2.81 15.17 2.25 0.03 -2.77 14 7 C -0.34 -7.23 5.51 -103.78 -0.57 -7.80 14 8 C 0.52 10.98 2.90 36.01 0.10 11.08 14 9 F -0.19 -3.95 17.30 2.25 0.04 -3.91 14 10 F -0.19 -3.87 15.19 2.25 0.03 -3.84 14 11 F -0.17 -3.65 14.54 2.25 0.03 -3.62 14 12 C 0.13 2.83 5.14 -106.89 -0.55 2.28 14 13 C -0.47 -10.34 7.12 -37.73 -0.27 -10.61 14 14 H 0.10 2.15 6.72 -52.49 -0.35 1.79 14 15 C 0.04 0.79 4.93 -17.34 -0.09 0.70 14 16 N -0.76 -17.08 12.52 55.55 0.70 -16.39 14 17 Si 1.07 18.37 29.99 -169.99 -5.10 13.27 14 18 H -0.27 -4.65 7.11 56.52 0.40 -4.25 14 19 H -0.27 -4.43 7.11 56.52 0.40 -4.03 14 20 H -0.27 -4.46 7.11 56.52 0.40 -4.05 14 21 C -0.15 -3.01 7.69 -38.42 -0.30 -3.31 14 22 H 0.12 2.06 8.06 -52.49 -0.42 1.64 14 23 H 0.30 6.92 6.83 -40.82 -0.28 6.64 14 24 H 0.13 2.67 6.89 -52.49 -0.36 2.31 14 LS Contribution 244.25 15.07 3.68 3.68 Total: -1.00 -22.52 244.25 -3.30 -25.83 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: -0.21 Total: 0.05 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -3.28 Total: -4.29 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 1.47 Total: -24.40 kcal Atomic # 9 Polarization: -14.28 SS G_CDS: 0.14 Total: -14.14 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.10 Total: 13.27 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -22.52 -3.30 -25.83 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575648224.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.782 kcal (2) G-P(sol) polarization free energy of solvation -22.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds