Wall clock time and date at job start Mon Mar 30 2020 06:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46869 * 2 1 4 4 N 1.46493 * 109.47191 * 119.99920 * 2 1 3 5 5 C 1.36942 * 120.00341 * 295.91680 * 4 2 1 6 6 H 1.07996 * 119.99537 * 41.57386 * 5 4 2 7 7 C 1.38813 * 119.99916 * 221.58359 * 5 4 2 8 8 N 1.31610 * 120.00328 * 14.46857 * 7 5 4 9 9 Si 1.86805 * 119.99595 * 194.47209 * 7 5 4 10 10 H 1.48501 * 109.47042 * 89.99732 * 9 7 5 11 11 H 1.48499 * 109.47043 * 209.99424 * 9 7 5 12 12 H 1.48500 * 109.47192 * 329.99798 * 9 7 5 13 13 C 1.46501 * 119.99973 * 115.91329 * 4 2 1 14 14 C 1.50698 * 109.46972 * 269.99829 * 13 4 2 15 15 C 1.38478 * 122.55554 * 104.74006 * 14 13 4 16 16 C 1.33340 * 114.93086 * 179.75924 * 15 14 13 17 17 S 1.75879 * 109.62217 * 0.47903 * 16 15 14 18 18 C 1.33495 * 122.56459 * 285.02168 * 14 13 4 19 19 Cl 1.73601 * 125.20499 * 359.97438 * 18 14 13 20 20 H 1.08994 * 109.47299 * 302.63723 * 1 2 3 21 21 H 1.08999 * 109.46712 * 62.63799 * 1 2 3 22 22 H 1.09001 * 109.46633 * 182.63368 * 1 2 3 23 23 H 1.09000 * 109.47525 * 240.00498 * 2 1 3 24 24 H 1.09005 * 109.46797 * 181.88989 * 3 2 1 25 25 H 1.09000 * 109.47202 * 301.89300 * 3 2 1 26 26 H 1.09005 * 109.47122 * 61.89744 * 3 2 1 27 27 H 0.96996 * 120.00162 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.47017 * 150.00237 * 13 4 2 29 29 H 1.08998 * 109.47203 * 30.00046 * 13 4 2 30 30 H 1.08003 * 122.53431 * 359.97157 * 15 14 13 31 31 H 1.08002 * 125.19109 * 180.22510 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7579 -0.1760 2.4382 6 1 0.7828 0.2316 2.6601 7 6 2.7474 -0.1782 3.4117 8 7 4.0001 -0.4026 3.0764 9 14 2.3008 0.1374 5.1980 10 1 1.9885 -1.1520 5.8653 11 1 3.4448 0.7869 5.8869 12 1 1.1142 1.0279 5.2617 13 6 2.7853 -1.9317 1.0636 14 6 1.8433 -3.1080 1.0766 15 6 1.5147 -3.8123 -0.0695 16 6 0.6718 -4.8284 0.1175 17 16 0.2344 -4.9277 1.8181 18 6 1.2578 -3.5472 2.1930 19 17 1.4738 -2.8613 3.7730 20 1 -0.3633 0.5542 0.8653 21 1 -0.3633 0.4723 -0.9127 22 1 -0.3632 -1.0266 0.0472 23 1 1.8934 -0.5137 -0.8900 24 1 3.1295 1.4427 -0.0339 25 1 1.6492 1.9661 -0.8725 26 1 1.7046 1.9465 0.9066 27 1 4.6915 -0.4044 3.7567 28 1 3.4847 -2.0172 1.8951 29 1 3.3376 -1.9190 0.1240 30 1 1.9138 -3.5599 -1.0408 31 1 0.3094 -5.4872 -0.6578 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687986111.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:07 Heat of formation + Delta-G solvation = 31.658400 kcal Electronic energy + Delta-G solvation = -15995.069304 eV Core-core repulsion = 13429.304371 eV Total energy + Delta-G solvation = -2565.764933 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.46570 -37.50462 -37.04450 -34.18119 -32.02469 -29.81482 -27.71588 -27.69492 -25.28200 -23.33394 -21.23412 -19.77704 -18.70582 -17.96337 -16.88149 -16.16598 -15.84751 -15.46597 -14.65426 -14.47718 -14.20207 -14.04553 -13.96604 -13.24612 -13.02500 -12.91078 -12.87463 -12.66265 -12.37432 -12.16424 -12.05461 -11.83927 -11.72632 -11.63262 -11.24868 -11.21591 -10.30144 -9.32203 -9.18840 -8.36695 -7.69959 -5.31961 0.11780 0.42594 1.07249 1.33591 1.39147 1.45661 1.85031 1.90532 2.53916 3.43597 3.82248 4.26417 4.38928 4.53631 4.63162 4.76957 4.83001 4.85098 4.99965 5.17359 5.21276 5.23800 5.25494 5.50576 5.65627 5.66435 5.73222 5.81084 5.93250 6.64329 7.32792 7.98858 8.52932 9.26430 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.018577 B = 0.011999 C = 0.008460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.847677 B = 2332.969770 C = 3308.885334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.159 3.841 3 C -0.135 4.135 4 N -0.579 5.579 5 C -0.222 4.222 6 H 0.039 0.961 7 C 0.003 3.997 8 N -0.909 5.909 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.276 1.276 13 C 0.195 3.805 14 C -0.103 4.103 15 C -0.129 4.129 16 C -0.195 4.195 17 S 0.101 5.899 18 C -0.160 4.160 19 Cl -0.023 7.023 20 H 0.032 0.968 21 H 0.066 0.934 22 H 0.036 0.964 23 H 0.061 0.939 24 H 0.029 0.971 25 H 0.064 0.936 26 H 0.034 0.966 27 H 0.247 0.753 28 H 0.079 0.921 29 H 0.040 0.960 30 H 0.159 0.841 31 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.102 -7.461 -7.089 11.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.053 3.947 3 C -0.194 4.194 4 N -0.298 5.298 5 C -0.353 4.353 6 H 0.056 0.944 7 C -0.195 4.195 8 N -0.554 5.554 9 Si 0.732 3.268 10 H -0.206 1.206 11 H -0.223 1.223 12 H -0.201 1.201 13 C 0.066 3.934 14 C -0.119 4.119 15 C -0.160 4.160 16 C -0.330 4.330 17 S 0.361 5.639 18 C -0.303 4.303 19 Cl 0.005 6.995 20 H 0.051 0.949 21 H 0.085 0.915 22 H 0.055 0.945 23 H 0.079 0.921 24 H 0.048 0.952 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.176 0.824 31 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -6.869 -8.305 -6.008 12.340 hybrid contribution 0.915 1.298 0.878 1.814 sum -5.954 -7.008 -5.131 10.530 Atomic orbital electron populations 1.22019 0.97408 1.00086 1.00399 1.20604 0.92935 0.92242 0.88944 1.21923 0.99518 0.97752 1.00157 1.43900 1.63391 1.20982 1.01566 1.18625 0.93492 1.34092 0.89043 0.94370 1.25331 0.94595 1.00038 0.99488 1.69917 0.99501 1.53906 1.32100 0.86243 0.77228 0.78148 0.85178 1.20628 1.22349 1.20125 1.19641 0.91480 0.81638 1.00621 1.20292 1.01062 0.99073 0.91449 1.20120 1.00481 0.96299 0.99073 1.25888 1.04502 1.04334 0.98244 1.83851 1.47155 1.28463 1.04415 1.25236 1.09079 1.03878 0.92151 1.98381 1.95836 1.83024 1.22218 0.94885 0.91492 0.94490 0.92121 0.95173 0.91744 0.94672 0.94351 0.90357 0.94119 0.82369 0.78115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 9.18 71.98 0.66 -4.32 16 2 C 0.16 6.24 3.37 44.99 0.15 6.39 16 3 C -0.13 -5.22 9.13 71.98 0.66 -4.56 16 4 N -0.58 -26.97 2.32 -682.35 -1.59 -28.56 16 5 C -0.22 -11.49 6.37 84.03 0.54 -10.96 16 6 H 0.04 2.10 7.09 -2.91 -0.02 2.08 16 7 C 0.00 0.16 3.73 84.86 0.32 0.48 16 8 N -0.91 -51.11 11.33 21.65 0.25 -50.86 16 9 Si 0.90 44.28 27.78 68.60 1.91 46.19 16 10 H -0.28 -13.43 6.64 99.48 0.66 -12.77 16 11 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 C 0.19 8.78 5.15 85.63 0.44 9.22 16 14 C -0.10 -4.02 5.39 -20.88 -0.11 -4.13 16 15 C -0.13 -3.92 9.94 21.22 0.21 -3.71 16 16 C -0.19 -4.97 11.22 66.71 0.75 -4.22 16 17 S 0.10 3.05 23.34 -56.49 -1.32 1.73 16 18 C -0.16 -6.37 7.07 66.74 0.47 -5.90 16 19 Cl -0.02 -1.03 22.90 -2.72 -0.06 -1.09 16 20 H 0.03 1.28 7.28 -2.39 -0.02 1.26 16 21 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.06 2.19 7.77 -2.39 -0.02 2.17 16 24 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.03 1.50 7.51 -2.38 -0.02 1.48 16 27 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 28 H 0.08 4.13 5.40 -2.39 -0.01 4.11 16 29 H 0.04 1.72 7.81 -2.39 -0.02 1.70 16 30 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 31 H 0.20 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -58.51 278.94 4.34 -54.17 By element: Atomic # 1 Polarization: -0.95 SS G_CDS: 1.07 Total: 0.13 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 4.08 Total: -21.70 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -1.34 Total: -79.42 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.91 Total: 46.19 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.32 Total: 1.73 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.06 Total: -1.09 kcal Total: -58.51 4.34 -54.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687986111.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.826 kcal (2) G-P(sol) polarization free energy of solvation -58.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds