Wall clock time and date at job start Mon Mar 30 2020 06:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40190 * 119.92651 * 17.25387 * 3 2 1 5 5 C 1.36163 * 120.12207 * 179.97438 * 4 3 2 6 6 C 1.50703 * 120.02073 * 180.02562 * 5 4 3 7 7 F 1.39910 * 109.47025 * 0.02562 * 6 5 4 8 8 F 1.39898 * 109.46906 * 119.99829 * 6 5 4 9 9 F 1.39892 * 109.47661 * 240.00434 * 6 5 4 10 10 C 1.41005 * 119.96403 * 0.02562 * 5 4 3 11 11 C 1.41009 * 120.07904 * 180.02562 * 10 5 4 12 12 H 1.08003 * 119.99998 * 334.19121 * 11 10 5 13 13 C 1.40184 * 120.00271 * 154.18222 * 11 10 5 14 14 N 1.30677 * 119.99737 * 342.85784 * 13 11 10 15 15 Si 1.86796 * 120.00182 * 162.85322 * 13 11 10 16 16 H 1.48499 * 109.47121 * 94.63826 * 15 13 11 17 17 H 1.48496 * 109.47279 * 214.64153 * 15 13 11 18 18 H 1.48512 * 109.47192 * 334.64057 * 15 13 11 19 19 C 1.40841 * 119.84477 * 0.02562 * 10 5 4 20 20 C 1.36524 * 119.87902 * 359.97438 * 19 10 5 21 21 F 1.35102 * 119.98150 * 179.97438 * 20 19 10 22 22 H 1.08009 * 119.93882 * 0.26084 * 4 3 2 23 23 H 0.97000 * 120.00167 * 180.02562 * 14 13 11 24 24 H 1.08004 * 120.05821 * 180.02562 * 19 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2680 -1.1594 -0.3604 5 6 4.6296 -1.1630 -0.3623 6 6 5.3797 -2.4111 -0.7506 7 9 4.4677 -3.4243 -1.0656 8 9 6.1832 -2.1447 -1.8644 9 9 6.1843 -2.8230 0.3171 10 6 5.3375 0.0016 -0.0006 11 6 6.7476 0.0007 -0.0023 12 1 7.2872 -0.9247 0.1358 13 6 7.4492 1.2007 -0.1833 14 7 6.8394 2.2459 -0.6768 15 14 9.2555 1.3059 0.2809 16 1 10.0909 1.0403 -0.9178 17 1 9.5545 2.6640 0.8017 18 1 9.5571 0.2967 1.3279 19 6 4.6329 1.1658 0.3622 20 6 3.2676 1.1624 0.3619 21 9 2.5896 2.2779 0.7101 22 1 2.7261 -2.0504 -0.6415 23 1 7.3249 3.0762 -0.8024 24 1 5.1716 2.0599 0.6394 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575648332.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:33 Heat of formation + Delta-G solvation = -165.056607 kcal Electronic energy + Delta-G solvation = -18883.520565 eV Core-core repulsion = 15067.755268 eV Total energy + Delta-G solvation = -3815.765297 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.30947 -48.10983 -46.88506 -46.67968 -38.21510 -35.75624 -34.27782 -30.91633 -30.34553 -26.81855 -24.71597 -22.51715 -21.16321 -18.61498 -18.22308 -17.62896 -17.59718 -16.42682 -16.05844 -15.18096 -14.93612 -14.81960 -13.81260 -13.67508 -13.30336 -13.25767 -13.17558 -12.98212 -12.93064 -12.85807 -12.60241 -12.51417 -12.11862 -11.88596 -11.48107 -11.44699 -11.08607 -10.78174 -10.40007 -10.29794 -9.72261 -8.19182 -8.06214 -7.48331 -5.18030 1.75235 2.15563 2.71786 2.77772 2.84778 3.42815 3.48138 3.57360 3.65315 4.22409 4.71203 4.79173 4.89326 5.11551 5.17029 5.42974 5.72303 6.26292 6.35042 6.51809 6.78011 6.84569 7.07955 7.16681 7.46556 7.84192 8.03621 8.05430 8.34985 9.41426 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.010052 C = 0.006791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.333145 B = 2784.921150 C = 4122.359572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.287 3.713 3 C -0.224 4.224 4 C 0.046 3.954 5 C -0.311 4.311 6 C 0.525 3.475 7 F -0.196 7.196 8 F -0.180 7.180 9 F -0.187 7.187 10 C 0.165 3.835 11 C -0.404 4.404 12 H 0.103 0.897 13 C 0.071 3.929 14 N -0.742 5.742 15 Si 0.922 3.078 16 H -0.261 1.261 17 H -0.268 1.268 18 H -0.251 1.251 19 C -0.195 4.195 20 C 0.173 3.827 21 F -0.151 7.151 22 H 0.122 0.878 23 H 0.298 0.702 24 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.914 -2.550 0.548 5.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.024 4.024 3 C -0.230 4.230 4 C 0.025 3.975 5 C -0.314 4.314 6 C 0.471 3.529 7 F -0.178 7.178 8 F -0.162 7.162 9 F -0.168 7.168 10 C 0.160 3.840 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.155 4.155 14 N -0.362 5.362 15 Si 0.743 3.257 16 H -0.185 1.185 17 H -0.192 1.192 18 H -0.174 1.174 19 C -0.215 4.215 20 C 0.151 3.849 21 F -0.130 7.130 22 H 0.140 0.860 23 H 0.110 0.890 24 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.177 -2.274 0.459 3.934 hybrid contribution 1.180 0.197 0.053 1.198 sum 4.358 -2.077 0.512 4.854 Atomic orbital electron populations 1.81084 1.12309 1.08869 1.14126 1.25599 0.92474 0.92638 0.91642 1.15143 0.83728 0.96239 1.27919 1.19919 0.92316 0.95096 0.90153 1.19239 0.93335 0.95548 1.23305 1.18106 0.76974 0.83407 0.74412 1.93069 1.67511 1.63935 1.93276 1.93162 1.75040 1.93927 1.54032 1.93122 1.75153 1.91604 1.56929 1.16974 0.93138 0.88646 0.85250 1.20241 0.91226 0.95839 1.35570 0.87913 1.26273 1.02998 0.94429 0.91808 1.69706 1.39855 1.02746 1.23875 0.86018 0.79389 0.79648 0.80597 1.18548 1.19195 1.17391 1.20865 0.90084 1.01461 1.09117 1.17236 0.89962 0.80636 0.97025 1.91413 1.80852 1.51067 1.89646 0.85988 0.89030 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.58 18.54 41.84 0.78 -9.80 14 2 C 0.29 6.04 14.95 -22.47 -0.34 5.70 14 3 C -0.22 -4.63 5.77 -106.44 -0.61 -5.24 14 4 C 0.05 0.90 9.08 -39.59 -0.36 0.54 14 5 C -0.31 -6.42 5.38 -104.32 -0.56 -6.98 14 6 C 0.52 10.14 2.82 36.01 0.10 10.24 14 7 F -0.20 -3.51 15.95 2.25 0.04 -3.48 14 8 F -0.18 -3.59 16.48 2.25 0.04 -3.55 14 9 F -0.19 -3.57 15.67 2.25 0.04 -3.53 14 10 C 0.16 3.62 5.55 -106.81 -0.59 3.03 14 11 C -0.40 -8.67 7.79 -37.80 -0.29 -8.97 14 12 H 0.10 2.15 6.03 -52.48 -0.32 1.83 14 13 C 0.07 1.44 5.14 -17.31 -0.09 1.35 14 14 N -0.74 -15.46 10.98 55.56 0.61 -14.85 14 15 Si 0.92 15.14 29.59 -169.99 -5.03 10.11 14 16 H -0.26 -4.29 7.11 56.52 0.40 -3.89 14 17 H -0.27 -4.28 7.11 56.52 0.40 -3.88 14 18 H -0.25 -4.13 7.11 56.52 0.40 -3.73 14 19 C -0.20 -4.27 8.59 -39.22 -0.34 -4.61 14 20 C 0.17 3.71 7.22 -39.40 -0.28 3.43 14 21 F -0.15 -3.22 16.79 2.25 0.04 -3.19 14 22 H 0.12 2.13 7.11 -52.48 -0.37 1.75 14 23 H 0.30 5.51 8.29 -40.82 -0.34 5.18 14 24 H 0.14 3.14 6.21 -52.48 -0.33 2.81 14 LS Contribution 245.25 15.07 3.70 3.70 Total: -1.00 -22.71 245.25 -3.32 -26.03 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -0.15 Total: 0.08 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -3.37 Total: -1.51 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 1.39 Total: -24.66 kcal Atomic # 9 Polarization: -13.90 SS G_CDS: 0.15 Total: -13.75 kcal Atomic # 14 Polarization: 15.14 SS G_CDS: -5.03 Total: 10.11 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -22.71 -3.32 -26.03 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575648332.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.024 kcal (2) G-P(sol) polarization free energy of solvation -22.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds