Wall clock time and date at job start Mon Mar 30 2020 06:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86799 * 119.99583 * 2 1 4 4 H 1.48496 * 109.47153 * 270.00261 * 3 2 1 5 5 H 1.48501 * 109.47346 * 30.00509 * 3 2 1 6 6 H 1.48503 * 109.46566 * 150.00458 * 3 2 1 7 7 C 1.40043 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00074 * 197.94046 * 7 2 1 9 9 C 1.41032 * 120.00230 * 17.94213 * 7 2 1 10 10 C 1.40924 * 120.11820 * 24.68535 * 9 7 2 11 11 C 1.36252 * 119.87988 * 179.97438 * 10 9 7 12 12 C 1.39946 * 120.12093 * 359.97291 * 11 10 9 13 13 C 1.47954 * 119.87985 * 180.02562 * 12 11 10 14 14 N 1.32846 * 119.75609 * 324.99493 * 13 12 11 15 15 C 1.31646 * 121.61529 * 180.02562 * 14 13 12 16 16 C 1.38432 * 120.94765 * 0.02562 * 15 14 13 17 17 C 1.38730 * 119.40601 * 359.97438 * 16 15 14 18 18 C 1.38544 * 118.51342 * 0.27445 * 17 16 15 19 19 Cl 1.73598 * 120.48451 * 179.72171 * 18 17 16 20 20 C 1.39938 * 120.23527 * 0.30041 * 12 11 10 21 21 C 1.36261 * 120.11752 * 359.44321 * 20 12 11 22 22 H 0.96994 * 120.00567 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.05750 * 359.95102 * 10 9 7 24 24 H 1.08001 * 119.94203 * 179.97438 * 11 10 9 25 25 H 1.08001 * 119.52917 * 179.97438 * 15 14 13 26 26 H 1.07997 * 120.29525 * 179.97438 * 16 15 14 27 27 H 1.08006 * 120.74352 * 180.02562 * 17 16 15 28 28 H 1.07997 * 119.94186 * 179.72597 * 20 12 11 29 29 H 1.08008 * 120.06016 * 180.27901 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4890 2.0465 -1.4000 5 1 1.4391 2.6527 0.7001 6 1 3.5392 1.4402 0.7000 7 6 2.0079 -1.2128 -0.0005 8 1 3.0486 -1.2357 0.2876 9 6 1.3543 -2.4043 -0.3773 10 6 0.2264 -2.3559 -1.2209 11 6 -0.4011 -3.5100 -1.5823 12 6 0.0728 -4.7422 -1.1178 13 6 -0.6123 -5.9922 -1.5140 14 7 -1.9317 -6.0006 -1.6681 15 6 -2.5786 -7.0921 -2.0192 16 6 -1.9029 -8.2796 -2.2416 17 6 -0.5242 -8.3171 -2.0923 18 6 0.1322 -7.1562 -1.7171 19 17 1.8556 -7.1471 -1.5084 20 6 1.1889 -4.7957 -0.2753 21 6 1.8270 -3.6478 0.0880 22 1 -0.4851 0.8399 0.0004 23 1 -0.1401 -1.4055 -1.5800 24 1 -1.2657 -3.4740 -2.2284 25 1 -3.6520 -7.0608 -2.1345 26 1 -2.4442 -9.1689 -2.5289 27 1 0.0247 -9.2319 -2.2608 28 1 1.5479 -5.7487 0.0839 29 1 2.6910 -3.6905 0.7346 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705949731.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:18 Heat of formation + Delta-G solvation = 43.082540 kcal Electronic energy + Delta-G solvation = -15841.217865 eV Core-core repulsion = 13140.504368 eV Total energy + Delta-G solvation = -2700.713496 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.74854 -37.43094 -36.19287 -34.01699 -32.16931 -31.30614 -29.56550 -28.93823 -25.60911 -23.19801 -22.76862 -20.81717 -20.26607 -17.49905 -16.86594 -16.01220 -15.77760 -15.33192 -14.30009 -14.02679 -13.89351 -13.22278 -13.01076 -12.78537 -12.25794 -12.15201 -11.71681 -11.51169 -11.29208 -11.22118 -10.90881 -10.60093 -10.44491 -9.70493 -9.59592 -9.46143 -9.28426 -8.96997 -8.49731 -7.55973 -7.24664 -6.93825 -4.47589 1.21823 1.46386 2.50126 2.69021 2.98947 3.02379 3.12011 3.14999 3.79935 4.09969 4.53660 4.81429 4.99441 5.10089 5.27176 5.62519 5.67191 5.98207 6.21216 6.25382 6.35140 6.38426 6.84723 6.91893 6.93021 7.18846 7.25110 7.54519 7.80135 7.93654 8.01352 8.15838 8.42891 8.50820 8.72004 8.85250 9.97237 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.037309 B = 0.005310 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.307839 B = 5271.928108 C = 5908.997254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.443 4.443 8 H 0.083 0.917 9 C 0.126 3.874 10 C -0.181 4.181 11 C -0.045 4.045 12 C -0.214 4.214 13 C 0.238 3.762 14 N -0.482 5.482 15 C 0.110 3.890 16 C -0.209 4.209 17 C -0.062 4.062 18 C -0.110 4.110 19 Cl -0.055 7.055 20 C -0.049 4.049 21 C -0.234 4.234 22 H 0.286 0.714 23 H 0.119 0.881 24 H 0.094 0.906 25 H 0.153 0.847 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.103 0.897 29 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 -9.408 -3.236 10.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.148 4.148 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.471 4.471 8 H 0.101 0.899 9 C 0.123 3.877 10 C -0.201 4.201 11 C -0.065 4.065 12 C -0.216 4.216 13 C 0.104 3.896 14 N -0.192 5.192 15 C -0.049 4.049 16 C -0.230 4.230 17 C -0.088 4.088 18 C -0.139 4.139 19 Cl -0.027 7.027 20 C -0.068 4.068 21 C -0.254 4.254 22 H 0.097 0.903 23 H 0.137 0.863 24 H 0.112 0.888 25 H 0.170 0.830 26 H 0.150 0.850 27 H 0.152 0.848 28 H 0.121 0.879 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.650 -8.476 -3.054 9.159 hybrid contribution 0.790 -0.169 -0.096 0.814 sum -0.859 -8.644 -3.150 9.241 Atomic orbital electron populations 1.69813 1.07801 1.29893 1.32025 1.26065 0.94800 1.01778 0.92119 0.86232 0.80531 0.80028 0.79581 1.18997 1.20082 1.18367 1.19781 0.98377 0.91332 1.37598 0.89862 1.17774 0.90566 0.92101 0.87267 1.20972 1.00079 0.96909 1.02106 1.20428 0.96803 0.91706 0.97530 1.17667 1.01947 0.89570 1.12461 1.20095 0.87918 0.92062 0.89480 1.68086 1.08149 1.29069 1.13887 1.22811 1.00293 0.88265 0.93521 1.21912 0.94074 1.00001 1.06993 1.21324 0.94564 0.96805 0.96148 1.22006 0.85988 0.96585 1.09326 1.98326 1.10529 1.98386 1.95418 1.20722 0.93303 0.97545 0.95273 1.20641 1.04338 0.92711 1.07699 0.90334 0.86325 0.88770 0.82991 0.85019 0.84802 0.87920 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.25 10.96 55.55 0.61 -18.64 15 2 C 0.07 1.76 5.13 -17.33 -0.09 1.67 15 3 Si 0.91 17.81 29.60 -169.99 -5.03 12.78 15 4 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 5 H -0.28 -5.27 7.11 56.52 0.40 -4.86 15 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 7 C -0.44 -11.30 9.03 -37.85 -0.34 -11.65 15 8 H 0.08 2.02 7.91 -52.48 -0.42 1.61 15 9 C 0.13 3.30 5.57 -106.80 -0.60 2.70 15 10 C -0.18 -4.70 8.63 -39.28 -0.34 -5.03 15 11 C -0.05 -1.11 9.51 -39.66 -0.38 -1.49 15 12 C -0.21 -4.97 5.60 -104.64 -0.59 -5.55 15 13 C 0.24 4.91 6.47 -82.92 -0.54 4.37 15 14 N -0.48 -9.42 9.95 -9.76 -0.10 -9.52 15 15 C 0.11 1.66 11.18 -17.56 -0.20 1.46 15 16 C -0.21 -2.72 10.11 -39.33 -0.40 -3.12 15 17 C -0.06 -0.89 9.97 -39.29 -0.39 -1.28 15 18 C -0.11 -1.95 6.29 -38.94 -0.24 -2.19 15 19 Cl -0.06 -0.94 24.70 -51.86 -1.28 -2.22 15 20 C -0.05 -1.13 8.09 -39.66 -0.32 -1.45 15 21 C -0.23 -5.70 9.73 -39.27 -0.38 -6.08 15 22 H 0.29 6.42 8.29 -40.82 -0.34 6.08 15 23 H 0.12 3.13 6.16 -52.49 -0.32 2.81 15 24 H 0.09 2.19 7.94 -52.49 -0.42 1.77 15 25 H 0.15 1.75 8.06 -52.49 -0.42 1.33 15 26 H 0.13 1.23 8.06 -52.49 -0.42 0.81 15 27 H 0.13 1.52 8.06 -52.48 -0.42 1.09 15 28 H 0.10 2.13 5.51 -52.49 -0.29 1.84 15 29 H 0.10 2.17 8.06 -52.48 -0.42 1.74 15 LS Contribution 269.90 15.07 4.07 4.07 Total: -1.00 -27.47 269.90 -8.80 -36.27 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -2.27 Total: 4.89 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -4.80 Total: -27.64 kcal Atomic # 7 Polarization: -28.67 SS G_CDS: 0.51 Total: -28.16 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.28 Total: -2.22 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.47 -8.80 -36.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705949731.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.352 kcal (2) G-P(sol) polarization free energy of solvation -27.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds