Wall clock time and date at job start Mon Mar 30 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39058 * 120.05737 * 351.94229 * 3 2 1 5 5 C 1.40454 * 119.62333 * 180.22537 * 4 3 2 6 6 C 1.41366 * 120.14384 * 179.78952 * 5 4 3 7 7 H 1.08002 * 120.00324 * 149.51638 * 6 5 4 8 8 C 1.39907 * 119.99530 * 329.51946 * 6 5 4 9 9 N 1.30854 * 119.99876 * 162.15958 * 8 6 5 10 10 Si 1.86800 * 120.00121 * 342.15471 * 8 6 5 11 11 H 1.48501 * 109.47026 * 95.37911 * 10 8 6 12 12 H 1.48494 * 109.47133 * 215.38293 * 10 8 6 13 13 H 1.48503 * 109.47279 * 335.38260 * 10 8 6 14 14 C 1.40884 * 119.72445 * 359.77341 * 5 4 3 15 15 C 1.50698 * 119.95182 * 179.97438 * 14 5 4 16 16 F 1.39901 * 109.46730 * 180.02562 * 15 14 5 17 17 F 1.39898 * 109.46924 * 300.01572 * 15 14 5 18 18 F 1.39899 * 109.47075 * 60.02070 * 15 14 5 19 19 C 1.37547 * 120.09523 * 359.97438 * 14 5 4 20 20 C 1.38750 * 120.38941 * 359.97438 * 19 14 5 21 21 F 1.35100 * 119.86282 * 179.97438 * 20 19 14 22 22 H 1.08003 * 120.18775 * 0.02562 * 4 3 2 23 23 H 0.96999 * 120.00182 * 180.02562 * 9 8 6 24 24 H 1.08000 * 119.80289 * 180.02562 * 19 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2651 -1.1907 0.1687 5 6 4.6696 -1.1789 0.1720 6 6 5.3892 -2.3830 0.3471 7 1 6.3596 -2.5038 -0.1115 8 6 4.8444 -3.4183 1.1144 9 7 5.3156 -4.6338 1.0020 10 14 3.4442 -3.0652 2.2995 11 1 2.1486 -3.3622 1.6374 12 1 3.5903 -3.9180 3.5064 13 1 3.4807 -1.6348 2.6967 14 6 5.3583 0.0380 -0.0003 15 6 6.8651 0.0567 0.0029 16 9 7.3156 1.3680 -0.1833 17 9 7.3349 -0.4280 1.2283 18 9 7.3438 -0.7525 -1.0331 19 6 4.6573 1.2090 -0.1715 20 6 3.2698 1.2022 -0.1765 21 9 2.5920 2.3586 -0.3449 22 1 2.7295 -2.1194 0.2997 23 1 4.9377 -5.3516 1.5337 24 1 5.1901 2.1391 -0.3036 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575649890.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:25 Heat of formation + Delta-G solvation = -167.162043 kcal Electronic energy + Delta-G solvation = -18976.030110 eV Core-core repulsion = 15160.173514 eV Total energy + Delta-G solvation = -3815.856596 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.87368 -49.63675 -48.41832 -48.27878 -40.08881 -37.71458 -35.73610 -33.13312 -32.43780 -28.02623 -26.64040 -23.97190 -23.37223 -20.39191 -19.41325 -19.28163 -19.17484 -18.89657 -17.42088 -16.90381 -16.50274 -16.38989 -15.54969 -15.30438 -15.11379 -15.03022 -14.83893 -14.77024 -14.58400 -14.50507 -14.46343 -14.33773 -13.87638 -13.65299 -13.36846 -12.88351 -12.67323 -12.35125 -12.15808 -11.76254 -11.23415 -10.16374 -9.71025 -9.11372 -6.76760 -0.44648 0.36560 1.20999 1.32158 1.42764 1.43953 1.68424 1.98131 2.01111 2.39919 2.68147 3.00581 3.06937 3.34233 3.51847 3.78005 4.02648 4.37889 4.42680 4.72268 4.90387 5.05787 5.12012 5.39467 5.76817 6.02590 6.22154 6.24287 6.47017 7.92691 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.014820 B = 0.013088 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.858455 B = 2138.902767 C = 3686.925421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.275 3.725 3 C 0.005 3.995 4 C -0.158 4.158 5 C 0.102 3.898 6 C -0.437 4.437 7 H 0.089 0.911 8 C 0.062 3.938 9 N -0.799 5.799 10 Si 0.931 3.069 11 H -0.254 1.254 12 H -0.266 1.266 13 H -0.237 1.237 14 C -0.261 4.261 15 C 0.527 3.473 16 F -0.181 7.181 17 F -0.182 7.182 18 F -0.187 7.187 19 C -0.036 4.036 20 C -0.002 4.002 21 F -0.147 7.147 22 H 0.130 0.870 23 H 0.305 0.695 24 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.379 5.387 0.725 5.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.039 4.039 3 C 0.001 3.999 4 C -0.180 4.180 5 C 0.098 3.902 6 C -0.463 4.463 7 H 0.107 0.893 8 C -0.160 4.160 9 N -0.421 5.421 10 Si 0.752 3.248 11 H -0.179 1.179 12 H -0.191 1.191 13 H -0.160 1.160 14 C -0.264 4.264 15 C 0.473 3.527 16 F -0.162 7.162 17 F -0.164 7.164 18 F -0.168 7.168 19 C -0.055 4.055 20 C -0.024 4.024 21 F -0.126 7.126 22 H 0.147 0.853 23 H 0.117 0.883 24 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.289 5.112 0.765 5.177 hybrid contribution 0.242 -0.202 0.305 0.439 sum -0.047 4.910 1.070 5.025 Atomic orbital electron populations 1.81123 1.12345 1.08551 1.09780 1.25723 0.92687 0.92607 0.92907 1.15876 0.83547 0.94364 1.06108 1.21045 0.93485 0.95698 1.07741 1.17177 0.91101 0.91874 0.90074 1.19808 1.05121 0.95762 1.25619 0.89269 1.26750 0.98528 0.93337 0.97421 1.69656 1.37935 1.01620 1.32931 0.85977 0.78375 0.81756 0.78686 1.17855 1.19136 1.15997 1.19653 0.90279 0.94870 1.21615 1.17909 0.88736 0.72613 0.73395 1.93100 1.91000 1.36996 1.95139 1.93166 1.90250 1.88237 1.44702 1.93144 1.90146 1.73933 1.59618 1.20499 0.91267 0.98478 0.95270 1.16772 0.89213 0.79946 1.16481 1.91412 1.80163 1.46772 1.94231 0.85265 0.88323 0.82054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -16.89 18.54 19.01 0.35 -16.54 14 2 C 0.28 10.17 14.95 88.33 1.32 11.49 14 3 C 0.01 0.20 5.73 -21.34 -0.12 0.08 14 4 C -0.16 -6.15 6.86 23.01 0.16 -6.00 14 5 C 0.10 4.22 5.07 -21.32 -0.11 4.11 14 6 C -0.44 -19.93 8.23 23.44 0.19 -19.74 14 7 H 0.09 4.41 6.34 -2.91 -0.02 4.39 14 8 C 0.06 2.74 5.40 85.24 0.46 3.20 14 9 N -0.80 -36.67 13.93 21.82 0.30 -36.36 14 10 Si 0.93 34.88 24.52 68.60 1.68 36.56 14 11 H -0.25 -9.11 6.72 99.48 0.67 -8.44 14 12 H -0.27 -9.47 7.11 99.48 0.71 -8.77 14 13 H -0.24 -8.91 6.86 99.48 0.68 -8.22 14 14 C -0.26 -9.84 5.42 -19.38 -0.11 -9.95 14 15 C 0.53 19.38 2.84 71.24 0.20 19.58 14 16 F -0.18 -5.79 15.95 44.97 0.72 -5.07 14 17 F -0.18 -7.09 16.54 44.97 0.74 -6.35 14 18 F -0.19 -7.26 15.65 44.97 0.70 -6.56 14 19 C -0.04 -1.21 9.38 22.23 0.21 -1.00 14 20 C 0.00 -0.06 7.30 22.88 0.17 0.10 14 21 F -0.15 -5.00 16.79 44.97 0.76 -4.24 14 22 H 0.13 4.96 4.79 -2.91 -0.01 4.94 14 23 H 0.31 12.45 8.30 -92.71 -0.77 11.68 14 24 H 0.16 4.44 7.12 -2.91 -0.02 4.42 14 Total: -1.00 -45.56 240.34 8.87 -36.69 By element: Atomic # 1 Polarization: -1.23 SS G_CDS: 1.24 Total: 0.00 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 2.37 Total: 1.87 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.66 Total: -52.90 kcal Atomic # 9 Polarization: -25.14 SS G_CDS: 2.92 Total: -22.22 kcal Atomic # 14 Polarization: 34.88 SS G_CDS: 1.68 Total: 36.56 kcal Total: -45.56 8.87 -36.69 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649890.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.474 kcal (2) G-P(sol) polarization free energy of solvation -45.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds