Wall clock time and date at job start Mon Mar 30 2020 06:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46653 * 2 1 4 4 C 1.53000 * 109.47062 * 240.00206 * 2 1 3 5 5 C 1.50698 * 109.47145 * 174.99731 * 4 2 1 6 6 H 1.07998 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99963 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00319 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00198 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47159 * 89.99537 * 9 7 5 11 11 H 1.48496 * 109.47225 * 209.99642 * 9 7 5 12 12 H 1.48507 * 109.46819 * 329.99911 * 9 7 5 13 13 N 1.46897 * 109.47130 * 120.00170 * 2 1 3 14 14 C 1.46901 * 110.99881 * 274.99930 * 13 2 1 15 15 C 1.50700 * 109.46874 * 180.02562 * 14 13 2 16 16 C 1.33345 * 125.19301 * 90.00348 * 15 14 13 17 17 C 1.38475 * 114.93083 * 179.97438 * 16 15 14 18 18 C 1.33499 * 114.88514 * 359.97438 * 17 16 15 19 19 Cl 1.73594 * 125.21076 * 179.97438 * 18 17 16 20 20 S 1.75884 * 125.18461 * 269.95589 * 15 14 13 21 21 H 1.09003 * 109.46929 * 299.99503 * 1 2 3 22 22 H 1.09003 * 109.47539 * 60.00011 * 1 2 3 23 23 H 1.09006 * 109.47110 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46986 * 294.99953 * 4 2 1 25 25 H 1.09005 * 109.47107 * 54.99591 * 4 2 1 26 26 H 0.96992 * 120.00254 * 180.02562 * 8 7 5 27 27 H 1.00898 * 111.00039 * 151.04669 * 13 2 1 28 28 H 1.08996 * 109.47327 * 59.99931 * 14 13 2 29 29 H 1.09000 * 109.47220 * 300.00189 * 14 13 2 30 30 H 1.08001 * 122.53329 * 0.22409 * 16 15 14 31 31 H 1.08001 * 122.55447 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1934 -2.3579 8 7 5.5410 -1.1002 -2.4136 9 14 3.3015 -2.1086 -3.6955 10 1 2.9406 -1.1636 -4.7828 11 1 4.1599 -3.1892 -4.2435 12 1 2.0653 -2.7002 -3.1234 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3468 15 6 2.5885 -0.5216 3.5556 16 6 3.8699 -0.6375 3.9059 17 6 4.0958 -1.3696 5.0595 18 6 2.9958 -1.8476 5.6458 19 17 2.9683 -2.7975 7.0985 20 16 1.5788 -1.3688 4.7203 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.7516 -1.7715 -1.2056 25 1 1.6053 -0.2617 -2.1370 26 1 6.0253 -1.5069 -3.1490 27 1 2.9173 -1.1205 1.0287 28 1 1.0871 0.6163 2.5525 29 1 2.7588 1.0462 2.1182 30 1 4.6707 -0.1906 3.3355 31 1 5.0862 -1.5407 5.4546 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695787583.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:10 Heat of formation + Delta-G solvation = -2.037301 kcal Electronic energy + Delta-G solvation = -14615.210178 eV Core-core repulsion = 12047.984089 eV Total energy + Delta-G solvation = -2567.226088 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.32473 -38.18638 -37.45519 -34.84153 -33.17856 -30.07597 -29.40340 -26.34086 -24.61295 -23.54430 -21.10623 -20.38055 -18.95849 -18.53722 -16.76103 -16.60517 -16.35274 -16.06027 -14.85919 -14.68119 -14.51241 -14.34992 -14.03519 -13.63986 -13.57673 -13.43330 -12.91483 -12.65651 -12.50868 -12.37574 -12.12161 -12.05368 -11.71932 -11.67090 -11.28209 -11.21561 -10.74861 -9.60919 -9.49539 -9.23414 -8.27150 -6.29938 -0.20416 0.12851 0.85523 1.24457 1.37057 1.40071 1.51206 1.61954 2.38037 3.07372 3.45994 3.85602 4.15571 4.27695 4.35668 4.50094 4.61437 4.66380 4.71043 4.95379 5.03189 5.11392 5.14534 5.24272 5.34327 5.36780 5.51765 5.69174 6.23378 6.31268 6.51438 6.76237 7.34791 8.88698 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.027470 B = 0.004631 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.051640 B = 6045.300859 C = 6567.165410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.098 3.902 3 H 0.029 0.971 4 C -0.014 4.014 5 C -0.523 4.523 6 H 0.037 0.963 7 C 0.010 3.990 8 N -0.948 5.948 9 Si 0.945 3.055 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.249 1.249 13 N -0.681 5.681 14 C 0.128 3.872 15 C -0.165 4.165 16 C -0.140 4.140 17 C -0.116 4.116 18 C -0.167 4.167 19 Cl -0.012 7.012 20 S 0.178 5.822 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.022 0.978 25 H 0.024 0.976 26 H 0.264 0.736 27 H 0.345 0.655 28 H 0.093 0.907 29 H 0.045 0.955 30 H 0.146 0.854 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.734 0.070 15.613 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.012 4.012 3 H 0.047 0.953 4 C -0.051 4.051 5 C -0.561 4.561 6 H 0.055 0.945 7 C -0.187 4.187 8 N -0.589 5.589 9 Si 0.769 3.231 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.172 1.172 13 N -0.314 5.314 14 C -0.003 4.003 15 C -0.283 4.283 16 C -0.171 4.171 17 C -0.148 4.148 18 C -0.310 4.310 19 Cl 0.016 6.984 20 S 0.440 5.560 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.164 0.836 28 H 0.112 0.888 29 H 0.063 0.937 30 H 0.164 0.836 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.787 -0.549 15.978 19.286 hybrid contribution 2.710 0.268 -1.007 2.904 sum -8.077 -0.281 14.971 17.013 Atomic orbital electron populations 1.21764 0.93592 1.01976 1.01552 1.21371 0.95510 0.95020 0.89286 0.95329 1.19724 0.94158 0.96621 0.94645 1.21357 0.92081 1.33996 1.08672 0.94477 1.25891 0.95428 0.96839 1.00575 1.70052 1.08439 1.46940 1.33466 0.85736 0.79375 0.78675 0.79300 1.19401 1.21467 1.17233 1.60745 1.34327 1.32116 1.04228 1.20438 1.00983 0.92421 0.86417 1.24605 0.96816 1.05376 1.01535 1.20179 0.96653 1.02333 0.97944 1.20306 0.99778 0.98978 0.95757 1.25363 0.99262 1.08487 0.97937 1.98349 1.98350 1.69515 1.32182 1.84174 1.06378 1.49229 1.16194 0.92011 0.91963 0.92622 0.95919 0.95791 0.92686 0.83572 0.88848 0.93680 0.83627 0.81979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 9.41 71.98 0.68 -3.18 16 2 C 0.10 3.62 2.59 44.92 0.12 3.74 16 3 H 0.03 1.10 7.80 -2.39 -0.02 1.09 16 4 C -0.01 -0.62 3.64 29.85 0.11 -0.51 16 5 C -0.52 -28.62 8.67 25.60 0.22 -28.40 16 6 H 0.04 2.21 7.73 -2.91 -0.02 2.19 16 7 C 0.01 0.56 5.47 84.65 0.46 1.02 16 8 N -0.95 -58.09 13.96 21.45 0.30 -57.79 16 9 Si 0.94 43.69 27.47 68.60 1.88 45.58 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 13 N -0.68 -24.35 6.30 -495.58 -3.12 -27.47 16 14 C 0.13 3.76 5.97 85.56 0.51 4.27 16 15 C -0.16 -4.56 6.02 24.58 0.15 -4.41 16 16 C -0.14 -3.80 10.05 21.22 0.21 -3.58 16 17 C -0.12 -2.81 10.13 21.25 0.22 -2.59 16 18 C -0.17 -4.00 7.10 66.75 0.47 -3.53 16 19 Cl -0.01 -0.26 29.29 -2.72 -0.08 -0.34 16 20 S 0.18 4.32 23.33 -56.49 -1.32 3.00 16 21 H 0.06 1.56 7.45 -2.39 -0.02 1.54 16 22 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 24 H 0.02 1.04 7.20 -2.38 -0.02 1.02 16 25 H 0.02 1.05 7.57 -2.38 -0.02 1.03 16 26 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 27 H 0.34 14.33 7.20 -89.70 -0.65 13.68 16 28 H 0.09 2.40 7.44 -2.39 -0.02 2.38 16 29 H 0.05 1.37 8.06 -2.39 -0.02 1.35 16 30 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 31 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -60.21 291.30 1.25 -58.96 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.43 Total: 15.24 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 3.15 Total: -37.18 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -2.82 Total: -85.26 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.58 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.32 Total: 3.00 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.08 Total: -0.34 kcal Total: -60.21 1.25 -58.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787583.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.924 kcal (2) G-P(sol) polarization free energy of solvation -60.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds