Wall clock time and date at job start Mon Mar 30 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39513 * 120.55026 * 344.91927 * 3 2 1 5 5 C 1.37923 * 120.06937 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.36604 * 179.97438 * 5 4 3 7 7 F 1.39903 * 109.47120 * 0.02562 * 6 5 4 8 8 F 1.39900 * 109.47151 * 119.99929 * 6 5 4 9 9 F 1.39905 * 109.47139 * 240.00123 * 6 5 4 10 10 C 1.38993 * 121.26757 * 359.97438 * 5 4 3 11 11 F 1.35096 * 119.43408 * 180.02562 * 10 5 4 12 12 C 1.37699 * 121.13500 * 0.02562 * 10 5 4 13 13 C 1.40764 * 119.82056 * 0.02562 * 12 10 5 14 14 C 1.40804 * 120.60099 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00498 * 204.43382 * 14 13 12 16 16 C 1.40248 * 119.99845 * 24.43179 * 14 13 12 17 17 N 1.30659 * 119.99724 * 17.42206 * 16 14 13 18 18 Si 1.86801 * 120.00038 * 197.42306 * 16 14 13 19 19 H 1.48501 * 109.47206 * 59.99939 * 18 16 14 20 20 H 1.48501 * 109.46906 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47079 * 299.99760 * 18 16 14 22 22 H 1.07992 * 119.96436 * 0.24855 * 4 3 2 23 23 H 1.07999 * 120.08437 * 180.02562 * 12 10 5 24 24 H 0.97004 * 120.00003 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2776 -1.1591 0.3126 5 6 4.6568 -1.1475 0.3091 6 6 5.4074 -2.4091 0.6497 7 9 4.4958 -3.4338 0.9262 8 9 6.2112 -2.7804 -0.4334 9 9 6.2118 -2.1845 1.7721 10 6 5.3677 0.0055 -0.0026 11 9 6.7183 -0.0250 0.0047 12 6 4.7191 1.1783 -0.3188 13 6 3.3120 1.2194 -0.3284 14 6 2.6319 2.4099 -0.6487 15 1 1.6259 2.5704 -0.2902 16 6 3.2610 3.3875 -1.4333 17 7 4.3127 3.0775 -2.1440 18 14 2.5952 5.1326 -1.4624 19 1 2.6287 5.6981 -0.0897 20 1 3.4324 5.9668 -2.3615 21 1 1.1956 5.1202 -1.9587 22 1 2.7465 -2.0681 0.5533 23 1 5.2884 2.0641 -0.5587 24 1 4.7481 3.7537 -2.6864 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575649683.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:30 Heat of formation + Delta-G solvation = -176.116227 kcal Electronic energy + Delta-G solvation = -18690.931962 eV Core-core repulsion = 14874.687083 eV Total energy + Delta-G solvation = -3816.244878 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.01599 -49.78648 -48.47313 -48.43081 -39.58132 -37.03725 -36.14720 -32.64524 -31.46187 -28.95975 -25.74621 -24.27338 -23.07612 -20.19859 -19.76690 -19.32617 -19.21706 -18.17161 -17.66681 -16.73920 -16.46256 -16.37752 -15.40112 -15.31941 -14.98314 -14.91008 -14.73782 -14.65459 -14.63988 -14.58278 -14.50015 -14.01234 -13.58959 -13.33634 -13.06327 -12.82314 -12.61746 -12.31504 -12.19597 -11.76786 -11.32961 -9.97707 -9.52610 -9.06937 -6.89481 0.08780 0.48597 1.35706 1.42884 1.51009 1.85256 1.98264 2.02912 2.08444 2.51611 3.00180 3.20794 3.23941 3.41215 3.63288 3.67520 4.08446 4.59506 4.69673 4.87422 5.13976 5.17919 5.35908 5.51563 5.79349 6.13259 6.35182 6.39770 6.84957 7.84138 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.025073 B = 0.007429 C = 0.006027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.460272 B = 3768.169062 C = 4644.678178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.308 3.692 3 C -0.199 4.199 4 C 0.057 3.943 5 C -0.368 4.368 6 C 0.528 3.472 7 F -0.179 7.179 8 F -0.189 7.189 9 F -0.187 7.187 10 C 0.169 3.831 11 F -0.150 7.150 12 C -0.210 4.210 13 C 0.149 3.851 14 C -0.413 4.413 15 H 0.094 0.906 16 C 0.040 3.960 17 N -0.760 5.760 18 Si 0.987 3.013 19 H -0.252 1.252 20 H -0.256 1.256 21 H -0.261 1.261 22 H 0.147 0.853 23 H 0.138 0.862 24 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.348 -0.525 1.526 3.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.002 4.002 3 C -0.204 4.204 4 C 0.036 3.964 5 C -0.372 4.372 6 C 0.474 3.526 7 F -0.160 7.160 8 F -0.170 7.170 9 F -0.169 7.169 10 C 0.149 3.851 11 F -0.128 7.128 12 C -0.230 4.230 13 C 0.143 3.857 14 C -0.437 4.437 15 H 0.112 0.888 16 C -0.185 4.185 17 N -0.380 5.380 18 Si 0.806 3.194 19 H -0.175 1.175 20 H -0.179 1.179 21 H -0.185 1.185 22 H 0.165 0.835 23 H 0.155 0.845 24 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.863 -0.492 1.337 2.345 hybrid contribution 0.755 0.332 -0.127 0.834 sum 2.618 -0.160 1.211 2.889 Atomic orbital electron populations 1.81067 1.12759 1.10050 1.14830 1.25482 0.92313 0.91428 0.90968 1.16748 0.83567 0.95275 1.24859 1.20338 0.90817 0.96528 0.88730 1.18905 0.94621 0.92871 1.30753 1.17919 0.76839 0.83887 0.73947 1.93102 1.66864 1.62213 1.93825 1.93158 1.75331 1.92708 1.55822 1.93158 1.75248 1.94792 1.53660 1.17263 0.75522 0.94260 0.98040 1.91419 1.30183 1.97261 1.93964 1.21084 0.94496 0.96761 1.10621 1.18452 0.90749 0.90447 0.86051 1.20225 1.01623 0.99063 1.22823 0.88823 1.27035 0.93978 1.05494 0.92023 1.69679 1.14946 1.38793 1.14559 0.85115 0.79531 0.74287 0.80471 1.17539 1.17901 1.18507 0.83516 0.84477 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.17 18.54 19.00 0.35 -21.82 14 2 C 0.31 13.01 14.30 88.33 1.26 14.27 14 3 C -0.20 -8.28 5.94 -19.57 -0.12 -8.39 14 4 C 0.06 2.15 9.12 22.50 0.21 2.35 14 5 C -0.37 -14.41 5.39 -19.76 -0.11 -14.51 14 6 C 0.53 18.98 3.00 71.24 0.21 19.20 14 7 F -0.18 -5.86 15.90 44.97 0.72 -5.14 14 8 F -0.19 -6.92 16.99 44.97 0.76 -6.15 14 9 F -0.19 -6.73 16.99 44.97 0.76 -5.96 14 10 C 0.17 7.13 7.08 22.32 0.16 7.28 14 11 F -0.15 -6.18 16.28 44.97 0.73 -5.45 14 12 C -0.21 -9.19 8.67 22.76 0.20 -9.00 14 13 C 0.15 6.62 5.74 -19.87 -0.11 6.51 14 14 C -0.41 -17.99 8.58 23.39 0.20 -17.79 14 15 H 0.09 4.05 7.38 -2.91 -0.02 4.03 14 16 C 0.04 1.58 5.16 85.36 0.44 2.02 14 17 N -0.76 -31.18 10.94 21.88 0.24 -30.94 14 18 Si 0.99 30.25 29.60 68.60 2.03 32.28 14 19 H -0.25 -7.60 7.11 99.48 0.71 -6.89 14 20 H -0.26 -7.22 7.11 99.48 0.71 -6.51 14 21 H -0.26 -8.15 7.11 99.48 0.71 -7.44 14 22 H 0.15 4.77 7.09 -2.91 -0.02 4.74 14 23 H 0.14 6.11 6.17 -2.91 -0.02 6.10 14 24 H 0.31 11.19 8.29 -92.71 -0.77 10.42 14 Total: -1.00 -46.01 248.47 9.23 -36.78 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: 1.29 Total: 4.46 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 2.34 Total: 1.95 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.59 Total: -52.76 kcal Atomic # 9 Polarization: -25.68 SS G_CDS: 2.98 Total: -22.71 kcal Atomic # 14 Polarization: 30.25 SS G_CDS: 2.03 Total: 32.28 kcal Total: -46.01 9.23 -36.78 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649683.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.335 kcal (2) G-P(sol) polarization free energy of solvation -46.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds