Wall clock time and date at job start Mon Mar 30 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39078 * 119.99336 * 214.07461 * 3 2 1 5 5 C 1.40417 * 119.61917 * 179.74640 * 4 3 2 6 6 C 1.41348 * 120.19955 * 180.28138 * 5 4 3 7 7 H 1.08004 * 120.00234 * 204.77211 * 6 5 4 8 8 C 1.39915 * 119.99927 * 24.77216 * 6 5 4 9 9 N 1.30858 * 120.00056 * 17.64161 * 8 6 5 10 10 Si 1.86800 * 119.99918 * 197.64651 * 8 6 5 11 11 H 1.48503 * 109.47050 * 59.99946 * 10 8 6 12 12 H 1.48507 * 109.47073 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47303 * 300.00004 * 10 8 6 14 14 C 1.41105 * 119.60847 * 0.55380 * 5 4 3 15 15 F 1.35097 * 120.01024 * 179.72194 * 14 5 4 16 16 C 1.38097 * 119.98031 * 359.44378 * 14 5 4 17 17 C 1.38157 * 120.38860 * 0.28135 * 16 14 5 18 18 C 1.50706 * 119.80221 * 180.02562 * 17 16 14 19 19 F 1.39897 * 109.47310 * 359.97438 * 18 17 16 20 20 F 1.39899 * 109.47030 * 120.00158 * 18 17 16 21 21 F 1.39900 * 109.46930 * 239.99876 * 18 17 16 22 22 H 1.08003 * 120.19247 * 0.02562 * 4 3 2 23 23 H 0.97001 * 120.00042 * 179.97438 * 9 8 6 24 24 H 1.08004 * 119.80512 * 180.25216 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2629 0.9987 0.6749 5 6 4.6670 0.9887 0.6742 6 6 5.3855 1.9936 1.3611 7 1 6.3928 2.2396 1.0588 8 6 4.7918 2.6697 2.4325 9 7 3.7385 2.1644 3.0221 10 14 5.5026 4.2938 3.0213 11 1 5.4689 5.2801 1.9116 12 1 4.6970 4.8029 4.1602 13 1 6.9067 4.0897 3.4596 14 6 5.3566 -0.0273 -0.0210 15 9 6.7075 -0.0415 -0.0317 16 6 4.6503 -1.0103 -0.6857 17 6 3.2688 -1.0033 -0.6800 18 6 2.5112 -2.0829 -1.4093 19 9 3.4170 -2.9655 -2.0073 20 9 1.7074 -2.7822 -0.5027 21 9 1.7060 -1.5027 -2.3953 22 1 2.7255 1.7744 1.2002 23 1 3.3271 2.6330 3.7652 24 1 5.1810 -1.7889 -1.2136 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575648250.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:05 Heat of formation + Delta-G solvation = -171.195661 kcal Electronic energy + Delta-G solvation = -18741.264919 eV Core-core repulsion = 14925.233413 eV Total energy + Delta-G solvation = -3816.031506 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.07144 -49.31029 -48.58700 -48.54503 -39.89608 -37.47316 -36.03284 -32.64141 -31.70727 -28.83047 -25.89346 -24.30358 -23.04697 -20.48761 -19.40990 -19.40555 -19.31182 -18.46780 -17.40625 -16.85881 -16.17448 -16.05830 -15.54703 -15.52666 -15.23429 -15.02627 -14.78954 -14.76844 -14.72126 -14.60435 -14.42488 -14.07713 -13.66672 -13.36214 -13.21417 -12.80305 -12.70321 -12.33831 -12.16118 -11.72658 -11.26301 -9.95211 -9.58965 -8.96092 -6.68402 -0.15372 0.48393 1.39553 1.44875 1.55170 1.55873 1.81494 1.91588 2.13932 2.48948 2.82220 3.02084 3.15683 3.17498 3.59945 3.90480 4.11640 4.66077 4.74165 4.97223 5.02000 5.08558 5.41265 5.63328 5.76831 6.17761 6.39319 6.46303 6.49424 7.98081 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.027193 B = 0.007361 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.428433 B = 3802.932922 C = 4589.737829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.271 3.729 3 C 0.020 3.980 4 C -0.100 4.100 5 C 0.074 3.926 6 C -0.436 4.436 7 H 0.100 0.900 8 C 0.039 3.961 9 N -0.787 5.787 10 Si 0.990 3.010 11 H -0.254 1.254 12 H -0.265 1.265 13 H -0.255 1.255 14 C -0.029 4.029 15 F -0.151 7.151 16 C -0.052 4.052 17 C -0.274 4.274 18 C 0.521 3.479 19 F -0.175 7.175 20 F -0.190 7.190 21 F -0.188 7.188 22 H 0.135 0.865 23 H 0.305 0.695 24 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.637 -0.460 -2.224 3.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.043 4.043 3 C 0.016 3.984 4 C -0.122 4.122 5 C 0.070 3.930 6 C -0.462 4.462 7 H 0.118 0.882 8 C -0.183 4.183 9 N -0.409 5.409 10 Si 0.809 3.191 11 H -0.178 1.178 12 H -0.189 1.189 13 H -0.179 1.179 14 C -0.049 4.049 15 F -0.130 7.130 16 C -0.071 4.071 17 C -0.279 4.279 18 C 0.467 3.533 19 F -0.156 7.156 20 F -0.171 7.171 21 F -0.170 7.170 22 H 0.153 0.847 23 H 0.117 0.883 24 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.721 -0.477 -2.032 2.209 hybrid contribution 0.601 0.234 0.238 0.687 sum 1.322 -0.243 -1.795 2.242 Atomic orbital electron populations 1.81066 1.12441 1.09083 1.09940 1.26019 0.93054 0.92698 0.92543 1.15462 0.82991 0.98021 1.01947 1.21179 0.93281 0.98033 0.99693 1.17844 0.92155 0.91502 0.91538 1.20104 1.01979 1.13564 1.10570 0.88250 1.26936 0.94250 1.02146 0.94920 1.69761 1.17178 1.37500 1.16448 0.85078 0.79522 0.75759 0.78723 1.17820 1.18922 1.17941 1.17704 0.76545 0.99735 1.10948 1.91323 1.29335 1.96532 1.95835 1.20287 0.91695 0.97757 0.97370 1.18722 0.93568 1.01045 1.14607 1.18096 0.77045 0.81272 0.76845 1.93111 1.67024 1.70872 1.84582 1.93168 1.75372 1.80940 1.67667 1.93166 1.75250 1.84449 1.64095 0.84701 0.88349 0.83128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -19.22 18.54 19.01 0.35 -18.87 14 2 C 0.27 11.37 13.12 88.33 1.16 12.53 14 3 C 0.02 0.83 5.70 -21.39 -0.12 0.71 14 4 C -0.10 -4.37 8.39 23.00 0.19 -4.17 14 5 C 0.07 3.31 5.57 -21.28 -0.12 3.19 14 6 C -0.44 -19.21 8.78 23.44 0.21 -19.00 14 7 H 0.10 4.22 7.73 -2.91 -0.02 4.20 14 8 C 0.04 1.58 5.14 85.24 0.44 2.01 14 9 N -0.79 -33.58 10.96 21.82 0.24 -33.34 14 10 Si 0.99 30.83 29.59 68.60 2.03 32.86 14 11 H -0.25 -7.79 7.11 99.48 0.71 -7.08 14 12 H -0.27 -7.88 7.11 99.48 0.71 -7.17 14 13 H -0.26 -7.81 7.11 99.48 0.71 -7.10 14 14 C -0.03 -1.20 7.31 22.94 0.17 -1.04 14 15 F -0.15 -6.29 16.70 44.97 0.75 -5.54 14 16 C -0.05 -1.97 9.37 22.22 0.21 -1.76 14 17 C -0.27 -10.74 5.42 -19.44 -0.11 -10.84 14 18 C 0.52 19.00 2.88 71.24 0.21 19.21 14 19 F -0.17 -5.74 15.94 44.97 0.72 -5.03 14 20 F -0.19 -7.17 16.50 44.97 0.74 -6.43 14 21 F -0.19 -6.96 16.50 44.97 0.74 -6.22 14 22 H 0.14 6.07 6.17 -2.91 -0.02 6.05 14 23 H 0.30 11.65 8.30 -92.71 -0.77 10.88 14 24 H 0.15 4.89 7.12 -2.91 -0.02 4.87 14 Total: -1.00 -46.19 247.07 9.10 -37.09 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: 1.29 Total: 4.63 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 2.23 Total: 0.84 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.59 Total: -52.21 kcal Atomic # 9 Polarization: -26.16 SS G_CDS: 2.95 Total: -23.21 kcal Atomic # 14 Polarization: 30.83 SS G_CDS: 2.03 Total: 32.86 kcal Total: -46.19 9.10 -37.09 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575648250.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.106 kcal (2) G-P(sol) polarization free energy of solvation -46.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds