Wall clock time and date at job start Mon Mar 30 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.40044 * 119.88610 * 308.27330 * 3 2 1 5 5 C 1.36530 * 120.06859 * 180.02562 * 4 3 2 6 6 F 1.35101 * 120.08194 * 179.97438 * 5 4 3 7 7 C 1.41225 * 119.83025 * 0.02562 * 5 4 3 8 8 C 1.40889 * 120.10873 * 179.97438 * 7 5 4 9 9 H 1.08000 * 120.00468 * 24.85326 * 8 7 5 10 10 C 1.40204 * 119.99744 * 204.85753 * 8 7 5 11 11 N 1.30687 * 119.99552 * 18.07096 * 10 8 7 12 12 Si 1.86796 * 119.99811 * 198.07335 * 10 8 7 13 13 H 1.48494 * 109.47269 * 59.99925 * 12 10 8 14 14 H 1.48497 * 109.46986 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47054 * 299.99525 * 12 10 8 16 16 C 1.40935 * 119.77644 * 0.02562 * 7 5 4 17 17 C 1.36181 * 119.92985 * 359.97438 * 16 7 5 18 18 C 1.50697 * 119.91927 * 179.72478 * 17 16 7 19 19 F 1.39899 * 109.47000 * 359.97438 * 18 17 16 20 20 F 1.39903 * 109.47525 * 119.99452 * 18 17 16 21 21 F 1.39900 * 109.47222 * 240.00151 * 18 17 16 22 22 H 1.08001 * 119.96143 * 0.02562 * 4 3 2 23 23 H 0.97006 * 119.99153 * 179.97438 * 11 10 8 24 24 H 1.08007 * 120.03693 * 179.97438 * 16 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2662 -0.7511 0.9532 5 6 4.6315 -0.7528 0.9570 6 9 5.3052 -1.4776 1.8768 7 6 5.3375 0.0058 -0.0024 8 6 6.7464 0.0088 -0.0036 9 1 7.2886 -0.8245 0.4184 10 6 7.4446 1.0936 -0.5524 11 7 6.8369 2.2358 -0.7371 12 14 9.2435 0.9064 -1.0198 13 1 9.3809 -0.1625 -2.0413 14 1 9.7470 2.1889 -1.5737 15 1 10.0328 0.5443 0.1849 16 6 4.6280 0.7608 -0.9579 17 6 3.2662 0.7556 -0.9530 18 6 2.5078 1.5678 -1.9708 19 9 3.4129 2.2345 -2.8036 20 9 1.7041 0.7192 -2.7397 21 9 1.7025 2.5043 -1.3139 22 1 2.7239 -1.3302 1.6861 23 1 7.3201 2.9864 -1.1165 24 1 5.1637 1.3428 -1.6933 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575650708.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:21 Heat of formation + Delta-G solvation = -161.566590 kcal Electronic energy + Delta-G solvation = -18893.338590 eV Core-core repulsion = 15077.724631 eV Total energy + Delta-G solvation = -3815.613959 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.54452 -47.66273 -47.05377 -47.01265 -38.27188 -35.72440 -34.31568 -30.96173 -30.48087 -26.51821 -25.12943 -22.58155 -21.07560 -18.56649 -18.23222 -17.87744 -17.81925 -16.66286 -15.83398 -15.26180 -14.52601 -14.45588 -13.96187 -13.93563 -13.74738 -13.46815 -13.23480 -13.18811 -12.96590 -12.92807 -12.74084 -12.35291 -12.09605 -11.97466 -11.43333 -11.37789 -11.06633 -10.87367 -10.45947 -10.25711 -9.74545 -8.23775 -8.07806 -7.46278 -5.00785 1.57084 2.18800 2.73030 2.78542 2.81525 3.32795 3.44501 3.48178 3.58075 4.19837 4.41061 4.71663 4.74486 4.84153 5.17405 5.57240 5.70213 6.31301 6.34860 6.52641 6.72134 6.76041 7.10146 7.33653 7.38093 7.82357 8.02655 8.11928 8.32071 9.44301 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.008671 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.262612 B = 3228.201668 C = 4231.973946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.275 3.725 3 C -0.144 4.144 4 C -0.053 4.053 5 C -0.016 4.016 6 F -0.152 7.152 7 C 0.094 3.906 8 C -0.401 4.401 9 H 0.100 0.900 10 C 0.067 3.933 11 N -0.748 5.748 12 Si 0.925 3.075 13 H -0.255 1.255 14 H -0.271 1.271 15 H -0.257 1.257 16 C -0.106 4.106 17 C -0.112 4.112 18 C 0.502 3.498 19 F -0.178 7.178 20 F -0.184 7.184 21 F -0.182 7.182 22 H 0.120 0.880 23 H 0.299 0.701 24 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.776 -0.189 -1.953 3.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.037 4.037 3 C -0.150 4.150 4 C -0.074 4.074 5 C -0.037 4.037 6 F -0.131 7.131 7 C 0.089 3.911 8 C -0.427 4.427 9 H 0.118 0.882 10 C -0.158 4.158 11 N -0.369 5.369 12 Si 0.747 3.253 13 H -0.179 1.179 14 H -0.195 1.195 15 H -0.181 1.181 16 C -0.126 4.126 17 C -0.116 4.116 18 C 0.449 3.551 19 F -0.159 7.159 20 F -0.166 7.166 21 F -0.164 7.164 22 H 0.138 0.862 23 H 0.111 0.889 24 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.051 0.085 -2.024 2.282 hybrid contribution 1.115 0.137 -0.180 1.137 sum 2.165 0.222 -2.204 3.098 Atomic orbital electron populations 1.81079 1.12224 1.11524 1.10193 1.25758 0.92689 0.92471 0.92750 1.14485 0.83217 1.12085 1.05205 1.20092 0.92399 0.97769 0.97177 1.17191 0.88853 1.04325 0.93290 1.91340 1.80781 1.76256 1.64713 1.17624 0.93958 0.90236 0.89261 1.19937 0.91053 1.03141 1.28580 0.88159 1.26276 1.02931 0.93974 0.92611 1.69677 1.39976 1.01388 1.25818 0.86025 0.79276 0.79468 0.80483 1.17908 1.19530 1.18137 1.20768 0.90094 1.01888 0.99838 1.19261 0.94746 1.00908 0.96656 1.18600 0.77363 0.78264 0.80922 1.93140 1.67221 1.81817 1.73716 1.93171 1.75129 1.70917 1.77358 1.93175 1.74924 1.67280 1.80987 0.86156 0.88910 0.83495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.30 18.54 41.84 0.78 -9.52 14 2 C 0.27 5.79 13.13 -22.47 -0.30 5.49 14 3 C -0.14 -2.99 5.74 -106.56 -0.61 -3.60 14 4 C -0.05 -1.05 9.66 -39.52 -0.38 -1.43 14 5 C -0.02 -0.34 7.26 -39.06 -0.28 -0.63 14 6 F -0.15 -3.19 16.69 2.25 0.04 -3.16 14 7 C 0.09 2.10 5.58 -106.74 -0.60 1.50 14 8 C -0.40 -8.73 8.76 -37.84 -0.33 -9.06 14 9 H 0.10 2.09 7.73 -52.49 -0.41 1.69 14 10 C 0.07 1.36 5.13 -17.30 -0.09 1.28 14 11 N -0.75 -15.71 10.97 55.56 0.61 -15.10 14 12 Si 0.93 15.10 29.60 -169.99 -5.03 10.07 14 13 H -0.26 -4.15 7.11 56.52 0.40 -3.75 14 14 H -0.27 -4.32 7.11 56.52 0.40 -3.91 14 15 H -0.26 -4.20 7.11 56.52 0.40 -3.80 14 16 C -0.11 -2.32 8.01 -39.30 -0.31 -2.64 14 17 C -0.11 -2.36 5.36 -104.63 -0.56 -2.92 14 18 C 0.50 10.14 2.88 36.00 0.10 10.25 14 19 F -0.18 -3.46 15.94 2.25 0.04 -3.43 14 20 F -0.18 -3.68 16.52 2.25 0.04 -3.65 14 21 F -0.18 -3.74 16.50 2.25 0.04 -3.70 14 22 H 0.12 2.10 8.06 -52.49 -0.42 1.68 14 23 H 0.30 5.62 8.29 -40.82 -0.34 5.28 14 24 H 0.15 3.24 5.22 -52.48 -0.27 2.97 14 LS Contribution 246.90 15.07 3.72 3.72 Total: -1.00 -23.00 246.90 -3.37 -26.38 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -0.24 Total: 0.15 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -3.36 Total: -1.76 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 1.39 Total: -24.63 kcal Atomic # 9 Polarization: -14.08 SS G_CDS: 0.15 Total: -13.93 kcal Atomic # 14 Polarization: 15.10 SS G_CDS: -5.03 Total: 10.07 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -23.00 -3.37 -26.38 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650708.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.191 kcal (2) G-P(sol) polarization free energy of solvation -23.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds