Wall clock time and date at job start Mon Mar 30 2020 07:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.46864 * 2 1 4 4 C 1.50702 * 109.47047 * 119.99788 * 2 1 3 5 5 H 1.08000 * 119.99795 * 120.00338 * 4 2 1 6 6 C 1.37875 * 120.00187 * 300.00006 * 4 2 1 7 7 N 1.31516 * 119.99903 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99983 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.46931 * 90.00057 * 8 6 4 10 10 H 1.48493 * 109.47391 * 210.00008 * 8 6 4 11 11 H 1.48501 * 109.47122 * 330.00636 * 8 6 4 12 12 N 1.46896 * 109.46855 * 239.99707 * 2 1 3 13 13 C 1.46900 * 110.99820 * 178.36536 * 12 2 1 14 14 C 1.38601 * 110.99985 * 54.41469 * 12 2 1 15 15 N 1.32957 * 120.51911 * 57.90219 * 14 12 2 16 16 C 1.32000 * 120.66875 * 179.71238 * 15 14 12 17 17 F 1.35098 * 119.10672 * 180.26319 * 16 15 14 18 18 N 1.32024 * 121.78949 * 0.57613 * 16 15 14 19 19 C 1.32559 * 120.98719 * 359.71222 * 18 16 15 20 20 C 1.38192 * 119.21545 * 359.97438 * 19 18 16 21 21 Cl 1.73603 * 120.81183 * 180.02562 * 20 19 18 22 22 H 1.09004 * 109.47071 * 294.24321 * 1 2 3 23 23 H 1.09001 * 109.47413 * 54.23939 * 1 2 3 24 24 H 1.09007 * 109.47297 * 174.24523 * 1 2 3 25 25 H 0.97000 * 119.99516 * 179.97438 * 7 6 4 26 26 H 1.09006 * 109.47191 * 62.39095 * 13 12 2 27 27 H 1.09003 * 109.47395 * 302.38715 * 13 12 2 28 28 H 1.09000 * 109.47333 * 182.39122 * 13 12 2 29 29 H 1.08003 * 120.39192 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1381 -0.8590 3.5566 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9955 3.9070 11 1 0.8491 2.1773 1.4922 12 7 2.0196 -0.6925 -1.1994 13 6 3.4876 -0.6784 -1.2531 14 6 1.4752 -0.1409 -2.3485 15 7 1.6450 1.1486 -2.6242 16 6 1.1326 1.6758 -3.7206 17 9 1.3290 2.9885 -3.9723 18 7 0.4283 0.9565 -4.5747 19 6 0.2123 -0.3343 -4.3643 20 6 0.7352 -0.9301 -3.2324 21 17 0.4783 -2.6176 -2.9163 22 1 -0.3633 0.4220 0.9371 23 1 -0.3634 0.6006 -0.8339 24 1 -0.3634 -1.0225 -0.1030 25 1 1.9040 -0.5273 4.4375 26 1 3.8878 -1.2166 -0.3938 27 1 3.8420 0.3523 -1.2336 28 1 3.8222 -1.1603 -2.1717 29 1 -0.3657 -0.9136 -5.0693 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697106859.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:42 Heat of formation + Delta-G solvation = 33.056509 kcal Electronic energy + Delta-G solvation = -17560.227586 eV Core-core repulsion = 14460.602855 eV Total energy + Delta-G solvation = -3099.624731 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.058 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.20004 -41.20435 -37.62330 -36.56159 -33.73371 -32.64356 -31.11011 -30.25092 -26.36072 -24.78965 -24.37504 -23.30359 -20.53957 -18.66104 -17.81700 -16.83525 -16.71354 -16.44272 -15.46092 -15.16729 -14.65135 -14.12724 -13.93635 -13.66851 -13.27680 -12.71239 -12.37641 -12.01538 -11.90489 -11.79685 -11.31296 -11.17763 -10.92111 -10.81700 -10.64723 -10.31735 -9.71810 -9.49537 -9.29165 -9.03705 -8.69022 -8.14200 -6.18798 -4.19366 0.51943 0.73593 2.01071 2.94390 3.18777 3.31770 3.32521 3.34111 3.64013 3.97574 4.29551 4.73110 4.83791 5.12921 5.18259 5.69304 6.01105 6.03091 6.09033 6.22530 6.32799 6.50350 6.59635 6.65023 6.94367 7.29498 7.46138 7.59761 7.70197 8.43105 8.85652 9.40888 10.93208 Molecular weight = 259.06amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.008360 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.841522 B = 3348.515934 C = 3988.737413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.189 3.811 3 H 0.023 0.977 4 C -0.509 4.509 5 H 0.088 0.912 6 C 0.077 3.923 7 N -0.892 5.892 8 Si 0.878 3.122 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.266 1.266 12 N -0.473 5.473 13 C 0.042 3.958 14 C 0.413 3.587 15 N -0.552 5.552 16 C 0.504 3.496 17 F -0.080 7.080 18 N -0.539 5.539 19 C 0.189 3.811 20 C -0.140 4.140 21 Cl -0.009 7.009 22 H 0.053 0.947 23 H 0.016 0.984 24 H 0.066 0.934 25 H 0.266 0.734 26 H 0.099 0.901 27 H 0.037 0.963 28 H 0.051 0.949 29 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.921 -0.205 -14.472 14.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.084 3.916 3 H 0.040 0.960 4 C -0.547 4.547 5 H 0.106 0.894 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.708 3.292 9 H -0.204 1.204 10 H -0.220 1.220 11 H -0.191 1.191 12 N -0.197 5.197 13 C -0.104 4.104 14 C 0.175 3.825 15 N -0.277 5.277 16 C 0.223 3.777 17 F -0.060 7.060 18 N -0.260 5.260 19 C 0.025 3.975 20 C -0.174 4.174 21 Cl 0.019 6.981 22 H 0.072 0.928 23 H 0.035 0.965 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.912 0.180 -14.358 14.651 hybrid contribution -0.583 1.027 0.363 1.236 sum -3.495 1.207 -13.995 14.475 Atomic orbital electron populations 1.22263 0.98389 1.01263 0.98940 1.19911 0.91473 0.93656 0.86586 0.95982 1.20785 1.32715 1.13962 0.87286 0.89426 1.24830 0.95616 0.96429 0.95684 1.69850 1.45097 1.39989 0.97953 0.86998 0.80813 0.83967 0.77419 1.20377 1.22042 1.19143 1.60532 1.09383 1.50790 0.98952 1.22301 0.84143 1.01215 1.02723 1.20341 0.87245 0.83931 0.90940 1.68333 1.24836 1.15329 1.19232 1.18966 0.90789 0.80931 0.87020 1.91719 1.92302 1.28873 1.93075 1.67882 1.18404 1.07634 1.32103 1.22948 0.92857 0.88328 0.93388 1.22590 1.05268 0.90663 0.98836 1.98395 1.94911 1.09350 1.95394 0.92830 0.96463 0.91543 0.92345 0.88267 0.94406 0.92983 0.79463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.32 37.16 0.31 -3.01 15 2 C 0.19 4.36 1.45 -68.86 -0.10 4.26 15 3 H 0.02 0.56 7.04 -51.93 -0.37 0.19 15 4 C -0.51 -13.50 8.55 -34.44 -0.29 -13.79 15 5 H 0.09 2.48 7.03 -52.49 -0.37 2.11 15 6 C 0.08 2.14 5.45 -17.82 -0.10 2.04 15 7 N -0.89 -26.10 13.96 55.43 0.77 -25.33 15 8 Si 0.88 21.45 24.42 -169.99 -4.15 17.30 15 9 H -0.28 -6.59 6.82 56.52 0.39 -6.20 15 10 H -0.29 -7.16 7.11 56.52 0.40 -6.75 15 11 H -0.27 -6.43 6.53 56.52 0.37 -6.06 15 12 N -0.47 -9.38 4.11 -174.55 -0.72 -10.10 15 13 C 0.04 0.77 9.14 60.06 0.55 1.32 15 14 C 0.41 7.39 3.77 -154.72 -0.58 6.80 15 15 N -0.55 -10.19 9.92 -14.14 -0.14 -10.33 15 16 C 0.50 8.33 9.46 -91.78 -0.87 7.46 15 17 F -0.08 -1.27 17.32 2.25 0.04 -1.23 15 18 N -0.54 -7.87 10.45 -15.00 -0.16 -8.03 15 19 C 0.19 2.35 11.11 -17.25 -0.19 2.16 15 20 C -0.14 -2.06 6.38 -39.05 -0.25 -2.31 15 21 Cl -0.01 -0.13 28.58 -51.86 -1.48 -1.61 15 22 H 0.05 1.23 3.22 -51.93 -0.17 1.07 15 23 H 0.02 0.34 7.32 -51.93 -0.38 -0.04 15 24 H 0.07 1.41 8.14 -51.93 -0.42 0.99 15 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 26 H 0.10 1.89 6.64 -51.93 -0.34 1.54 15 27 H 0.04 0.69 8.12 -51.93 -0.42 0.27 15 28 H 0.05 0.80 8.10 -51.93 -0.42 0.38 15 29 H 0.19 1.52 8.06 -52.48 -0.42 1.09 15 LS Contribution 264.81 15.07 3.99 3.99 Total: -1.00 -28.94 264.81 -5.87 -34.80 By element: Atomic # 1 Polarization: -1.89 SS G_CDS: -2.50 Total: -4.39 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.53 Total: 4.93 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.24 Total: -53.79 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.15 Total: 17.30 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.48 Total: -1.61 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.94 -5.87 -34.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697106859.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.860 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds