Wall clock time and date at job start Mon Mar 30 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 H 1.07991 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00104 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00175 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47336 * 59.99992 * 9 7 5 11 11 H 1.48497 * 109.47563 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46893 * 300.00113 * 9 7 5 13 13 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 14 14 C 1.35051 * 126.03416 * 34.71887 * 13 2 1 15 15 C 1.35381 * 107.72698 * 179.87370 * 14 13 2 16 16 Cl 1.73593 * 126.04356 * 180.12754 * 15 14 13 17 17 C 1.39930 * 107.90431 * 0.38572 * 15 14 13 18 18 N 1.48025 * 125.88501 * 179.75733 * 17 15 14 19 19 O 1.21805 * 119.99409 * 179.97438 * 18 17 15 20 20 O 1.21789 * 120.00654 * 359.97438 * 18 17 15 21 21 N 1.30845 * 108.21781 * 359.76118 * 17 15 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 26 26 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 27 27 H 0.97004 * 120.00016 * 180.02562 * 8 7 5 28 28 H 1.07995 * 126.13315 * 359.97438 * 14 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6748 -1.5198 -3.8512 9 14 1.4989 0.5628 -5.2496 10 1 2.0920 1.9227 -5.1872 11 1 1.9928 -0.1379 -6.4622 12 1 0.0190 0.6704 -5.3090 13 7 2.0183 -0.6905 1.1962 14 6 1.4368 -1.7533 1.7931 15 6 2.1963 -2.0928 2.8611 16 17 1.8848 -3.3980 3.9624 17 6 3.2735 -1.2019 2.9236 18 7 4.3475 -1.2092 3.9422 19 8 5.2382 -0.3797 3.8939 20 8 4.3407 -2.0444 4.8286 21 7 3.1676 -0.3614 1.9264 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 3.1263 -0.7994 -1.2055 26 1 1.6054 -1.7198 -1.2951 27 1 2.9221 -1.8428 -4.7318 28 1 0.5297 -2.2451 1.4745 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695809493.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:19 Heat of formation + Delta-G solvation = 51.020075 kcal Electronic energy + Delta-G solvation = -16821.733946 eV Core-core repulsion = 13710.515384 eV Total energy + Delta-G solvation = -3111.218562 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.68263 -42.73354 -38.00437 -37.81437 -37.26332 -34.71180 -32.41881 -31.48189 -29.24425 -28.07510 -25.83896 -23.90937 -22.94088 -21.59291 -19.92838 -19.82735 -19.05947 -18.88286 -17.74820 -16.93895 -16.33718 -15.91976 -15.31659 -15.18857 -14.42864 -14.04471 -13.36859 -13.21879 -13.10637 -12.92747 -12.90823 -12.79710 -12.71369 -12.48703 -12.42913 -12.11451 -12.01721 -11.84739 -11.46529 -11.10920 -10.62840 -10.02869 -8.27260 -6.39364 -1.23397 -0.51241 0.26502 0.61210 0.86885 1.37979 1.44569 1.46156 1.52913 2.38607 2.81529 3.09485 3.46797 3.68353 3.93302 3.99647 4.04269 4.26240 4.77604 4.87225 4.95301 5.14567 5.25107 5.27298 5.40589 5.64775 5.71593 6.02755 6.37711 6.74623 7.31559 8.84567 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.031673 B = 0.004902 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.812396 B = 5710.759025 C = 6030.268586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.154 3.846 3 H 0.104 0.896 4 C 0.025 3.975 5 C -0.533 4.533 6 H 0.081 0.919 7 C 0.006 3.994 8 N -0.932 5.932 9 Si 0.965 3.035 10 H -0.270 1.270 11 H -0.292 1.292 12 H -0.257 1.257 13 N -0.294 5.294 14 C 0.108 3.892 15 C -0.153 4.153 16 Cl 0.014 6.986 17 C 0.104 3.896 18 N 0.058 4.942 19 O -0.173 6.173 20 O -0.098 6.098 21 N -0.240 5.240 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.080 0.920 25 H -0.017 1.017 26 H 0.016 0.984 27 H 0.264 0.736 28 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 -0.961 11.155 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.057 3.943 3 H 0.122 0.878 4 C -0.013 4.013 5 C -0.571 4.571 6 H 0.099 0.901 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.790 3.210 10 H -0.195 1.195 11 H -0.218 1.218 12 H -0.182 1.182 13 N -0.081 5.081 14 C -0.040 4.040 15 C -0.194 4.194 16 Cl 0.043 6.957 17 C -0.138 4.138 18 N 0.583 4.417 19 O -0.381 6.381 20 O -0.324 6.324 21 N -0.073 5.073 22 H 0.099 0.901 23 H 0.116 0.884 24 H 0.099 0.901 25 H 0.001 0.999 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -7.486 -0.053 9.962 12.461 hybrid contribution 0.453 -0.538 -0.272 0.754 sum -7.033 -0.591 9.690 11.988 Atomic orbital electron populations 1.22145 0.88668 1.04788 1.04644 1.22277 0.97499 0.96647 0.77919 0.87839 1.19371 0.94824 0.96084 0.90997 1.21374 1.36000 1.09271 0.90482 0.90058 1.25912 0.94744 0.95838 1.02797 1.70090 1.39379 1.22812 1.24812 0.85491 0.79418 0.78442 0.77698 1.19511 1.21821 1.18173 1.49662 1.14667 1.22842 1.20914 1.23181 1.00544 0.89565 0.90750 1.20394 0.97845 0.99855 1.01324 1.98378 1.94892 1.43203 1.59271 1.22600 0.93784 1.01680 0.95765 1.42225 0.99878 0.99789 0.99809 1.94613 1.28514 1.34030 1.80905 1.94547 1.80934 1.31534 1.25382 1.77426 1.04784 1.20951 1.04149 0.90119 0.88361 0.90074 0.99864 0.96606 0.92713 0.73850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.64 71.98 0.62 -2.78 15 2 C 0.15 5.05 3.35 44.99 0.15 5.20 15 3 H 0.10 3.48 8.14 -2.39 -0.02 3.46 15 4 C 0.03 1.13 4.77 29.85 0.14 1.28 15 5 C -0.53 -25.50 8.41 25.60 0.22 -25.28 15 6 H 0.08 3.52 7.06 -2.92 -0.02 3.50 15 7 C 0.01 0.31 5.46 84.66 0.46 0.78 15 8 N -0.93 -52.39 13.29 21.45 0.28 -52.10 15 9 Si 0.96 39.81 29.54 68.60 2.03 41.83 15 10 H -0.27 -10.87 7.11 99.48 0.71 -10.16 15 11 H -0.29 -12.29 7.11 99.48 0.71 -11.59 15 12 H -0.26 -9.85 7.11 99.48 0.71 -9.15 15 13 N -0.29 -9.39 3.53 -327.38 -1.16 -10.55 15 14 C 0.11 2.75 10.57 83.54 0.88 3.63 15 15 C -0.15 -4.34 6.63 22.02 0.15 -4.19 15 16 Cl 0.01 0.33 27.87 -2.72 -0.08 0.26 15 17 C 0.10 3.59 8.15 130.34 1.06 4.65 15 18 N 0.06 2.04 4.45 -49.40 -0.22 1.82 15 19 O -0.17 -6.46 19.23 18.88 0.36 -6.10 15 20 O -0.10 -3.16 17.75 18.90 0.34 -2.82 15 21 N -0.24 -8.92 12.54 -49.41 -0.62 -9.54 15 22 H 0.08 1.64 7.15 -2.39 -0.02 1.62 15 23 H 0.10 2.45 6.95 -2.39 -0.02 2.44 15 24 H 0.08 1.48 8.14 -2.38 -0.02 1.46 15 25 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 15 26 H 0.02 0.73 8.14 -2.39 -0.02 0.71 15 27 H 0.26 14.20 8.31 -92.71 -0.77 13.43 15 28 H 0.25 3.91 7.26 -2.91 -0.02 3.89 15 Total: -1.00 -61.06 274.80 5.82 -55.24 By element: Atomic # 1 Polarization: -2.53 SS G_CDS: 1.20 Total: -1.33 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 3.68 Total: -16.71 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: -1.71 Total: -70.37 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.70 Total: -8.92 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.83 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -0.08 Total: 0.26 kcal Total: -61.06 5.82 -55.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809493.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.264 kcal (2) G-P(sol) polarization free energy of solvation -61.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds