Wall clock time and date at job start Mon Mar 30 2020 07:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00191 * 2 1 4 4 H 1.48497 * 109.47146 * 270.00619 * 3 2 1 5 5 H 1.48501 * 109.46993 * 30.00133 * 3 2 1 6 6 H 1.48497 * 109.47431 * 150.00083 * 3 2 1 7 7 C 1.37882 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99898 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99493 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47069 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47442 * 179.97438 * 10 9 7 12 12 C 1.34776 * 120.00189 * 179.97438 * 11 10 9 13 13 O 1.21704 * 119.99998 * 0.02562 * 12 11 10 14 14 C 1.46653 * 120.00321 * 180.02562 * 12 11 10 15 15 C 1.36544 * 125.98987 * 180.02562 * 14 12 11 16 16 C 1.40365 * 106.70793 * 180.02562 * 15 14 12 17 17 C 1.35130 * 107.11495 * 359.97438 * 16 15 14 18 18 C 1.50706 * 125.61365 * 180.02562 * 17 16 15 19 19 F 1.39897 * 109.47068 * 299.99651 * 18 17 16 20 20 F 1.39895 * 109.47042 * 59.99960 * 18 17 16 21 21 O 1.33928 * 108.76701 * 0.26306 * 17 16 15 22 22 H 0.97005 * 119.99879 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47398 * 60.00333 * 9 7 2 24 24 H 1.08999 * 109.47333 * 299.99856 * 9 7 2 25 25 H 1.09006 * 109.47242 * 60.00081 * 10 9 7 26 26 H 1.09006 * 109.47496 * 300.00400 * 10 9 7 27 27 H 0.97000 * 120.00405 * 0.02562 * 11 10 9 28 28 H 1.07994 * 126.64880 * 359.97438 * 15 14 12 29 29 H 1.08006 * 126.44356 * 180.02562 * 16 15 14 30 30 H 1.09001 * 109.46953 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 7 5.4865 -2.6366 -0.0035 12 6 6.1604 -3.8038 -0.0041 13 8 5.5518 -4.8578 -0.0042 14 6 7.6269 -3.8039 -0.0047 15 6 8.4292 -4.9087 -0.0059 16 6 9.7542 -4.4453 -0.0055 17 6 9.7031 -3.0949 -0.0047 18 6 10.8943 -2.1717 -0.0046 19 9 11.6672 -2.4079 1.1373 20 9 11.6665 -2.4067 -1.1473 21 8 8.4197 -2.7123 0.0012 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6805 0.8889 24 1 3.8745 -0.6801 -0.8911 25 1 3.6578 -3.1498 -0.8925 26 1 3.6585 -3.1511 0.8875 27 1 5.9716 -1.7966 -0.0030 28 1 8.1069 -5.9394 -0.0061 29 1 10.6466 -5.0536 -0.0065 30 1 10.5519 -1.1369 -0.0044 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599751752.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:19 Heat of formation + Delta-G solvation = -148.515993 kcal Electronic energy + Delta-G solvation = -18290.591334 eV Core-core repulsion = 14722.463902 eV Total energy + Delta-G solvation = -3568.127432 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.17423 -48.18210 -43.97130 -40.64956 -36.84164 -34.92523 -34.37581 -32.73094 -31.74847 -28.15625 -26.51087 -23.78700 -22.90158 -22.63785 -21.50938 -19.76613 -19.01196 -18.58332 -18.51441 -18.23445 -17.45596 -16.91629 -16.37037 -16.25054 -15.59248 -15.06663 -14.91701 -14.84315 -14.64000 -14.53320 -14.32216 -14.24176 -14.04430 -13.39181 -13.08247 -12.41991 -12.28576 -12.21081 -11.77872 -11.60951 -11.41514 -11.30335 -10.79374 -10.37603 -9.96459 -8.30314 -6.37776 -0.34522 0.99770 1.00308 1.39480 1.41706 1.52709 1.93943 1.96629 2.36575 2.75934 3.02557 3.04955 3.52089 3.66574 3.78217 3.82206 4.27056 4.34893 4.38471 4.39241 4.67650 4.71557 4.98183 5.08483 5.28991 5.36990 5.48848 5.59824 6.19959 6.35113 6.69740 6.90281 7.26963 8.86289 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.027406 B = 0.004053 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.420837 B = 6906.071644 C = 7742.395573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.237 1.237 7 C -0.539 4.539 8 H 0.032 0.968 9 C -0.015 4.015 10 C 0.142 3.858 11 N -0.702 5.702 12 C 0.595 3.405 13 O -0.556 6.556 14 C -0.063 4.063 15 C -0.123 4.123 16 C -0.162 4.162 17 C -0.080 4.080 18 C 0.364 3.636 19 F -0.189 7.189 20 F -0.188 7.188 21 O -0.146 6.146 22 H 0.268 0.732 23 H 0.038 0.962 24 H 0.036 0.964 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.416 0.584 28 H 0.176 0.824 29 H 0.188 0.812 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.441 -2.402 0.012 26.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.160 1.160 7 C -0.578 4.578 8 H 0.051 0.949 9 C -0.052 4.052 10 C 0.019 3.981 11 N -0.352 5.352 12 C 0.382 3.618 13 O -0.437 6.437 14 C -0.116 4.116 15 C -0.143 4.143 16 C -0.181 4.181 17 C -0.133 4.133 18 C 0.311 3.689 19 F -0.170 7.170 20 F -0.170 7.170 21 O -0.042 6.042 22 H 0.077 0.923 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.253 0.747 28 H 0.194 0.806 29 H 0.206 0.794 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 25.755 -2.720 0.017 25.898 hybrid contribution -0.221 0.515 -0.022 0.560 sum 25.535 -2.205 -0.004 25.630 Atomic orbital electron populations 1.70072 1.08556 1.28441 1.51883 1.26049 0.95648 1.03775 0.93670 0.85575 0.79689 0.77522 0.79330 1.19003 1.21288 1.16022 1.21229 0.91400 0.93512 1.51632 0.94933 1.19671 0.94600 0.92727 0.98229 1.21227 0.76910 0.98994 1.01008 1.46031 1.08283 1.08491 1.72371 1.16774 0.83729 0.84339 0.76975 1.90879 1.67858 1.32268 1.52655 1.22039 0.90727 0.85762 1.13060 1.22284 0.91891 1.00292 0.99840 1.22038 0.99040 0.93643 1.03380 1.23452 0.84357 0.96044 1.09410 1.19425 0.78645 0.99581 0.71283 1.93070 1.76521 1.96303 1.51069 1.93070 1.76555 1.96323 1.51005 1.83942 1.15534 1.34155 1.70599 0.92307 0.94407 0.94551 0.92667 0.92666 0.74733 0.80621 0.79444 0.81018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.47 13.96 21.45 0.30 -58.17 16 2 C 0.01 0.33 5.47 84.66 0.46 0.80 16 3 Si 0.96 41.56 27.47 68.60 1.88 43.44 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.24 -9.13 6.54 99.48 0.65 -8.48 16 7 C -0.54 -30.13 9.66 25.60 0.25 -29.88 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 9 C -0.01 -0.63 4.15 29.85 0.12 -0.50 16 10 C 0.14 5.56 5.61 86.38 0.48 6.04 16 11 N -0.70 -22.03 5.55 -467.09 -2.59 -24.62 16 12 C 0.60 19.09 7.79 86.44 0.67 19.77 16 13 O -0.56 -21.69 16.87 -4.36 -0.07 -21.76 16 14 C -0.06 -1.60 7.13 24.07 0.17 -1.43 16 15 C -0.12 -2.62 10.62 22.39 0.24 -2.39 16 16 C -0.16 -2.74 10.77 22.07 0.24 -2.50 16 17 C -0.08 -1.36 6.75 24.97 0.17 -1.19 16 18 C 0.36 4.15 5.76 71.24 0.41 4.56 16 19 F -0.19 -2.65 17.32 44.97 0.78 -1.87 16 20 F -0.19 -2.65 17.32 44.97 0.78 -1.87 16 21 O -0.15 -3.08 10.40 -5.02 -0.05 -3.13 16 22 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 23 H 0.04 1.54 7.20 -2.38 -0.02 1.52 16 24 H 0.04 1.46 7.57 -2.39 -0.02 1.44 16 25 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 26 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 27 H 0.42 10.66 8.23 -92.71 -0.76 9.90 16 28 H 0.18 3.41 8.06 -2.91 -0.02 3.38 16 29 H 0.19 2.14 8.06 -2.91 -0.02 2.11 16 30 H 0.17 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -69.62 283.19 4.61 -65.01 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.37 Total: 9.69 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 3.22 Total: -6.72 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -2.29 Total: -82.80 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.13 Total: -24.89 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 1.56 Total: -3.74 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.88 Total: 43.44 kcal Total: -69.62 4.61 -65.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599751752.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.504 kcal (2) G-P(sol) polarization free energy of solvation -69.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds