Wall clock time and date at job start Mon Mar 30 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39956 * 120.01865 * 313.27603 * 3 2 1 5 5 C 1.38552 * 120.32382 * 179.97438 * 4 3 2 6 6 F 1.35102 * 119.82026 * 180.02562 * 5 4 3 7 7 C 1.37976 * 120.36151 * 359.97438 * 5 4 3 8 8 C 1.50704 * 119.98303 * 180.02562 * 7 5 4 9 9 F 1.39895 * 109.47126 * 263.59337 * 8 7 5 10 10 F 1.39904 * 109.47131 * 23.59543 * 8 7 5 11 11 F 1.39904 * 109.46734 * 143.59422 * 8 7 5 12 12 C 1.40718 * 120.03143 * 0.04685 * 7 5 4 13 13 C 1.41442 * 120.16002 * 179.97438 * 12 7 5 14 14 H 1.08002 * 120.00036 * 328.84853 * 13 12 7 15 15 C 1.39927 * 119.99924 * 148.85274 * 13 12 7 16 16 N 1.30832 * 119.99634 * 336.26031 * 15 13 12 17 17 Si 1.86796 * 120.00022 * 156.26637 * 15 13 12 18 18 H 1.48495 * 109.47052 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.47092 * 299.99807 * 17 15 13 20 20 H 1.48504 * 109.47086 * 59.99911 * 17 15 13 21 21 C 1.39053 * 120.02033 * 133.55463 * 3 2 1 22 22 H 1.07998 * 119.84030 * 359.97438 * 4 3 2 23 23 H 0.97000 * 120.00671 * 354.28843 * 16 15 13 24 24 H 1.07995 * 120.17718 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 -0.8298 0.8823 5 6 4.6540 -0.8346 0.8873 6 9 5.3199 -1.6406 1.7429 7 6 5.3574 -0.0215 0.0225 8 6 6.8643 -0.0340 0.0348 9 9 7.3329 1.0176 0.8295 10 9 7.3163 -1.2506 0.5572 11 9 7.3425 0.1193 -1.2710 12 6 4.6683 0.8197 -0.8706 13 6 5.3866 1.6548 -1.7579 14 1 6.3506 2.0470 -1.4693 15 6 4.8483 1.9727 -3.0098 16 7 3.9611 1.1839 -3.5597 17 14 5.3964 3.5232 -3.8956 18 1 4.6829 3.6302 -5.1936 19 1 5.0824 4.7088 -3.0585 20 1 6.8600 3.4629 -4.1394 21 6 3.2633 0.8306 -0.8726 22 1 2.7265 -1.4700 1.5626 23 1 3.7376 0.3383 -3.1403 24 1 2.7262 1.4763 -1.5514 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575648224.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:39 Heat of formation + Delta-G solvation = -173.225913 kcal Electronic energy + Delta-G solvation = -19130.867044 eV Core-core repulsion = 15314.747499 eV Total energy + Delta-G solvation = -3816.119545 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.98378 -49.88326 -48.42937 -48.34652 -40.10264 -37.66865 -35.93069 -33.06586 -31.29062 -28.03902 -26.85110 -23.73607 -23.42666 -20.91858 -19.34384 -19.33578 -19.23057 -18.54276 -17.31507 -16.99569 -16.57034 -15.82416 -15.59755 -15.33275 -15.22349 -15.06163 -14.90715 -14.88240 -14.72010 -14.60724 -14.52832 -14.16492 -13.75783 -13.50305 -12.96965 -12.71337 -12.52176 -12.32058 -11.94421 -11.59531 -11.05617 -10.11041 -9.75155 -9.41335 -6.81385 -0.33759 0.45567 1.46808 1.51568 1.57164 1.83555 1.85476 1.97123 2.28406 2.53637 2.72693 3.01722 3.08739 3.31015 3.51128 3.71033 4.19976 4.29271 4.54443 4.89416 4.98824 5.24657 5.32360 5.49942 5.74537 5.83830 6.21521 6.32333 6.50418 7.83507 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.014711 B = 0.012226 C = 0.007155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.878508 B = 2289.708953 C = 3912.322208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.286 3.714 3 C 0.046 3.954 4 C -0.238 4.238 5 C 0.185 3.815 6 F -0.138 7.138 7 C -0.348 4.348 8 C 0.524 3.476 9 F -0.191 7.191 10 F -0.187 7.187 11 F -0.175 7.175 12 C 0.117 3.883 13 C -0.490 4.490 14 H 0.092 0.908 15 C 0.014 3.986 16 N -0.782 5.782 17 Si 1.108 2.892 18 H -0.270 1.270 19 H -0.256 1.256 20 H -0.259 1.259 21 C -0.151 4.151 22 H 0.151 0.849 23 H 0.292 0.708 24 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.763 0.680 2.369 4.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.029 4.029 3 C 0.043 3.957 4 C -0.260 4.260 5 C 0.165 3.835 6 F -0.116 7.116 7 C -0.353 4.353 8 C 0.470 3.530 9 F -0.172 7.172 10 F -0.168 7.168 11 F -0.156 7.156 12 C 0.113 3.887 13 C -0.516 4.516 14 H 0.110 0.890 15 C -0.207 4.207 16 N -0.403 5.403 17 Si 0.925 3.075 18 H -0.195 1.195 19 H -0.180 1.180 20 H -0.183 1.183 21 C -0.173 4.173 22 H 0.168 0.832 23 H 0.105 0.895 24 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.759 1.492 1.028 2.525 hybrid contribution 1.063 -1.339 1.597 2.340 sum 2.823 0.153 2.625 3.858 Atomic orbital electron populations 1.81154 1.12441 1.09500 1.09574 1.25708 0.92509 0.92387 0.92294 1.15483 0.83315 0.98669 0.98282 1.20282 0.90637 1.08325 1.06782 1.16853 0.90095 0.88792 0.87726 1.91477 1.80920 1.71091 1.68146 1.19898 0.90401 1.11485 1.13484 1.17978 0.88909 0.72793 0.73270 1.93137 1.90591 1.58708 1.74769 1.93134 1.91133 1.45580 1.86989 1.93164 1.89889 1.95268 1.37319 1.17070 0.91557 0.89116 0.90987 1.21095 1.06280 1.23207 1.01009 0.88993 1.28405 0.91483 1.04927 0.95911 1.70600 1.22104 1.09164 1.38395 0.83081 0.77738 0.70797 0.75913 1.19467 1.18031 1.18296 1.21294 0.93320 1.01456 1.01252 0.83176 0.89477 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -16.92 18.54 19.00 0.35 -16.57 14 2 C 0.29 10.29 15.32 88.33 1.35 11.65 14 3 C 0.05 1.72 5.72 -21.42 -0.12 1.59 14 4 C -0.24 -8.42 9.73 22.76 0.22 -8.20 14 5 C 0.18 7.19 7.13 22.28 0.16 7.34 14 6 F -0.14 -5.17 15.17 44.97 0.68 -4.49 14 7 C -0.35 -14.73 5.51 -19.32 -0.11 -14.84 14 8 C 0.52 21.61 2.90 71.24 0.21 21.81 14 9 F -0.19 -7.66 17.30 44.97 0.78 -6.88 14 10 F -0.19 -7.38 15.19 44.97 0.68 -6.70 14 11 F -0.18 -7.45 14.54 44.97 0.65 -6.80 14 12 C 0.12 5.11 5.14 -21.33 -0.11 5.00 14 13 C -0.49 -21.69 7.12 23.47 0.17 -21.52 14 14 H 0.09 4.07 6.72 -2.91 -0.02 4.05 14 15 C 0.01 0.58 4.93 85.25 0.42 1.00 14 16 N -0.78 -35.23 12.52 21.82 0.27 -34.95 14 17 Si 1.11 36.27 29.99 68.60 2.06 38.33 14 18 H -0.27 -8.85 7.11 99.48 0.71 -8.15 14 19 H -0.26 -7.84 7.11 99.48 0.71 -7.13 14 20 H -0.26 -8.00 7.11 99.48 0.71 -7.30 14 21 C -0.15 -6.18 7.69 23.02 0.18 -6.01 14 22 H 0.15 4.49 8.06 -2.91 -0.02 4.47 14 23 H 0.29 13.51 6.83 -92.71 -0.63 12.88 14 24 H 0.12 5.09 6.89 -2.91 -0.02 5.07 14 Total: -1.00 -45.62 244.25 9.27 -36.35 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: 1.42 Total: 3.89 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 2.37 Total: -2.17 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.63 Total: -51.52 kcal Atomic # 9 Polarization: -27.66 SS G_CDS: 2.80 Total: -24.87 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.06 Total: 38.33 kcal Total: -45.62 9.27 -36.35 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575648224.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.881 kcal (2) G-P(sol) polarization free energy of solvation -45.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds