Wall clock time and date at job start Mon Mar 30 2020 07:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47532 * 2 1 4 4 C 1.50701 * 109.47134 * 240.00032 * 2 1 3 5 5 H 1.08003 * 120.00282 * 245.34172 * 4 2 1 6 6 C 1.37876 * 119.99928 * 65.33608 * 4 2 1 7 7 N 1.31520 * 119.99683 * 5.18637 * 6 4 2 8 8 Si 1.86800 * 120.00266 * 185.18226 * 6 4 2 9 9 H 1.48506 * 109.47016 * 94.99994 * 8 6 4 10 10 H 1.48499 * 109.47400 * 215.00124 * 8 6 4 11 11 H 1.48496 * 109.46878 * 335.00021 * 8 6 4 12 12 N 1.46901 * 109.47148 * 120.00460 * 2 1 3 13 13 C 1.46895 * 111.00355 * 58.95047 * 12 2 1 14 14 C 1.38599 * 110.99921 * 294.99776 * 12 2 1 15 15 N 1.32950 * 120.52156 * 88.93891 * 14 12 2 16 16 C 1.32005 * 120.67420 * 179.97438 * 15 14 12 17 17 F 1.35096 * 119.10475 * 180.27895 * 16 15 14 18 18 N 1.32024 * 121.78678 * 359.97438 * 16 15 14 19 19 C 1.32556 * 120.98587 * 0.02562 * 18 16 15 20 20 C 1.38180 * 119.21886 * 359.97438 * 19 18 16 21 21 Cl 1.73602 * 120.81425 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.47040 * 54.91628 * 1 2 3 23 23 H 1.08997 * 109.47036 * 174.92491 * 1 2 3 24 24 H 1.09006 * 109.46545 * 294.92064 * 1 2 3 25 25 H 0.97003 * 119.99716 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.47034 * 300.95219 * 13 12 2 27 27 H 1.08995 * 109.46977 * 60.94797 * 13 12 2 28 28 H 1.08995 * 109.47469 * 180.94927 * 13 12 2 29 29 H 1.08006 * 120.38629 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5803 -1.6361 -1.1338 6 6 1.7924 -0.1787 -2.4797 7 7 1.2155 0.9977 -2.5939 8 14 2.2866 -1.1290 -4.0101 9 1 1.1230 -1.9065 -4.5073 10 1 2.7323 -0.1788 -5.0606 11 1 3.3972 -2.0574 -3.6790 12 7 2.0197 -0.6926 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6697 -0.0023 2.3492 15 7 0.5111 -0.2433 2.9551 16 6 0.1750 0.4119 4.0506 17 9 -1.0075 0.1377 4.6436 18 7 0.9657 1.3238 4.5858 19 6 2.1364 1.6182 4.0381 20 6 2.5294 0.9569 2.8903 21 17 4.0536 1.3103 2.1380 22 1 -0.3633 0.5907 -0.8409 23 1 -0.3633 -1.0236 -0.0909 24 1 -0.3632 0.4331 0.9321 25 1 1.0470 1.3720 -3.4728 26 1 0.4383 -2.0748 1.2469 27 1 1.8901 -2.6197 0.3732 28 1 1.8918 -2.5606 2.1521 29 1 2.7758 2.3655 4.4843 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697106868.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:44 Heat of formation + Delta-G solvation = 25.059116 kcal Electronic energy + Delta-G solvation = -17510.502282 eV Core-core repulsion = 14410.530758 eV Total energy + Delta-G solvation = -3099.971524 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.058 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.07076 -41.03123 -37.59056 -36.36767 -33.66829 -32.52682 -30.93300 -28.96879 -26.24039 -25.37645 -23.94266 -23.31576 -20.34577 -18.40114 -17.75224 -16.66062 -16.41552 -16.20061 -15.45668 -14.82981 -14.39690 -14.15492 -13.83620 -13.51815 -13.06133 -12.39481 -11.77402 -11.66174 -11.62547 -11.39319 -11.17134 -11.02711 -10.97556 -10.73424 -10.67279 -10.31372 -10.06401 -9.41545 -9.07032 -8.90801 -8.54279 -7.90045 -6.18429 -4.21709 0.71408 0.94935 2.21096 3.10356 3.23740 3.31309 3.34055 3.52189 3.84112 4.15552 4.33458 4.92154 5.05720 5.18261 5.36171 5.87958 6.19443 6.21208 6.46514 6.62784 6.66956 6.70706 6.81102 7.15191 7.30941 7.59037 7.66164 7.83497 7.97400 8.22721 8.80512 9.42627 10.91157 Molecular weight = 259.06amu Principal moments of inertia in cm(-1) A = 0.025885 B = 0.007252 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.442645 B = 3859.838877 C = 4414.112698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.220 3.780 3 H 0.054 0.946 4 C -0.508 4.508 5 H 0.068 0.932 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.472 5.472 13 C 0.034 3.966 14 C 0.414 3.586 15 N -0.554 5.554 16 C 0.505 3.495 17 F -0.083 7.083 18 N -0.548 5.548 19 C 0.191 3.809 20 C -0.151 4.151 21 Cl -0.012 7.012 22 H 0.077 0.923 23 H 0.041 0.959 24 H 0.017 0.983 25 H 0.264 0.736 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.260 0.076 10.161 10.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.118 3.882 3 H 0.072 0.928 4 C -0.546 4.546 5 H 0.087 0.913 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.192 5.192 13 C -0.113 4.113 14 C 0.175 3.825 15 N -0.280 5.280 16 C 0.224 3.776 17 F -0.062 7.062 18 N -0.271 5.271 19 C 0.027 3.973 20 C -0.186 4.186 21 Cl 0.017 6.983 22 H 0.096 0.904 23 H 0.060 0.940 24 H 0.036 0.964 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.943 -0.011 10.307 10.489 hybrid contribution -0.080 -0.266 -1.113 1.147 sum 1.863 -0.277 9.195 9.385 Atomic orbital electron populations 1.22384 0.99333 1.00836 0.99797 1.19566 0.90404 0.95151 0.83120 0.92800 1.20944 1.35991 1.08699 0.89009 0.91342 1.24903 0.95029 0.94781 0.99077 1.69941 1.42620 1.16023 1.24130 0.86437 0.78790 0.79669 0.82302 1.20677 1.21172 1.19631 1.60473 1.55041 1.03663 0.99989 1.22282 0.99801 0.87488 1.01735 1.20270 0.83677 0.87104 0.91455 1.68331 1.18454 1.31021 1.10243 1.18953 0.82909 0.89286 0.86495 1.91700 1.41279 1.91729 1.81521 1.67854 1.05981 1.18287 1.34940 1.22847 0.90234 0.94848 0.89324 1.22421 0.93594 1.03526 0.99018 1.98395 1.25430 1.93440 1.81070 0.90419 0.93955 0.96399 0.92667 0.93250 0.89416 0.93497 0.79733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 8.14 37.16 0.30 -3.55 15 2 C 0.22 5.22 2.19 -68.86 -0.15 5.07 15 3 H 0.05 1.42 8.09 -51.93 -0.42 1.00 15 4 C -0.51 -12.95 7.99 -34.44 -0.28 -13.23 15 5 H 0.07 1.72 6.55 -52.48 -0.34 1.38 15 6 C 0.06 1.69 5.29 -17.82 -0.09 1.60 15 7 N -0.89 -24.28 11.99 55.43 0.66 -23.61 15 8 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 15 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 11 H -0.27 -6.05 7.11 56.52 0.40 -5.64 15 12 N -0.47 -9.70 4.23 -174.56 -0.74 -10.44 15 13 C 0.03 0.64 8.38 60.06 0.50 1.15 15 14 C 0.41 7.85 4.98 -154.72 -0.77 7.08 15 15 N -0.55 -10.42 7.88 -14.14 -0.11 -10.53 15 16 C 0.50 8.72 9.46 -91.78 -0.87 7.85 15 17 F -0.08 -1.35 17.32 2.25 0.04 -1.31 15 18 N -0.55 -8.64 10.45 -15.00 -0.16 -8.80 15 19 C 0.19 2.66 11.10 -17.26 -0.19 2.47 15 20 C -0.15 -2.48 6.38 -39.05 -0.25 -2.73 15 21 Cl -0.01 -0.19 28.58 -51.86 -1.48 -1.67 15 22 H 0.08 1.99 6.84 -51.93 -0.36 1.63 15 23 H 0.04 0.96 6.65 -51.93 -0.35 0.62 15 24 H 0.02 0.39 6.24 -51.93 -0.32 0.07 15 25 H 0.26 6.89 8.31 -40.82 -0.34 6.55 15 26 H 0.05 0.95 6.00 -51.93 -0.31 0.64 15 27 H 0.09 1.66 6.46 -51.93 -0.34 1.33 15 28 H 0.05 0.79 8.11 -51.93 -0.42 0.37 15 29 H 0.19 1.79 8.06 -52.48 -0.42 1.37 15 LS Contribution 266.54 15.07 4.02 4.02 Total: -1.00 -27.04 266.54 -7.00 -34.03 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: -2.41 Total: -2.70 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.79 Total: 5.70 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.34 Total: -53.39 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.48 Total: -1.67 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.04 -7.00 -34.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697106868.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.092 kcal (2) G-P(sol) polarization free energy of solvation -27.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds