Wall clock time and date at job start Mon Mar 30 2020 07:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47532 * 2 1 4 4 C 1.50701 * 109.47134 * 240.00032 * 2 1 3 5 5 H 1.08003 * 120.00282 * 245.34172 * 4 2 1 6 6 C 1.37876 * 119.99928 * 65.33608 * 4 2 1 7 7 N 1.31520 * 119.99683 * 5.18637 * 6 4 2 8 8 Si 1.86800 * 120.00266 * 185.18226 * 6 4 2 9 9 H 1.48506 * 109.47016 * 94.99994 * 8 6 4 10 10 H 1.48499 * 109.47400 * 215.00124 * 8 6 4 11 11 H 1.48496 * 109.46878 * 335.00021 * 8 6 4 12 12 N 1.46901 * 109.47148 * 120.00460 * 2 1 3 13 13 C 1.46895 * 111.00355 * 58.95047 * 12 2 1 14 14 C 1.38599 * 110.99921 * 294.99776 * 12 2 1 15 15 N 1.32950 * 120.52156 * 88.93891 * 14 12 2 16 16 C 1.32005 * 120.67420 * 179.97438 * 15 14 12 17 17 F 1.35096 * 119.10475 * 180.27895 * 16 15 14 18 18 N 1.32024 * 121.78678 * 359.97438 * 16 15 14 19 19 C 1.32556 * 120.98587 * 0.02562 * 18 16 15 20 20 C 1.38180 * 119.21886 * 359.97438 * 19 18 16 21 21 Cl 1.73602 * 120.81425 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.47040 * 54.91628 * 1 2 3 23 23 H 1.08997 * 109.47036 * 174.92491 * 1 2 3 24 24 H 1.09006 * 109.46545 * 294.92064 * 1 2 3 25 25 H 0.97003 * 119.99716 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.47034 * 300.95219 * 13 12 2 27 27 H 1.08995 * 109.46977 * 60.94797 * 13 12 2 28 28 H 1.08995 * 109.47469 * 180.94927 * 13 12 2 29 29 H 1.08006 * 120.38629 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5803 -1.6361 -1.1338 6 6 1.7924 -0.1787 -2.4797 7 7 1.2155 0.9977 -2.5939 8 14 2.2866 -1.1290 -4.0101 9 1 1.1230 -1.9065 -4.5073 10 1 2.7323 -0.1788 -5.0606 11 1 3.3972 -2.0574 -3.6790 12 7 2.0197 -0.6926 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6697 -0.0023 2.3492 15 7 0.5111 -0.2433 2.9551 16 6 0.1750 0.4119 4.0506 17 9 -1.0075 0.1377 4.6436 18 7 0.9657 1.3238 4.5858 19 6 2.1364 1.6182 4.0381 20 6 2.5294 0.9569 2.8903 21 17 4.0536 1.3103 2.1380 22 1 -0.3633 0.5907 -0.8409 23 1 -0.3633 -1.0236 -0.0909 24 1 -0.3632 0.4331 0.9321 25 1 1.0470 1.3720 -3.4728 26 1 0.4383 -2.0748 1.2469 27 1 1.8901 -2.6197 0.3732 28 1 1.8918 -2.5606 2.1521 29 1 2.7758 2.3655 4.4843 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697106868.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:44 Heat of formation + Delta-G solvation = 9.450784 kcal Electronic energy + Delta-G solvation = -17511.179110 eV Core-core repulsion = 14410.530758 eV Total energy + Delta-G solvation = -3100.648352 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.058 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.38184 -42.39984 -39.15897 -37.65040 -35.32228 -34.15783 -32.35984 -30.74054 -27.71863 -27.32147 -25.28420 -24.84927 -22.05518 -19.73336 -19.16526 -18.38113 -17.90148 -17.61311 -17.08551 -16.42051 -15.83395 -15.72037 -15.13168 -14.99774 -14.68314 -14.19095 -13.41396 -13.21150 -13.07826 -12.92937 -12.87436 -12.73354 -12.55200 -12.31441 -12.18936 -12.16700 -11.78667 -11.14893 -10.55974 -10.53767 -10.30251 -9.49342 -8.17004 -6.25717 -0.62059 -0.36076 0.92338 1.45432 1.47492 1.57204 1.78577 2.17977 2.39108 2.52468 2.90237 3.16992 3.56760 3.72101 4.16752 4.42343 4.61778 4.66902 4.76088 4.88333 4.92599 5.06437 5.35965 5.37127 5.50150 5.66980 5.92011 6.07451 6.41321 6.45833 6.82145 7.42153 8.92553 Molecular weight = 259.06amu Principal moments of inertia in cm(-1) A = 0.025885 B = 0.007252 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.442645 B = 3859.838877 C = 4414.112698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.025 0.975 4 C -0.516 4.516 5 H 0.069 0.931 6 C 0.019 3.981 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.478 5.478 13 C 0.040 3.960 14 C 0.390 3.610 15 N -0.572 5.572 16 C 0.499 3.501 17 F -0.080 7.080 18 N -0.542 5.542 19 C 0.213 3.787 20 C -0.155 4.155 21 Cl -0.007 7.007 22 H 0.051 0.949 23 H 0.042 0.958 24 H 0.022 0.978 25 H 0.263 0.737 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 0.009 11.095 11.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.127 3.873 3 H 0.043 0.957 4 C -0.554 4.554 5 H 0.087 0.913 6 C -0.180 4.180 7 N -0.559 5.559 8 Si 0.786 3.214 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.188 1.188 12 N -0.198 5.198 13 C -0.107 4.107 14 C 0.153 3.847 15 N -0.298 5.298 16 C 0.217 3.783 17 F -0.059 7.059 18 N -0.264 5.264 19 C 0.049 3.951 20 C -0.189 4.189 21 Cl 0.022 6.978 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.041 0.959 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.725 -0.095 11.265 11.590 hybrid contribution -0.318 -0.197 -1.279 1.333 sum 2.407 -0.292 9.986 10.276 Atomic orbital electron populations 1.22176 0.99493 1.00225 0.98796 1.19187 0.90042 0.93731 0.84349 0.95718 1.21221 1.35581 1.08690 0.89897 0.91250 1.25638 0.95129 0.95467 1.01807 1.70057 1.43843 1.17387 1.24600 0.85501 0.78590 0.78433 0.78889 1.20403 1.21266 1.18835 1.60326 1.55609 1.04149 0.99678 1.22240 0.99144 0.86860 1.02462 1.20300 0.84566 0.88486 0.91396 1.68176 1.18861 1.31750 1.11054 1.19050 0.83282 0.89541 0.86386 1.91705 1.41141 1.91750 1.81340 1.68012 1.06302 1.17513 1.34588 1.23614 0.89585 0.94124 0.87773 1.22576 0.93581 1.03085 0.99674 1.98399 1.24954 1.93303 1.81194 0.93021 0.93916 0.95939 0.92779 0.94186 0.89936 0.91508 0.74984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.02 8.14 71.98 0.59 -6.43 15 2 C 0.23 11.03 2.19 44.17 0.10 11.13 15 3 H 0.02 1.33 8.09 -2.39 -0.02 1.31 15 4 C -0.52 -26.32 7.99 25.60 0.20 -26.12 15 5 H 0.07 3.46 6.55 -2.91 -0.02 3.44 15 6 C 0.02 1.01 5.29 84.65 0.45 1.45 15 7 N -0.92 -50.86 11.99 21.45 0.26 -50.60 15 8 Si 0.96 41.56 29.54 68.60 2.03 43.59 15 9 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 10 H -0.29 -12.38 7.11 99.48 0.71 -11.67 15 11 H -0.26 -11.02 7.11 99.48 0.71 -10.31 15 12 N -0.48 -19.45 4.23 -706.18 -2.99 -22.44 15 13 C 0.04 1.48 8.38 127.69 1.07 2.55 15 14 C 0.39 14.43 4.98 133.18 0.66 15.09 15 15 N -0.57 -20.95 7.88 -198.65 -1.57 -22.52 15 16 C 0.50 16.43 9.46 180.75 1.71 18.14 15 17 F -0.08 -2.50 17.32 44.97 0.78 -1.72 15 18 N -0.54 -15.67 10.45 -201.38 -2.10 -17.77 15 19 C 0.21 5.26 11.10 84.57 0.94 6.20 15 20 C -0.15 -4.81 6.38 22.61 0.14 -4.66 15 21 Cl -0.01 -0.22 28.58 -2.72 -0.08 -0.30 15 22 H 0.05 2.70 6.84 -2.39 -0.02 2.68 15 23 H 0.04 1.97 6.65 -2.39 -0.02 1.95 15 24 H 0.02 1.00 6.24 -2.38 -0.01 0.99 15 25 H 0.26 13.91 8.31 -92.71 -0.77 13.14 15 26 H 0.04 1.53 6.00 -2.39 -0.01 1.52 15 27 H 0.08 3.09 6.46 -2.39 -0.02 3.08 15 28 H 0.07 2.17 8.11 -2.39 -0.02 2.15 15 29 H 0.23 3.39 8.06 -2.91 -0.02 3.37 15 Total: -1.00 -57.29 266.54 3.38 -53.90 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: 1.19 Total: 0.51 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 5.86 Total: 17.35 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -6.40 Total: -113.33 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -0.08 Total: -0.30 kcal Total: -57.29 3.38 -53.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697106868.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.356 kcal (2) G-P(sol) polarization free energy of solvation -57.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds