Wall clock time and date at job start Mon Mar 30 2020 06:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47166 * 180.02562 * 9 7 2 11 11 C 1.33640 * 122.75294 * 84.70823 * 10 9 7 12 12 S 1.76193 * 107.92697 * 179.97438 * 11 10 9 13 13 C 1.70982 * 90.28249 * 0.27451 * 12 11 10 14 14 C 1.50701 * 124.91467 * 179.84491 * 13 12 11 15 15 C 1.52999 * 109.46567 * 269.99450 * 14 13 12 16 16 H 1.09002 * 115.55202 * 29.33378 * 15 14 13 17 17 C 1.53006 * 117.49546 * 175.00352 * 15 14 13 18 18 C 1.53002 * 59.99930 * 107.49113 * 17 15 14 19 19 F 1.39893 * 117.49507 * 252.50879 * 18 17 15 20 20 F 1.39904 * 117.49949 * 107.49136 * 18 17 15 21 21 N 1.29029 * 110.16595 * 359.83927 * 13 12 11 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.08000 * 126.03419 * 0.03700 * 11 10 9 26 26 H 1.08991 * 109.47705 * 29.99335 * 14 13 12 27 27 H 1.08994 * 109.47032 * 150.00150 * 14 13 12 28 28 H 1.09003 * 117.49706 * 214.97979 * 17 15 14 29 29 H 1.08996 * 117.50264 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.7789 -4.1268 1.1186 12 16 3.8535 -5.4490 0.6697 13 6 3.4645 -5.2167 -0.9790 14 6 4.0259 -6.0255 -2.1199 15 6 5.3071 -5.3641 -2.6318 16 1 5.8748 -4.8022 -1.8901 17 6 6.0962 -6.0989 -3.7174 18 6 5.3049 -4.8372 -4.0682 19 9 4.1316 -4.9970 -4.8130 20 9 6.0316 -3.6707 -4.3295 21 7 2.6207 -4.2487 -1.1048 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 2.5951 -3.7698 2.1212 26 1 4.2510 -7.0343 -1.7740 27 1 3.2942 -6.0726 -2.9264 28 1 7.1830 -6.0200 -3.6901 29 1 5.7029 -7.0535 -4.0666 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701976321.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:12 Heat of formation + Delta-G solvation = -37.078141 kcal Electronic energy + Delta-G solvation = -16493.507797 eV Core-core repulsion = 13372.965544 eV Total energy + Delta-G solvation = -3120.542253 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.62173 -47.30490 -39.28157 -36.97930 -33.34377 -31.65292 -28.88569 -27.13116 -24.04467 -22.69580 -22.27699 -20.83539 -19.16280 -17.83470 -16.87613 -16.75516 -16.34531 -15.91971 -14.95003 -14.48332 -14.26067 -14.00493 -13.69604 -13.57687 -13.31365 -13.22770 -12.73385 -12.22009 -12.06793 -11.78509 -11.56510 -11.07542 -10.98423 -10.71550 -10.48239 -9.94923 -9.76534 -9.47503 -9.03449 -8.86612 -8.42912 -7.97384 -6.05268 -4.08313 1.26447 1.87156 2.26733 2.92779 3.04703 3.30937 3.36855 3.41077 3.56243 3.98869 4.21591 4.44382 4.53860 4.62680 4.99322 5.19210 5.30517 5.32732 5.41731 5.59627 5.78595 5.91070 6.01273 6.29860 6.99400 7.45447 7.54619 7.89950 8.27257 8.51515 8.94048 9.54682 11.05175 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.018248 B = 0.006231 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.087940 B = 4492.232543 C = 5437.887906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.084 3.916 10 C 0.111 3.889 11 C -0.256 4.256 12 S 0.051 5.949 13 C 0.035 3.965 14 C -0.012 4.012 15 C -0.142 4.142 16 H 0.132 0.868 17 C -0.171 4.171 18 C 0.201 3.799 19 F -0.155 7.155 20 F -0.161 7.161 21 N -0.449 5.449 22 H 0.263 0.737 23 H 0.038 0.962 24 H 0.039 0.961 25 H 0.173 0.827 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.123 0.877 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.420 -14.701 -3.453 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.044 3.956 10 C -0.018 4.018 11 C -0.393 4.393 12 S 0.303 5.697 13 C -0.244 4.244 14 C -0.053 4.053 15 C -0.162 4.162 16 H 0.150 0.850 17 C -0.209 4.209 18 C 0.165 3.835 19 F -0.136 7.136 20 F -0.141 7.141 21 N -0.163 5.163 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.190 0.810 26 H 0.117 0.883 27 H 0.121 0.879 28 H 0.141 0.859 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.691 -15.087 -3.458 19.397 hybrid contribution -0.172 1.951 -0.069 1.960 sum 11.519 -13.136 -3.527 17.824 Atomic orbital electron populations 1.69950 1.05993 1.26923 1.50322 1.24971 0.94905 0.99221 0.95084 0.86502 0.79885 0.83034 0.78110 1.20565 1.19818 1.21037 1.20964 0.92927 0.89716 1.51261 0.92664 1.18014 0.91356 0.87283 0.98958 1.21265 0.98497 0.97067 0.85012 1.26736 1.05500 1.02564 1.04545 1.83448 1.46396 1.35043 1.04782 1.26622 1.00848 0.99916 0.96973 1.19700 0.94411 0.96327 0.94887 1.23642 0.99317 1.01283 0.91976 0.85018 1.24423 1.00990 0.95829 0.99691 1.19989 0.83160 0.84951 0.95430 1.93023 1.47368 1.95270 1.77894 1.93036 1.76261 1.49873 1.94929 1.66188 1.11261 1.06385 1.32516 0.92749 0.94434 0.94250 0.80972 0.88336 0.87876 0.85860 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.27 -6.70 7.11 56.52 0.40 -6.29 15 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 7 C -0.51 -14.70 9.09 -34.44 -0.31 -15.02 15 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 15 9 C 0.08 2.24 5.39 -29.04 -0.16 2.08 15 10 C 0.11 2.54 5.93 -84.23 -0.50 2.04 15 11 C -0.26 -4.96 11.14 29.12 0.32 -4.63 15 12 S 0.05 0.77 23.18 -107.50 -2.49 -1.72 15 13 C 0.04 0.59 6.60 -13.46 -0.09 0.50 15 14 C -0.01 -0.15 6.06 -27.88 -0.17 -0.32 15 15 C -0.14 -1.63 5.71 -90.62 -0.52 -2.14 15 16 H 0.13 1.55 8.07 -51.93 -0.42 1.13 15 17 C -0.17 -1.40 10.22 -26.73 -0.27 -1.67 15 18 C 0.20 2.63 5.20 -26.73 -0.14 2.49 15 19 F -0.16 -2.31 16.47 2.25 0.04 -2.27 15 20 F -0.16 -2.43 17.60 2.25 0.04 -2.39 15 21 N -0.45 -9.73 10.53 -8.05 -0.08 -9.82 15 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 23 H 0.04 1.01 8.14 -51.92 -0.42 0.59 15 24 H 0.04 1.14 8.14 -51.93 -0.42 0.71 15 25 H 0.17 3.08 8.06 -52.49 -0.42 2.66 15 26 H 0.10 0.86 8.14 -51.93 -0.42 0.44 15 27 H 0.10 1.33 7.06 -51.93 -0.37 0.96 15 28 H 0.12 0.77 8.14 -51.93 -0.42 0.34 15 29 H 0.12 0.74 8.14 -51.93 -0.42 0.32 15 LS Contribution 282.67 15.07 4.26 4.26 Total: -1.00 -32.29 282.67 -7.32 -39.61 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: -2.86 Total: -3.67 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -1.93 Total: -15.03 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.65 Total: -35.80 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.08 Total: -4.66 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.49 Total: -1.72 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.29 -7.32 -39.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701976321.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.532 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds