Wall clock time and date at job start Mon Mar 30 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.40044 * 119.88610 * 308.27330 * 3 2 1 5 5 C 1.36530 * 120.06859 * 180.02562 * 4 3 2 6 6 F 1.35101 * 120.08194 * 179.97438 * 5 4 3 7 7 C 1.41225 * 119.83025 * 0.02562 * 5 4 3 8 8 C 1.40889 * 120.10873 * 179.97438 * 7 5 4 9 9 H 1.08000 * 120.00468 * 24.85326 * 8 7 5 10 10 C 1.40204 * 119.99744 * 204.85753 * 8 7 5 11 11 N 1.30687 * 119.99552 * 18.07096 * 10 8 7 12 12 Si 1.86796 * 119.99811 * 198.07335 * 10 8 7 13 13 H 1.48494 * 109.47269 * 59.99925 * 12 10 8 14 14 H 1.48497 * 109.46986 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47054 * 299.99525 * 12 10 8 16 16 C 1.40935 * 119.77644 * 0.02562 * 7 5 4 17 17 C 1.36181 * 119.92985 * 359.97438 * 16 7 5 18 18 C 1.50697 * 119.91927 * 179.72478 * 17 16 7 19 19 F 1.39899 * 109.47000 * 359.97438 * 18 17 16 20 20 F 1.39903 * 109.47525 * 119.99452 * 18 17 16 21 21 F 1.39900 * 109.47222 * 240.00151 * 18 17 16 22 22 H 1.08001 * 119.96143 * 0.02562 * 4 3 2 23 23 H 0.97006 * 119.99153 * 179.97438 * 11 10 8 24 24 H 1.08007 * 120.03693 * 179.97438 * 16 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2662 -0.7511 0.9532 5 6 4.6315 -0.7528 0.9570 6 9 5.3052 -1.4776 1.8768 7 6 5.3375 0.0058 -0.0024 8 6 6.7464 0.0088 -0.0036 9 1 7.2886 -0.8245 0.4184 10 6 7.4446 1.0936 -0.5524 11 7 6.8369 2.2358 -0.7371 12 14 9.2435 0.9064 -1.0198 13 1 9.3809 -0.1625 -2.0413 14 1 9.7470 2.1889 -1.5737 15 1 10.0328 0.5443 0.1849 16 6 4.6280 0.7608 -0.9579 17 6 3.2662 0.7556 -0.9530 18 6 2.5078 1.5678 -1.9708 19 9 3.4129 2.2345 -2.8036 20 9 1.7041 0.7192 -2.7397 21 9 1.7025 2.5043 -1.3139 22 1 2.7239 -1.3302 1.6861 23 1 7.3201 2.9864 -1.1165 24 1 5.1637 1.3428 -1.6933 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575650708.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:21 Heat of formation + Delta-G solvation = -170.750859 kcal Electronic energy + Delta-G solvation = -18893.736850 eV Core-core repulsion = 15077.724631 eV Total energy + Delta-G solvation = -3816.012218 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.16783 -49.31642 -48.66249 -48.64528 -39.91726 -37.40358 -35.92852 -32.60767 -32.11939 -28.16800 -26.76789 -24.21462 -22.71884 -20.20324 -19.87273 -19.50420 -19.43745 -18.30958 -17.39511 -16.89868 -16.15528 -16.03380 -15.59202 -15.54045 -15.32116 -15.08866 -14.84384 -14.80788 -14.61703 -14.48636 -14.39374 -14.00915 -13.67755 -13.57726 -13.03867 -12.85967 -12.60863 -12.34576 -12.04970 -11.80652 -11.25250 -9.88148 -9.74620 -9.01213 -6.67450 -0.07969 0.54463 1.38972 1.45143 1.57405 1.68752 1.76881 1.99121 2.13912 2.57508 2.76922 3.08982 3.10898 3.17616 3.53224 3.93633 4.12439 4.68193 4.72095 4.94047 5.08916 5.10285 5.44149 5.65965 5.75400 6.16976 6.40070 6.46204 6.64658 7.92380 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.008671 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.262612 B = 3228.201668 C = 4231.973946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.284 3.716 3 C -0.153 4.153 4 C -0.040 4.040 5 C -0.032 4.032 6 F -0.152 7.152 7 C 0.073 3.927 8 C -0.419 4.419 9 H 0.103 0.897 10 C 0.037 3.963 11 N -0.771 5.771 12 Si 0.992 3.008 13 H -0.253 1.253 14 H -0.262 1.262 15 H -0.255 1.255 16 C -0.115 4.115 17 C -0.114 4.114 18 C 0.506 3.494 19 F -0.174 7.174 20 F -0.182 7.182 21 F -0.184 7.184 22 H 0.146 0.854 23 H 0.309 0.691 24 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.695 -0.240 -2.071 4.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.027 4.027 3 C -0.159 4.159 4 C -0.062 4.062 5 C -0.052 4.052 6 F -0.131 7.131 7 C 0.068 3.932 8 C -0.444 4.444 9 H 0.121 0.879 10 C -0.187 4.187 11 N -0.392 5.392 12 Si 0.811 3.189 13 H -0.177 1.177 14 H -0.186 1.186 15 H -0.179 1.179 16 C -0.134 4.134 17 C -0.118 4.118 18 C 0.452 3.548 19 F -0.155 7.155 20 F -0.164 7.164 21 F -0.165 7.165 22 H 0.164 0.836 23 H 0.121 0.879 24 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.948 0.036 -2.138 2.892 hybrid contribution 0.849 0.179 -0.134 0.878 sum 2.797 0.215 -2.272 3.610 Atomic orbital electron populations 1.81086 1.12527 1.12092 1.10707 1.25720 0.92572 0.92051 0.92340 1.14539 0.83097 1.12652 1.05661 1.20272 0.91957 0.96965 0.96973 1.17279 0.89410 1.04980 0.93578 1.91329 1.80872 1.76266 1.64670 1.17910 0.94670 0.90806 0.89779 1.20246 0.91219 1.03818 1.29109 0.87869 1.27058 1.06674 0.93135 0.91822 1.69685 1.41755 1.02147 1.25588 0.85044 0.74143 0.79663 0.80088 1.17698 1.18607 1.17890 1.20711 0.90343 1.02343 1.00032 1.19357 0.94676 1.00906 0.96890 1.18479 0.77304 0.78171 0.80838 1.93146 1.67091 1.81713 1.73545 1.93173 1.75067 1.70884 1.77263 1.93170 1.74965 1.67322 1.81074 0.83646 0.87863 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -20.60 18.54 19.00 0.35 -20.25 14 2 C 0.28 11.63 13.13 88.33 1.16 12.79 14 3 C -0.15 -6.22 5.74 -21.12 -0.12 -6.35 14 4 C -0.04 -1.56 9.66 22.31 0.22 -1.34 14 5 C -0.03 -1.34 7.26 22.60 0.16 -1.18 14 6 F -0.15 -6.29 16.69 44.97 0.75 -5.54 14 7 C 0.07 3.25 5.58 -21.24 -0.12 3.13 14 8 C -0.42 -17.99 8.76 23.40 0.21 -17.78 14 9 H 0.10 4.25 7.73 -2.91 -0.02 4.23 14 10 C 0.04 1.44 5.13 85.34 0.44 1.87 14 11 N -0.77 -31.77 10.97 21.87 0.24 -31.53 14 12 Si 0.99 29.48 29.60 68.60 2.03 31.51 14 13 H -0.25 -7.42 7.11 99.48 0.71 -6.71 14 14 H -0.26 -7.38 7.11 99.48 0.71 -6.67 14 15 H -0.26 -7.46 7.11 99.48 0.71 -6.75 14 16 C -0.11 -4.99 8.01 22.45 0.18 -4.81 14 17 C -0.11 -4.77 5.36 -19.87 -0.11 -4.88 14 18 C 0.51 20.05 2.88 71.24 0.21 20.26 14 19 F -0.17 -6.65 15.94 44.97 0.72 -5.94 14 20 F -0.18 -7.12 16.52 44.97 0.74 -6.38 14 21 F -0.18 -7.39 16.50 44.97 0.74 -6.65 14 22 H 0.15 4.78 8.06 -2.91 -0.02 4.76 14 23 H 0.31 11.27 8.29 -92.70 -0.77 10.50 14 24 H 0.14 6.25 5.22 -2.91 -0.02 6.24 14 Total: -1.00 -46.54 246.90 9.09 -37.46 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 1.29 Total: 5.58 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 2.22 Total: 1.72 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.59 Total: -51.77 kcal Atomic # 9 Polarization: -27.45 SS G_CDS: 2.95 Total: -24.50 kcal Atomic # 14 Polarization: 29.48 SS G_CDS: 2.03 Total: 31.51 kcal Total: -46.54 9.09 -37.46 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650708.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.294 kcal (2) G-P(sol) polarization free energy of solvation -46.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds