Wall clock time and date at job start Mon Mar 30 2020 06:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46869 * 2 1 4 4 N 1.46493 * 109.47191 * 119.99920 * 2 1 3 5 5 C 1.36942 * 120.00341 * 295.91680 * 4 2 1 6 6 H 1.07996 * 119.99537 * 41.57386 * 5 4 2 7 7 C 1.38813 * 119.99916 * 221.58359 * 5 4 2 8 8 N 1.31610 * 120.00328 * 14.46857 * 7 5 4 9 9 Si 1.86805 * 119.99595 * 194.47209 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99732 * 9 7 5 11 11 H 1.48499 * 109.47043 * 209.99424 * 9 7 5 12 12 H 1.48500 * 109.47192 * 329.99798 * 9 7 5 13 13 C 1.46501 * 119.99973 * 115.91329 * 4 2 1 14 14 C 1.50698 * 109.46972 * 269.99829 * 13 4 2 15 15 C 1.38478 * 122.55554 * 104.74006 * 14 13 4 16 16 C 1.33340 * 114.93086 * 179.75924 * 15 14 13 17 17 S 1.75879 * 109.62217 * 0.47903 * 16 15 14 18 18 C 1.33495 * 122.56459 * 285.02168 * 14 13 4 19 19 Cl 1.73601 * 125.20499 * 359.97438 * 18 14 13 20 20 H 1.08994 * 109.47299 * 302.63723 * 1 2 3 21 21 H 1.08999 * 109.46712 * 62.63799 * 1 2 3 22 22 H 1.09001 * 109.46633 * 182.63368 * 1 2 3 23 23 H 1.09000 * 109.47525 * 240.00498 * 2 1 3 24 24 H 1.09005 * 109.46797 * 181.88989 * 3 2 1 25 25 H 1.09000 * 109.47202 * 301.89300 * 3 2 1 26 26 H 1.09005 * 109.47122 * 61.89744 * 3 2 1 27 27 H 0.96996 * 120.00162 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.47017 * 150.00237 * 13 4 2 29 29 H 1.08998 * 109.47203 * 30.00046 * 13 4 2 30 30 H 1.08003 * 122.53431 * 359.97157 * 15 14 13 31 31 H 1.08002 * 125.19109 * 180.22510 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7579 -0.1760 2.4382 6 1 0.7828 0.2316 2.6601 7 6 2.7474 -0.1782 3.4117 8 7 4.0001 -0.4026 3.0764 9 14 2.3008 0.1374 5.1980 10 1 1.9885 -1.1520 5.8653 11 1 3.4448 0.7869 5.8869 12 1 1.1142 1.0279 5.2617 13 6 2.7853 -1.9317 1.0636 14 6 1.8433 -3.1080 1.0766 15 6 1.5147 -3.8123 -0.0695 16 6 0.6718 -4.8284 0.1175 17 16 0.2344 -4.9277 1.8181 18 6 1.2578 -3.5472 2.1930 19 17 1.4738 -2.8613 3.7730 20 1 -0.3633 0.5542 0.8653 21 1 -0.3633 0.4723 -0.9127 22 1 -0.3632 -1.0266 0.0472 23 1 1.8934 -0.5137 -0.8900 24 1 3.1295 1.4427 -0.0339 25 1 1.6492 1.9661 -0.8725 26 1 1.7046 1.9465 0.9066 27 1 4.6915 -0.4044 3.7567 28 1 3.4847 -2.0172 1.8951 29 1 3.3376 -1.9190 0.1240 30 1 1.9138 -3.5599 -1.0408 31 1 0.3094 -5.4872 -0.6578 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687986111.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:07 Heat of formation + Delta-G solvation = 45.236035 kcal Electronic energy + Delta-G solvation = -15994.480533 eV Core-core repulsion = 13429.304371 eV Total energy + Delta-G solvation = -2565.176162 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -37.93399 -35.85334 -35.47499 -32.33215 -30.33807 -28.25211 -26.13033 -25.94050 -23.53739 -21.87493 -19.49217 -18.31006 -17.26201 -16.17067 -15.11067 -14.43820 -14.22446 -13.68077 -13.15011 -12.98951 -12.70245 -12.45680 -12.35474 -11.62264 -11.29896 -11.22061 -11.15264 -10.90367 -10.63450 -10.61234 -10.39447 -10.24655 -9.95766 -9.89015 -9.57169 -9.53384 -8.34472 -7.96785 -7.73365 -6.46334 -5.73178 -3.32564 1.49261 1.83748 2.40476 3.16508 3.31790 3.34269 3.43210 3.55121 4.49947 5.35659 5.46908 5.54918 5.88193 6.00038 6.12717 6.29788 6.36873 6.42940 6.48979 6.60860 6.74588 6.82129 6.84892 7.00113 7.18638 7.26580 7.38482 7.68548 7.90978 8.62472 9.25529 9.85857 10.45792 11.27710 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.018577 B = 0.011999 C = 0.008460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.847677 B = 2332.969770 C = 3308.885334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.167 3.833 3 C -0.144 4.144 4 N -0.566 5.566 5 C -0.237 4.237 6 H 0.055 0.945 7 C 0.031 3.969 8 N -0.886 5.886 9 Si 0.873 3.127 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.193 3.807 14 C -0.098 4.098 15 C -0.110 4.110 16 C -0.224 4.224 17 S 0.063 5.937 18 C -0.123 4.123 19 Cl 0.007 6.993 20 H 0.051 0.949 21 H 0.034 0.966 22 H 0.042 0.958 23 H 0.044 0.956 24 H 0.048 0.952 25 H 0.028 0.972 26 H 0.058 0.942 27 H 0.254 0.746 28 H 0.112 0.888 29 H 0.034 0.966 30 H 0.136 0.864 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 -6.170 -4.938 9.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.060 3.940 3 C -0.203 4.203 4 N -0.285 5.285 5 C -0.367 4.367 6 H 0.073 0.927 7 C -0.169 4.169 8 N -0.528 5.528 9 Si 0.703 3.297 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.201 1.201 13 C 0.064 3.936 14 C -0.113 4.113 15 C -0.142 4.142 16 C -0.360 4.360 17 S 0.323 5.677 18 C -0.267 4.267 19 Cl 0.036 6.964 20 H 0.071 0.929 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.129 0.871 29 H 0.053 0.947 30 H 0.154 0.846 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.366 -7.003 -3.850 9.626 hybrid contribution 0.524 0.992 0.326 1.169 sum -4.842 -6.010 -3.523 8.484 Atomic orbital electron populations 1.22180 0.98926 1.00499 0.99676 1.20392 0.91861 0.92231 0.89527 1.22023 1.00759 0.97737 0.99766 1.43744 1.63300 1.20070 1.01391 1.18761 0.94592 1.35319 0.87985 0.92739 1.25082 0.94641 0.99255 0.97901 1.69817 0.99088 1.51840 1.32076 0.86705 0.77853 0.78278 0.86843 1.20973 1.21582 1.20130 1.19876 0.91305 0.80646 1.01776 1.20366 1.01643 0.99332 0.89956 1.20043 0.99157 0.95712 0.99296 1.25360 1.06909 1.05397 0.98290 1.83963 1.49039 1.31246 1.03451 1.24950 1.06769 1.01714 0.93234 1.98406 1.95474 1.82167 1.20346 0.92947 0.94709 0.93839 0.93796 0.93305 0.95259 0.92278 0.93592 0.87062 0.94742 0.84649 0.82454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.18 37.16 0.34 -2.56 16 2 C 0.17 3.41 3.37 -67.93 -0.23 3.18 16 3 C -0.14 -2.87 9.13 37.16 0.34 -2.53 16 4 N -0.57 -13.24 2.32 -167.03 -0.39 -13.62 16 5 C -0.24 -6.04 6.37 -15.06 -0.10 -6.14 16 6 H 0.06 1.46 7.09 -52.49 -0.37 1.09 16 7 C 0.03 0.82 3.73 -17.43 -0.07 0.76 16 8 N -0.89 -24.17 11.33 55.49 0.63 -23.54 16 9 Si 0.87 21.20 27.78 -169.99 -4.72 16.47 16 10 H -0.28 -6.74 6.64 56.52 0.38 -6.36 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 C 0.19 4.35 5.15 -5.19 -0.03 4.33 16 14 C -0.10 -1.97 5.39 -106.19 -0.57 -2.55 16 15 C -0.11 -1.86 9.94 -41.20 -0.41 -2.27 16 16 C -0.22 -3.39 11.22 29.02 0.33 -3.06 16 17 S 0.06 1.05 23.34 -107.50 -2.51 -1.46 16 18 C -0.12 -2.50 7.07 29.07 0.21 -2.30 16 19 Cl 0.01 0.17 22.90 -51.86 -1.19 -1.02 16 20 H 0.05 1.05 7.28 -51.93 -0.38 0.67 16 21 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.04 0.85 7.77 -51.93 -0.40 0.45 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 1.27 7.51 -51.93 -0.39 0.88 16 27 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 28 H 0.11 2.86 5.40 -51.93 -0.28 2.58 16 29 H 0.03 0.74 7.81 -51.93 -0.41 0.33 16 30 H 0.14 2.01 8.06 -52.48 -0.42 1.58 16 31 H 0.16 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 278.94 15.07 4.20 4.20 Total: -1.00 -26.67 278.94 -8.09 -34.76 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -3.93 Total: -2.65 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -0.19 Total: -13.14 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.24 Total: -37.16 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.72 Total: 16.47 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.51 Total: -1.46 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -1.19 Total: -1.02 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -26.67 -8.09 -34.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687986111.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.998 kcal (2) G-P(sol) polarization free energy of solvation -26.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds