Wall clock time and date at job start Mon Mar 30 2020 06:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.33640 * 122.75129 * 84.70695 * 10 9 7 12 12 S 1.76194 * 107.92451 * 179.97438 * 11 10 9 13 13 C 1.70973 * 90.28215 * 0.27429 * 12 11 10 14 14 C 1.50702 * 124.91401 * 179.84122 * 13 12 11 15 15 C 1.52997 * 109.47248 * 269.99723 * 14 13 12 16 16 H 1.09003 * 115.54827 * 29.33074 * 15 14 13 17 17 C 1.53001 * 117.50137 * 243.62598 * 15 14 13 18 18 C 1.52998 * 117.50361 * 175.00033 * 15 14 13 19 19 F 1.39898 * 117.50599 * 214.98315 * 18 15 14 20 20 F 1.39900 * 117.49540 * 0.02562 * 18 15 14 21 21 N 1.29018 * 110.17210 * 359.84040 * 13 12 11 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.08000 * 126.03367 * 0.04036 * 11 10 9 26 26 H 1.08995 * 109.47244 * 30.00029 * 14 13 12 27 27 H 1.09008 * 109.47247 * 150.00055 * 14 13 12 28 28 H 1.08998 * 117.50102 * 359.97438 * 17 15 14 29 29 H 1.09001 * 117.49642 * 145.02150 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.7788 -4.1268 1.1197 12 16 3.8534 -5.4490 0.6708 13 6 3.4644 -5.2167 -0.9778 14 6 4.0258 -6.0255 -2.1188 15 6 5.3070 -5.3642 -2.6307 16 1 5.8747 -4.8022 -1.8890 17 6 5.3048 -4.8373 -4.0671 18 6 6.0962 -6.0988 -3.7162 19 9 7.4911 -5.9976 -3.6813 20 9 5.5907 -7.3237 -4.1651 21 7 2.6206 -4.2488 -1.1037 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.5950 -3.7698 2.1223 26 1 4.2508 -7.0343 -1.7729 27 1 3.2941 -6.0727 -2.9253 28 1 4.3907 -4.9621 -4.6476 29 1 5.8710 -3.9284 -4.2706 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701976320.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:09 Heat of formation + Delta-G solvation = -38.094484 kcal Electronic energy + Delta-G solvation = -16278.641898 eV Core-core repulsion = 13158.055573 eV Total energy + Delta-G solvation = -3120.586325 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.78858 -47.46836 -39.31940 -36.99371 -33.37515 -31.66245 -28.91039 -27.16559 -24.09435 -22.76932 -22.27862 -20.88507 -19.16556 -17.97102 -16.90874 -16.74716 -16.38149 -16.03652 -14.95458 -14.57110 -14.18780 -14.11726 -13.87516 -13.72427 -13.41246 -13.24612 -12.73411 -12.25880 -12.15330 -11.85073 -11.58672 -11.11637 -10.81564 -10.70891 -10.53430 -10.09142 -9.80140 -9.49615 -9.07790 -8.88895 -8.47357 -8.00064 -6.09368 -4.12593 1.23322 1.84635 2.25282 2.85250 2.97301 3.26695 3.33762 3.37868 3.54475 4.00472 4.21702 4.39592 4.42601 4.59920 4.98990 5.26519 5.32267 5.35425 5.44424 5.62549 5.76527 5.88026 5.99047 6.26987 6.96295 7.42396 7.50289 7.85962 8.23187 8.47065 8.90237 9.50625 11.01045 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.022908 B = 0.005053 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.997647 B = 5539.506591 C = 6204.185700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.084 3.916 10 C 0.110 3.890 11 C -0.256 4.256 12 S 0.054 5.946 13 C 0.036 3.964 14 C -0.009 4.009 15 C -0.137 4.137 16 H 0.132 0.868 17 C -0.163 4.163 18 C 0.191 3.809 19 F -0.163 7.163 20 F -0.161 7.161 21 N -0.450 5.450 22 H 0.262 0.738 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.173 0.827 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.127 0.873 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.977 -12.383 -4.010 16.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.074 0.926 9 C 0.044 3.956 10 C -0.019 4.019 11 C -0.394 4.394 12 S 0.306 5.694 13 C -0.242 4.242 14 C -0.050 4.050 15 C -0.157 4.157 16 H 0.150 0.850 17 C -0.200 4.200 18 C 0.154 3.846 19 F -0.143 7.143 20 F -0.141 7.141 21 N -0.164 5.164 22 H 0.072 0.928 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.190 0.810 26 H 0.113 0.887 27 H 0.120 0.880 28 H 0.145 0.855 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.303 -12.851 -3.989 16.947 hybrid contribution 0.062 1.556 0.043 1.557 sum 10.365 -11.295 -3.946 15.830 Atomic orbital electron populations 1.69957 1.06001 1.26840 1.50350 1.24977 0.94903 0.99242 0.95106 0.86449 0.80038 0.83353 0.77680 1.19744 1.20852 1.20883 1.21004 0.92962 0.89693 1.51192 0.92586 1.18013 0.91343 0.87285 0.98958 1.21249 0.98532 0.97098 0.85034 1.26751 1.05484 1.02537 1.04593 1.83545 1.46186 1.34894 1.04733 1.26554 1.00850 0.99883 0.96951 1.19672 0.94068 0.96380 0.94858 1.23670 0.97826 1.00127 0.94125 0.84970 1.24459 1.02226 0.95656 0.97686 1.20180 0.75496 0.82342 1.06577 1.93021 1.28329 1.96023 1.96940 1.93012 1.86031 1.45051 1.90023 1.66178 1.11284 1.06432 1.32538 0.92783 0.94442 0.94274 0.80975 0.88723 0.88016 0.85507 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.36 15 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 7 C -0.51 -14.24 9.09 -34.44 -0.31 -14.56 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 15 9 C 0.08 2.17 5.39 -29.03 -0.16 2.01 15 10 C 0.11 2.44 5.93 -84.22 -0.50 1.94 15 11 C -0.26 -4.86 11.14 29.12 0.32 -4.53 15 12 S 0.05 0.82 23.18 -107.50 -2.49 -1.67 15 13 C 0.04 0.59 6.59 -13.46 -0.09 0.50 15 14 C -0.01 -0.11 5.72 -27.88 -0.16 -0.27 15 15 C -0.14 -1.56 5.71 -90.62 -0.52 -2.08 15 16 H 0.13 1.54 8.07 -51.93 -0.42 1.12 15 17 C -0.16 -1.65 10.15 -26.73 -0.27 -1.92 15 18 C 0.19 2.11 5.20 -26.73 -0.14 1.97 15 19 F -0.16 -1.97 17.60 2.25 0.04 -1.93 15 20 F -0.16 -1.87 17.14 2.25 0.04 -1.83 15 21 N -0.45 -9.24 10.53 -8.06 -0.08 -9.33 15 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 23 H 0.04 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.04 1.09 8.14 -51.93 -0.42 0.67 15 25 H 0.17 3.02 8.06 -52.49 -0.42 2.60 15 26 H 0.09 0.96 8.14 -51.93 -0.42 0.54 15 27 H 0.10 1.19 7.88 -51.92 -0.41 0.78 15 28 H 0.13 1.17 8.03 -51.93 -0.42 0.75 15 29 H 0.12 1.13 8.14 -51.93 -0.42 0.71 15 LS Contribution 283.63 15.07 4.27 4.27 Total: -1.00 -30.27 283.63 -7.33 -37.59 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: -2.90 Total: -2.74 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -1.92 Total: -15.36 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.65 Total: -34.69 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.08 Total: -3.76 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.49 Total: -1.67 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.27 -7.33 -37.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701976320.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.503 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds