Wall clock time and date at job start Mon Mar 30 2020 06:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47282 * 2 1 4 4 C 1.53005 * 109.47312 * 119.99984 * 2 1 3 5 5 C 1.50699 * 109.47178 * 185.00003 * 4 2 1 6 6 H 1.07993 * 120.00132 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99830 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99843 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00153 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46813 * 90.00383 * 9 7 5 11 11 H 1.48494 * 109.47504 * 210.00174 * 9 7 5 12 12 H 1.48501 * 109.47439 * 330.00615 * 9 7 5 13 13 N 1.46902 * 109.47279 * 239.99946 * 2 1 3 14 14 C 1.46903 * 111.00051 * 85.00056 * 13 2 1 15 15 C 1.50699 * 109.47239 * 179.97438 * 14 13 2 16 16 C 1.33347 * 125.18409 * 89.99775 * 15 14 13 17 17 C 1.38475 * 114.92849 * 180.02562 * 16 15 14 18 18 C 1.33503 * 114.88382 * 0.02562 * 17 16 15 19 19 Cl 1.73595 * 125.20870 * 179.97438 * 18 17 16 20 20 S 1.75877 * 125.19207 * 270.00049 * 15 14 13 21 21 H 1.09002 * 109.47179 * 300.00083 * 1 2 3 22 22 H 1.09002 * 109.47249 * 60.00279 * 1 2 3 23 23 H 1.09000 * 109.47282 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46873 * 305.00005 * 4 2 1 25 25 H 1.08999 * 109.46725 * 64.99644 * 4 2 1 26 26 H 0.97003 * 119.99662 * 179.97438 * 8 7 5 27 27 H 1.00900 * 110.99890 * 208.95290 * 13 2 1 28 28 H 1.09006 * 109.46924 * 59.99923 * 14 13 2 29 29 H 1.08997 * 109.46776 * 300.00235 * 14 13 2 30 30 H 1.07996 * 122.54060 * 0.02599 * 16 15 14 31 31 H 1.08005 * 122.55896 * 179.73668 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0789 -0.0862 0.5392 7 6 4.2303 -1.1926 2.3583 8 7 3.5763 -1.8369 3.3000 9 14 6.0920 -1.0615 2.4367 10 1 6.4708 0.1614 3.1894 11 1 6.6440 -2.2565 3.1239 12 1 6.6414 -0.9848 1.0592 13 7 2.0196 -0.6925 -1.1994 14 6 2.0825 0.2226 -2.3469 15 6 2.5886 -0.5215 -3.5557 16 6 1.8232 -1.1645 -4.4383 17 6 2.5123 -1.7781 -5.4707 18 6 3.8387 -1.6330 -5.4251 19 17 4.9576 -2.2891 -6.5788 20 16 4.2787 -0.6744 -4.0177 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6054 -0.2617 2.1370 25 1 1.7516 -1.7715 1.2056 26 1 4.0607 -2.2437 4.0355 27 1 2.9173 -1.1205 -1.0287 28 1 2.7589 1.0462 -2.1182 29 1 1.0871 0.6163 -2.5525 30 1 0.7472 -1.2038 -4.3542 31 1 2.0152 -2.3358 -6.2507 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695787586.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:13 Heat of formation + Delta-G solvation = 11.827145 kcal Electronic energy + Delta-G solvation = -14617.023098 eV Core-core repulsion = 12050.398217 eV Total energy + Delta-G solvation = -2566.624881 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.19279 -36.91901 -36.26209 -32.98100 -31.49909 -28.47995 -27.43241 -25.03069 -23.21872 -22.35888 -19.60372 -19.32236 -17.40167 -16.38561 -15.85797 -14.95668 -14.74914 -14.34495 -13.87296 -13.57897 -13.16392 -12.91568 -12.41209 -12.04738 -11.86326 -11.69355 -11.47805 -11.26048 -11.14748 -10.88413 -10.68734 -10.66324 -10.54243 -10.24789 -9.32266 -9.11758 -8.57244 -8.47762 -8.40996 -7.76921 -6.05469 -4.09082 0.83776 1.12723 1.87491 2.22271 2.65261 3.28345 3.35579 3.37826 4.41181 4.76242 5.04434 5.28742 5.33570 5.39097 5.59264 5.77390 5.93092 5.96409 6.13879 6.20327 6.23930 6.41171 6.46651 6.87533 6.88247 7.43105 7.59164 7.92076 7.96374 8.14678 8.32573 8.96670 9.55562 11.05307 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.019739 B = 0.005516 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.171992 B = 5075.253811 C = 6205.229975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.031 0.969 4 C 0.020 3.980 5 C -0.526 4.526 6 H 0.051 0.949 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.677 5.677 14 C 0.125 3.875 15 C -0.148 4.148 16 C -0.126 4.126 17 C -0.114 4.114 18 C -0.159 4.159 19 Cl -0.025 7.025 20 S 0.151 5.849 21 H 0.049 0.951 22 H 0.036 0.964 23 H 0.056 0.944 24 H 0.023 0.977 25 H 0.027 0.973 26 H 0.261 0.739 27 H 0.357 0.643 28 H 0.037 0.963 29 H 0.087 0.913 30 H 0.148 0.852 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.851 2.215 -16.922 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.049 0.951 4 C -0.017 4.017 5 C -0.564 4.564 6 H 0.069 0.931 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.311 5.311 14 C -0.007 4.007 15 C -0.267 4.267 16 C -0.157 4.157 17 C -0.147 4.147 18 C -0.303 4.303 19 Cl 0.003 6.997 20 S 0.413 5.587 21 H 0.068 0.932 22 H 0.055 0.945 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.178 0.822 28 H 0.055 0.945 29 H 0.105 0.895 30 H 0.165 0.835 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.956 2.317 -16.416 16.606 hybrid contribution 0.673 -0.098 -0.372 0.775 sum -0.283 2.219 -16.788 16.936 Atomic orbital electron populations 1.21799 0.96497 1.01468 0.99573 1.21666 0.93516 0.95956 0.91110 0.95071 1.19286 0.95454 0.96273 0.90685 1.21143 0.92175 1.34736 1.08376 0.93109 1.24973 0.98238 0.95079 0.95675 1.69959 1.35550 1.35431 1.11898 0.86661 0.85912 0.77601 0.78273 1.20701 1.21120 1.19798 1.60672 1.35085 1.31467 1.03914 1.20486 1.00028 0.92763 0.87387 1.24710 0.94935 1.05391 1.01654 1.19912 1.01530 0.99813 0.94396 1.20169 0.91486 1.02202 1.00861 1.25202 0.94496 1.10432 1.00160 1.98346 1.60407 1.84253 1.56664 1.84630 1.07105 1.49348 1.17588 0.93169 0.94467 0.92528 0.95876 0.95489 0.92898 0.82168 0.94469 0.89505 0.83450 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.41 37.15 0.35 -1.97 16 2 C 0.09 1.73 2.59 -67.71 -0.18 1.56 16 3 H 0.03 0.63 7.80 -51.93 -0.40 0.23 16 4 C 0.02 0.51 4.57 -27.88 -0.13 0.38 16 5 C -0.53 -14.21 8.12 -34.44 -0.28 -14.49 16 6 H 0.05 1.33 7.49 -52.49 -0.39 0.94 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 13 N -0.68 -12.58 6.30 -107.99 -0.68 -13.26 16 14 C 0.12 1.89 5.97 -4.97 -0.03 1.86 16 15 C -0.15 -2.10 6.02 -36.02 -0.22 -2.31 16 16 C -0.13 -1.59 10.05 -41.20 -0.41 -2.01 16 17 C -0.11 -1.37 10.13 -41.15 -0.42 -1.78 16 18 C -0.16 -2.04 7.10 29.08 0.21 -1.84 16 19 Cl -0.03 -0.29 29.29 -51.86 -1.52 -1.81 16 20 S 0.15 2.09 23.33 -107.50 -2.51 -0.41 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.36 7.40 7.20 -39.29 -0.28 7.11 16 28 H 0.04 0.57 8.06 -51.93 -0.42 0.15 16 29 H 0.09 1.19 7.44 -51.93 -0.39 0.80 16 30 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 294.91 15.07 4.44 4.44 Total: -1.00 -28.20 294.91 -9.69 -37.90 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -3.94 Total: 1.31 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -1.20 Total: -18.96 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.06 Total: -38.72 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.51 Total: -0.41 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.52 Total: -1.81 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.20 -9.69 -37.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787586.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.724 kcal (2) G-P(sol) polarization free energy of solvation -28.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds