Wall clock time and date at job start Mon Mar 30 2020 06:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46653 * 2 1 4 4 C 1.53000 * 109.47062 * 240.00206 * 2 1 3 5 5 C 1.50698 * 109.47145 * 174.99731 * 4 2 1 6 6 H 1.07998 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99963 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00319 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00198 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47159 * 89.99537 * 9 7 5 11 11 H 1.48496 * 109.47225 * 209.99642 * 9 7 5 12 12 H 1.48507 * 109.46819 * 329.99911 * 9 7 5 13 13 N 1.46897 * 109.47130 * 120.00170 * 2 1 3 14 14 C 1.46901 * 110.99881 * 274.99930 * 13 2 1 15 15 C 1.50700 * 109.46874 * 180.02562 * 14 13 2 16 16 C 1.33345 * 125.19301 * 90.00348 * 15 14 13 17 17 C 1.38475 * 114.93083 * 179.97438 * 16 15 14 18 18 C 1.33499 * 114.88514 * 359.97438 * 17 16 15 19 19 Cl 1.73594 * 125.21076 * 179.97438 * 18 17 16 20 20 S 1.75884 * 125.18461 * 269.95589 * 15 14 13 21 21 H 1.09003 * 109.46929 * 299.99503 * 1 2 3 22 22 H 1.09003 * 109.47539 * 60.00011 * 1 2 3 23 23 H 1.09006 * 109.47110 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46986 * 294.99953 * 4 2 1 25 25 H 1.09005 * 109.47107 * 54.99591 * 4 2 1 26 26 H 0.96992 * 120.00254 * 180.02562 * 8 7 5 27 27 H 1.00898 * 111.00039 * 151.04669 * 13 2 1 28 28 H 1.08996 * 109.47327 * 59.99931 * 14 13 2 29 29 H 1.09000 * 109.47220 * 300.00189 * 14 13 2 30 30 H 1.08001 * 122.53329 * 0.22409 * 16 15 14 31 31 H 1.08001 * 122.55447 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1934 -2.3579 8 7 5.5410 -1.1002 -2.4136 9 14 3.3015 -2.1086 -3.6955 10 1 2.9406 -1.1636 -4.7828 11 1 4.1599 -3.1892 -4.2435 12 1 2.0653 -2.7002 -3.1234 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3468 15 6 2.5885 -0.5216 3.5556 16 6 3.8699 -0.6375 3.9059 17 6 4.0958 -1.3696 5.0595 18 6 2.9958 -1.8476 5.6458 19 17 2.9683 -2.7975 7.0985 20 16 1.5788 -1.3688 4.7203 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.7516 -1.7715 -1.2056 25 1 1.6053 -0.2617 -2.1370 26 1 6.0253 -1.5069 -3.1490 27 1 2.9173 -1.1205 1.0287 28 1 1.0871 0.6163 2.5525 29 1 2.7588 1.0462 2.1182 30 1 4.6707 -0.1906 3.3355 31 1 5.0862 -1.5407 5.4546 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695787583.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:11 Heat of formation + Delta-G solvation = 14.654628 kcal Electronic energy + Delta-G solvation = -14614.486361 eV Core-core repulsion = 12047.984089 eV Total energy + Delta-G solvation = -2566.502272 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.20535 -36.94814 -36.29719 -32.92904 -31.64115 -28.60099 -27.88358 -25.13119 -23.02088 -22.17180 -19.54497 -19.31060 -17.45341 -16.84217 -15.69712 -15.14122 -14.79976 -14.33528 -13.63438 -13.38421 -13.33440 -12.90105 -12.63446 -12.30054 -11.89215 -11.85564 -11.59031 -11.41013 -11.25285 -10.97242 -10.74934 -10.64854 -10.47327 -9.79574 -9.54458 -9.26882 -8.60234 -8.52784 -8.46557 -7.82603 -6.10802 -4.09737 0.85411 1.14569 1.90500 2.24779 2.67751 3.28305 3.36599 3.41050 4.41233 4.72292 5.06948 5.27981 5.29661 5.39524 5.62266 5.76883 5.81283 6.00453 6.02227 6.12488 6.19806 6.36264 6.41783 6.64946 6.72976 7.09181 7.24025 7.70253 7.77532 8.10143 8.42853 8.90141 9.51944 11.02062 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.027470 B = 0.004631 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.051640 B = 6045.300859 C = 6567.165410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.096 3.904 3 H 0.037 0.963 4 C -0.017 4.017 5 C -0.526 4.526 6 H 0.069 0.931 7 C 0.070 3.930 8 N -0.901 5.901 9 Si 0.880 3.120 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.679 5.679 14 C 0.124 3.876 15 C -0.146 4.146 16 C -0.136 4.136 17 C -0.110 4.110 18 C -0.163 4.163 19 Cl -0.026 7.026 20 S 0.159 5.841 21 H 0.040 0.960 22 H 0.050 0.950 23 H 0.055 0.945 24 H 0.026 0.974 25 H 0.018 0.982 26 H 0.263 0.737 27 H 0.362 0.638 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.149 0.851 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.899 0.491 15.159 16.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.013 4.013 3 H 0.056 0.944 4 C -0.055 4.055 5 C -0.564 4.564 6 H 0.087 0.913 7 C -0.131 4.131 8 N -0.539 5.539 9 Si 0.708 3.292 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.314 5.314 14 C -0.007 4.007 15 C -0.264 4.264 16 C -0.166 4.166 17 C -0.143 4.143 18 C -0.306 4.306 19 Cl 0.002 6.998 20 S 0.421 5.579 21 H 0.059 0.941 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.036 0.964 26 H 0.073 0.927 27 H 0.184 0.816 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.167 0.833 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.916 -0.141 15.505 17.887 hybrid contribution 2.091 0.110 -0.987 2.315 sum -6.826 -0.031 14.518 16.043 Atomic orbital electron populations 1.21847 0.96497 1.01509 0.99871 1.21421 0.93306 0.96149 0.90451 0.94447 1.19770 0.97020 0.96322 0.92338 1.21060 0.89847 1.35460 1.09997 0.91277 1.24997 0.94680 0.95599 0.97874 1.69907 1.06612 1.45120 1.32280 0.86770 0.80341 0.79925 0.82213 1.20377 1.21425 1.18832 1.60666 1.35569 1.31442 1.03758 1.20446 1.00076 0.93008 0.87143 1.24648 0.96214 1.04388 1.01178 1.20050 0.96695 1.02337 0.97548 1.20157 0.98819 0.99221 0.96121 1.25217 0.99261 1.08637 0.97508 1.98343 1.98390 1.69965 1.33104 1.84314 1.06841 1.49802 1.16933 0.94123 0.93122 0.92540 0.95553 0.96366 0.92685 0.81575 0.90565 0.93109 0.83343 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.41 37.16 0.35 -1.89 16 2 C 0.10 1.83 2.59 -67.71 -0.18 1.66 16 3 H 0.04 0.73 7.80 -51.93 -0.40 0.33 16 4 C -0.02 -0.39 3.64 -27.88 -0.10 -0.49 16 5 C -0.53 -14.18 8.67 -34.44 -0.30 -14.48 16 6 H 0.07 1.98 7.73 -52.49 -0.41 1.58 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -26.98 13.96 55.43 0.77 -26.20 16 9 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 13 N -0.68 -12.32 6.30 -107.99 -0.68 -13.00 16 14 C 0.12 1.87 5.97 -4.98 -0.03 1.84 16 15 C -0.15 -2.07 6.02 -36.02 -0.22 -2.29 16 16 C -0.14 -1.86 10.05 -41.20 -0.41 -2.28 16 17 C -0.11 -1.40 10.13 -41.15 -0.42 -1.82 16 18 C -0.16 -2.08 7.10 29.07 0.21 -1.87 16 19 Cl -0.03 -0.30 29.29 -51.86 -1.52 -1.82 16 20 S 0.16 2.05 23.33 -107.50 -2.51 -0.45 16 21 H 0.04 0.58 7.45 -51.93 -0.39 0.19 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 25 H 0.02 0.42 7.57 -51.93 -0.39 0.02 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.36 7.40 7.20 -39.29 -0.28 7.12 16 28 H 0.08 1.05 7.44 -51.93 -0.39 0.67 16 29 H 0.05 0.77 8.06 -51.93 -0.42 0.35 16 30 H 0.15 1.96 8.06 -52.49 -0.42 1.54 16 31 H 0.15 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 291.30 15.07 4.39 4.39 Total: -1.00 -28.34 291.30 -9.32 -37.66 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -3.91 Total: 2.48 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -1.19 Total: -19.73 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.09 Total: -39.20 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.51 Total: -0.45 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.52 Total: -1.82 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.34 -9.32 -37.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787583.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.310 kcal (2) G-P(sol) polarization free energy of solvation -28.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds