Wall clock time and date at job start Mon Mar 30 2020 06:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47282 * 2 1 4 4 C 1.53005 * 109.47312 * 119.99984 * 2 1 3 5 5 C 1.50699 * 109.47178 * 185.00003 * 4 2 1 6 6 H 1.07993 * 120.00132 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99830 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99843 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00153 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46813 * 90.00383 * 9 7 5 11 11 H 1.48494 * 109.47504 * 210.00174 * 9 7 5 12 12 H 1.48501 * 109.47439 * 330.00615 * 9 7 5 13 13 N 1.46902 * 109.47279 * 239.99946 * 2 1 3 14 14 C 1.46903 * 111.00051 * 85.00056 * 13 2 1 15 15 C 1.50699 * 109.47239 * 179.97438 * 14 13 2 16 16 C 1.33347 * 125.18409 * 89.99775 * 15 14 13 17 17 C 1.38475 * 114.92849 * 180.02562 * 16 15 14 18 18 C 1.33503 * 114.88382 * 0.02562 * 17 16 15 19 19 Cl 1.73595 * 125.20870 * 179.97438 * 18 17 16 20 20 S 1.75877 * 125.19207 * 270.00049 * 15 14 13 21 21 H 1.09002 * 109.47179 * 300.00083 * 1 2 3 22 22 H 1.09002 * 109.47249 * 60.00279 * 1 2 3 23 23 H 1.09000 * 109.47282 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46873 * 305.00005 * 4 2 1 25 25 H 1.08999 * 109.46725 * 64.99644 * 4 2 1 26 26 H 0.97003 * 119.99662 * 179.97438 * 8 7 5 27 27 H 1.00900 * 110.99890 * 208.95290 * 13 2 1 28 28 H 1.09006 * 109.46924 * 59.99923 * 14 13 2 29 29 H 1.08997 * 109.46776 * 300.00235 * 14 13 2 30 30 H 1.07996 * 122.54060 * 0.02599 * 16 15 14 31 31 H 1.08005 * 122.55896 * 179.73668 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0789 -0.0862 0.5392 7 6 4.2303 -1.1926 2.3583 8 7 3.5763 -1.8369 3.3000 9 14 6.0920 -1.0615 2.4367 10 1 6.4708 0.1614 3.1894 11 1 6.6440 -2.2565 3.1239 12 1 6.6414 -0.9848 1.0592 13 7 2.0196 -0.6925 -1.1994 14 6 2.0825 0.2226 -2.3469 15 6 2.5886 -0.5215 -3.5557 16 6 1.8232 -1.1645 -4.4383 17 6 2.5123 -1.7781 -5.4707 18 6 3.8387 -1.6330 -5.4251 19 17 4.9576 -2.2891 -6.5788 20 16 4.2787 -0.6744 -4.0177 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6054 -0.2617 2.1370 25 1 1.7516 -1.7715 1.2056 26 1 4.0607 -2.2437 4.0355 27 1 2.9173 -1.1205 -1.0287 28 1 2.7589 1.0462 -2.1182 29 1 1.0871 0.6163 -2.5525 30 1 0.7472 -1.2038 -4.3542 31 1 2.0152 -2.3358 -6.2507 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695787586.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:13 Heat of formation + Delta-G solvation = -4.301419 kcal Electronic energy + Delta-G solvation = -14617.722485 eV Core-core repulsion = 12050.398217 eV Total energy + Delta-G solvation = -2567.324268 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.26863 -38.16974 -37.44685 -34.90996 -33.00666 -29.77025 -29.24797 -26.23709 -24.98556 -23.61164 -21.15562 -20.39848 -18.55197 -18.44482 -17.01217 -16.53289 -16.36969 -15.80676 -15.14227 -14.66489 -14.56253 -14.03889 -13.82003 -13.52577 -13.32711 -13.20468 -13.14003 -12.61732 -12.59797 -12.38247 -12.31842 -12.16109 -11.84877 -11.65162 -11.26498 -11.01365 -10.57732 -9.61888 -9.51386 -9.21822 -8.19791 -6.29944 -0.18021 0.12131 0.86427 1.23660 1.38668 1.39797 1.49827 1.67776 2.39564 3.12412 3.49398 3.83522 4.22666 4.31893 4.39786 4.59707 4.61887 4.69861 4.74429 4.97731 5.04722 5.20801 5.23617 5.37212 5.42245 5.50203 5.54192 5.84626 6.19853 6.34989 6.52923 6.85409 7.38937 8.91693 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.019739 B = 0.005516 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.171992 B = 5075.253811 C = 6205.229975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.095 3.905 3 H 0.030 0.970 4 C 0.026 3.974 5 C -0.534 4.534 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.954 3.046 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.264 1.264 13 N -0.679 5.679 14 C 0.129 3.871 15 C -0.166 4.166 16 C -0.115 4.115 17 C -0.111 4.111 18 C -0.162 4.162 19 Cl -0.015 7.015 20 S 0.117 5.883 21 H 0.052 0.948 22 H 0.067 0.933 23 H 0.049 0.951 24 H -0.003 1.003 25 H -0.003 1.003 26 H 0.263 0.737 27 H 0.342 0.658 28 H 0.033 0.967 29 H 0.108 0.892 30 H 0.168 0.832 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.954 2.556 -18.736 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.015 4.015 3 H 0.048 0.952 4 C -0.011 4.011 5 C -0.572 4.572 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.779 3.221 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.188 1.188 13 N -0.312 5.312 14 C -0.002 4.002 15 C -0.284 4.284 16 C -0.146 4.146 17 C -0.143 4.143 18 C -0.306 4.306 19 Cl 0.013 6.987 20 S 0.379 5.621 21 H 0.071 0.929 22 H 0.086 0.914 23 H 0.068 0.932 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.072 0.928 27 H 0.161 0.839 28 H 0.051 0.949 29 H 0.126 0.874 30 H 0.185 0.815 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.068 2.675 -18.251 18.477 hybrid contribution 0.677 -0.229 0.123 0.725 sum -0.392 2.446 -18.128 18.296 Atomic orbital electron populations 1.21712 0.93997 1.01572 1.01247 1.21476 0.95456 0.94933 0.89613 0.95239 1.19150 0.94720 0.94836 0.92407 1.21505 0.93361 1.34100 1.08207 0.92608 1.25837 1.03047 0.94838 0.95424 1.70087 1.37457 1.36656 1.12686 0.85613 0.80199 0.77650 0.78642 1.19992 1.20947 1.18786 1.60710 1.34047 1.32229 1.04208 1.20496 1.01201 0.92069 0.86425 1.24596 0.94883 1.06915 1.02030 1.20211 1.02491 0.98245 0.93630 1.20464 0.91109 1.01673 1.01097 1.25304 0.95095 1.10282 0.99891 1.98351 1.60219 1.84010 1.56075 1.84705 1.07952 1.50443 1.18959 0.92867 0.91419 0.93195 0.98422 0.98417 0.92844 0.83934 0.94875 0.87435 0.81461 0.81117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 9.41 71.98 0.68 -3.49 16 2 C 0.09 3.74 2.59 44.91 0.12 3.86 16 3 H 0.03 1.18 7.80 -2.39 -0.02 1.16 16 4 C 0.03 1.34 4.57 29.85 0.14 1.48 16 5 C -0.53 -29.20 8.12 25.60 0.21 -29.00 16 6 H 0.06 2.93 7.49 -2.91 -0.02 2.91 16 7 C 0.01 0.39 5.46 84.65 0.46 0.85 16 8 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 9 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 13 N -0.68 -24.71 6.30 -495.56 -3.12 -27.84 16 14 C 0.13 3.68 5.97 85.56 0.51 4.19 16 15 C -0.17 -4.40 6.02 24.58 0.15 -4.26 16 16 C -0.12 -2.59 10.05 21.22 0.21 -2.38 16 17 C -0.11 -2.34 10.13 21.25 0.22 -2.12 16 18 C -0.16 -3.86 7.10 66.75 0.47 -3.38 16 19 Cl -0.01 -0.32 29.29 -2.72 -0.08 -0.40 16 20 S 0.12 3.15 23.33 -56.49 -1.32 1.83 16 21 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.07 1.80 7.45 -2.39 -0.02 1.78 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 25 H 0.00 -0.15 8.14 -2.39 -0.02 -0.16 16 26 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 27 H 0.34 14.19 7.20 -89.69 -0.65 13.54 16 28 H 0.03 0.98 8.06 -2.38 -0.02 0.96 16 29 H 0.11 2.61 7.44 -2.39 -0.02 2.60 16 30 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 31 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -60.59 294.91 1.44 -59.15 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.48 Total: 11.18 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 3.16 Total: -34.23 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -2.84 Total: -83.37 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.32 Total: 1.83 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.40 kcal Total: -60.59 1.44 -59.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787586.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.846 kcal (2) G-P(sol) polarization free energy of solvation -60.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds