Wall clock time and date at job start Mon Mar 30 2020 06:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.46533 * 120.54943 * 317.87272 * 3 2 1 5 5 C 1.40816 * 120.60127 * 359.94823 * 4 3 2 6 6 H 1.07999 * 119.99815 * 336.33248 * 5 4 3 7 7 C 1.40233 * 120.00099 * 156.33040 * 5 4 3 8 8 N 1.30664 * 120.00164 * 341.48875 * 7 5 4 9 9 Si 1.86796 * 120.00101 * 161.48939 * 7 5 4 10 10 H 1.48506 * 109.47121 * 60.00168 * 9 7 5 11 11 H 1.48499 * 109.47250 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47318 * 300.00065 * 9 7 5 13 13 C 1.40741 * 118.80337 * 179.97438 * 4 3 2 14 14 C 1.37737 * 119.81993 * 359.97438 * 13 4 3 15 15 F 1.35100 * 119.43336 * 180.02562 * 14 13 4 16 16 C 1.38942 * 121.13231 * 359.97438 * 14 13 4 17 17 C 1.37966 * 121.26958 * 0.02562 * 16 14 13 18 18 C 1.50693 * 119.96462 * 179.97438 * 17 16 14 19 19 F 1.39897 * 109.47167 * 359.97438 * 18 17 16 20 20 F 1.39899 * 109.47354 * 119.99959 * 18 17 16 21 21 F 1.39908 * 109.46918 * 239.99884 * 18 17 16 22 22 H 0.97000 * 120.00125 * 179.97438 * 8 7 5 23 23 H 1.08001 * 120.08833 * 179.97438 * 13 4 3 24 24 H 1.08004 * 119.36387 * 180.28395 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3132 -0.9349 0.8465 5 6 2.6342 -1.8493 1.6746 6 1 1.6235 -1.6414 1.9936 7 6 3.2702 -3.0297 2.0852 8 7 4.3185 -3.4659 1.4386 9 14 2.6188 -3.9786 3.5564 10 1 1.2185 -4.3981 3.2944 11 1 3.4610 -5.1806 3.7825 12 1 2.6586 -3.1119 4.7616 13 6 4.7199 -0.9029 0.8173 14 6 5.3677 -0.0020 0.0013 15 9 6.7183 0.0217 -0.0210 16 6 4.6560 0.8822 -0.8001 17 6 3.2764 0.8904 -0.8074 18 6 2.5342 1.8625 -1.6877 19 9 3.4524 2.6452 -2.3959 20 9 1.7305 1.1559 -2.5888 21 9 1.7306 2.6894 -0.8953 22 1 4.7587 -4.2822 1.7228 23 1 5.2899 -1.5829 1.4331 24 1 5.1931 1.5736 -1.4325 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575650309.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:44 Heat of formation + Delta-G solvation = -162.232616 kcal Electronic energy + Delta-G solvation = -18774.413137 eV Core-core repulsion = 14958.770297 eV Total energy + Delta-G solvation = -3815.642840 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.67433 -48.07922 -47.20507 -47.11945 -38.00831 -35.29438 -34.49485 -30.99211 -30.09733 -26.36398 -25.46533 -22.29467 -21.42486 -18.72121 -18.06836 -17.99100 -17.65380 -16.78617 -15.84278 -15.32499 -14.90318 -14.72809 -14.06541 -13.98120 -13.59586 -13.58863 -13.31028 -13.23013 -13.18212 -12.86544 -12.79764 -12.18404 -11.91933 -11.78498 -11.55208 -11.34846 -11.04575 -10.79471 -10.66462 -10.19068 -9.75290 -8.35038 -7.84930 -7.44338 -5.09886 1.55801 2.08442 2.77600 2.80099 2.84231 3.17717 3.50266 3.64789 3.72896 4.14449 4.24134 4.56997 4.74529 5.01372 5.11751 5.35348 5.86605 6.20780 6.28002 6.49807 6.58387 6.83945 7.07742 7.20171 7.46311 7.84900 8.04076 8.11292 8.53608 9.44532 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.022556 B = 0.008295 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.083640 B = 3374.736568 C = 4372.261268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.285 3.715 3 C -0.150 4.150 4 C 0.159 3.841 5 C -0.409 4.409 6 H 0.096 0.904 7 C 0.073 3.927 8 N -0.749 5.749 9 Si 0.923 3.077 10 H -0.257 1.257 11 H -0.270 1.270 12 H -0.254 1.254 13 C -0.176 4.176 14 C 0.133 3.867 15 F -0.153 7.153 16 C -0.242 4.242 17 C -0.065 4.065 18 C 0.503 3.497 19 F -0.181 7.181 20 F -0.179 7.179 21 F -0.179 7.179 22 H 0.298 0.702 23 H 0.144 0.856 24 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.763 2.236 -0.190 3.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.026 4.026 3 C -0.156 4.156 4 C 0.154 3.846 5 C -0.435 4.435 6 H 0.114 0.886 7 C -0.153 4.153 8 N -0.370 5.370 9 Si 0.745 3.255 10 H -0.181 1.181 11 H -0.195 1.195 12 H -0.178 1.178 13 C -0.196 4.196 14 C 0.113 3.887 15 F -0.132 7.132 16 C -0.263 4.263 17 C -0.069 4.069 18 C 0.449 3.551 19 F -0.163 7.163 20 F -0.160 7.160 21 F -0.161 7.161 22 H 0.110 0.890 23 H 0.162 0.838 24 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.208 2.053 -0.248 2.395 hybrid contribution 0.420 -0.307 0.312 0.607 sum 1.628 1.746 0.064 2.388 Atomic orbital electron populations 1.81033 1.12241 1.10886 1.10995 1.25442 0.92461 0.92266 0.92449 1.16408 0.83698 1.07811 1.07727 1.18029 0.90279 0.88616 0.87725 1.19841 1.01305 1.00681 1.21625 0.88640 1.26233 0.93933 0.97666 0.97445 1.69676 1.14989 1.19143 1.33166 0.86062 0.80370 0.78723 0.80350 1.18139 1.19455 1.17832 1.21411 0.94575 1.00718 1.02856 1.17401 0.75735 0.97254 0.98323 1.91403 1.30207 1.95995 1.95623 1.19796 0.91766 1.06300 1.08412 1.19093 0.93615 0.96358 0.97865 1.18559 0.77337 0.80189 0.79050 1.93120 1.66522 1.76504 1.80108 1.93197 1.74862 1.78510 1.69418 1.93193 1.74911 1.73939 1.74027 0.89018 0.83816 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.13 18.54 41.84 0.78 -10.35 14 2 C 0.28 6.54 12.17 -22.47 -0.27 6.26 14 3 C -0.15 -3.36 5.92 -104.17 -0.62 -3.97 14 4 C 0.16 3.63 5.74 -104.64 -0.60 3.03 14 5 C -0.41 -9.21 8.59 -37.86 -0.33 -9.53 14 6 H 0.10 2.15 7.37 -52.49 -0.39 1.76 14 7 C 0.07 1.51 5.14 -17.30 -0.09 1.42 14 8 N -0.75 -15.84 10.96 55.56 0.61 -15.23 14 9 Si 0.92 15.73 29.60 -169.99 -5.03 10.70 14 10 H -0.26 -4.49 7.11 56.52 0.40 -4.09 14 11 H -0.27 -4.41 7.11 56.52 0.40 -4.01 14 12 H -0.25 -4.31 7.11 56.52 0.40 -3.91 14 13 C -0.18 -3.83 8.68 -38.82 -0.34 -4.16 14 14 C 0.13 2.73 7.26 -39.50 -0.29 2.45 14 15 F -0.15 -3.01 17.24 2.25 0.04 -2.97 14 16 C -0.24 -4.77 9.36 -39.42 -0.37 -5.14 14 17 C -0.07 -1.34 5.40 -104.26 -0.56 -1.90 14 18 C 0.50 9.65 2.89 36.00 0.10 9.76 14 19 F -0.18 -3.17 15.94 2.25 0.04 -3.13 14 20 F -0.18 -3.53 16.54 2.25 0.04 -3.49 14 21 F -0.18 -3.49 16.53 2.25 0.04 -3.45 14 22 H 0.30 5.61 8.29 -40.82 -0.34 5.27 14 23 H 0.14 3.15 6.15 -52.49 -0.32 2.83 14 24 H 0.13 2.21 7.10 -52.48 -0.37 1.84 14 LS Contribution 246.74 15.07 3.72 3.72 Total: -1.00 -22.97 246.74 -3.35 -26.32 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -0.22 Total: -0.31 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -3.36 Total: -1.79 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 1.38 Total: -25.58 kcal Atomic # 9 Polarization: -13.20 SS G_CDS: 0.15 Total: -13.05 kcal Atomic # 14 Polarization: 15.73 SS G_CDS: -5.03 Total: 10.70 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -22.97 -3.35 -26.32 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650309.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.908 kcal (2) G-P(sol) polarization free energy of solvation -22.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds