Wall clock time and date at job start Mon Mar 30 2020 06:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86799 * 119.99583 * 2 1 4 4 H 1.48496 * 109.47153 * 270.00261 * 3 2 1 5 5 H 1.48501 * 109.47346 * 30.00509 * 3 2 1 6 6 H 1.48503 * 109.46566 * 150.00458 * 3 2 1 7 7 C 1.40043 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00074 * 197.94046 * 7 2 1 9 9 C 1.41032 * 120.00230 * 17.94213 * 7 2 1 10 10 C 1.40924 * 120.11820 * 24.68535 * 9 7 2 11 11 C 1.36252 * 119.87988 * 179.97438 * 10 9 7 12 12 C 1.39946 * 120.12093 * 359.97291 * 11 10 9 13 13 C 1.47954 * 119.87985 * 180.02562 * 12 11 10 14 14 N 1.32846 * 119.75609 * 324.99493 * 13 12 11 15 15 C 1.31646 * 121.61529 * 180.02562 * 14 13 12 16 16 C 1.38432 * 120.94765 * 0.02562 * 15 14 13 17 17 C 1.38730 * 119.40601 * 359.97438 * 16 15 14 18 18 C 1.38544 * 118.51342 * 0.27445 * 17 16 15 19 19 Cl 1.73598 * 120.48451 * 179.72171 * 18 17 16 20 20 C 1.39938 * 120.23527 * 0.30041 * 12 11 10 21 21 C 1.36261 * 120.11752 * 359.44321 * 20 12 11 22 22 H 0.96994 * 120.00567 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.05750 * 359.95102 * 10 9 7 24 24 H 1.08001 * 119.94203 * 179.97438 * 11 10 9 25 25 H 1.08001 * 119.52917 * 179.97438 * 15 14 13 26 26 H 1.07997 * 120.29525 * 179.97438 * 16 15 14 27 27 H 1.08006 * 120.74352 * 180.02562 * 17 16 15 28 28 H 1.07997 * 119.94186 * 179.72597 * 20 12 11 29 29 H 1.08008 * 120.06016 * 180.27901 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4890 2.0465 -1.4000 5 1 1.4391 2.6527 0.7001 6 1 3.5392 1.4402 0.7000 7 6 2.0079 -1.2128 -0.0005 8 1 3.0486 -1.2357 0.2876 9 6 1.3543 -2.4043 -0.3773 10 6 0.2264 -2.3559 -1.2209 11 6 -0.4011 -3.5100 -1.5823 12 6 0.0728 -4.7422 -1.1178 13 6 -0.6123 -5.9922 -1.5140 14 7 -1.9317 -6.0006 -1.6681 15 6 -2.5786 -7.0921 -2.0192 16 6 -1.9029 -8.2796 -2.2416 17 6 -0.5242 -8.3171 -2.0923 18 6 0.1322 -7.1562 -1.7171 19 17 1.8556 -7.1471 -1.5084 20 6 1.1889 -4.7957 -0.2753 21 6 1.8270 -3.6478 0.0880 22 1 -0.4851 0.8399 0.0004 23 1 -0.1401 -1.4055 -1.5800 24 1 -1.2657 -3.4740 -2.2284 25 1 -3.6520 -7.0608 -2.1345 26 1 -2.4442 -9.1689 -2.5289 27 1 0.0247 -9.2319 -2.2608 28 1 1.5479 -5.7487 0.0839 29 1 2.6910 -3.6905 0.7346 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705949731.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:17 Heat of formation + Delta-G solvation = 28.961920 kcal Electronic energy + Delta-G solvation = -15841.830181 eV Core-core repulsion = 13140.504368 eV Total energy + Delta-G solvation = -2701.325812 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.10902 -39.21902 -37.53492 -35.78515 -33.53639 -32.78974 -31.43626 -30.57582 -27.32029 -24.52371 -24.28934 -22.61271 -21.97389 -19.35560 -18.22384 -17.39189 -17.23080 -16.90714 -15.91723 -15.53736 -15.44856 -14.80576 -14.55680 -14.15140 -14.04431 -13.64034 -13.30902 -13.00890 -12.93216 -12.77196 -12.56774 -12.28802 -12.01566 -11.42728 -11.19104 -11.16218 -10.72331 -10.33030 -9.98812 -9.45025 -9.00733 -8.71873 -6.37969 -0.13350 0.23591 1.01570 1.17122 1.22186 1.38044 1.52190 1.53724 2.17476 2.59512 2.91601 3.46090 3.69115 3.91354 3.95452 4.12501 4.45433 4.47486 4.52412 4.73410 4.97303 5.02753 5.08260 5.10632 5.32540 5.36594 5.63478 5.67408 5.96757 6.05028 6.15155 6.28876 6.61872 6.84057 6.95678 7.09494 8.22819 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.037309 B = 0.005310 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.307839 B = 5271.928108 C = 5908.997254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.034 3.966 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.255 1.255 7 C -0.482 4.482 8 H 0.084 0.916 9 C 0.096 3.904 10 C -0.201 4.201 11 C -0.057 4.057 12 C -0.210 4.210 13 C 0.199 3.801 14 N -0.514 5.514 15 C 0.099 3.901 16 C -0.174 4.174 17 C -0.060 4.060 18 C -0.116 4.116 19 Cl -0.056 7.056 20 C -0.052 4.052 21 C -0.249 4.249 22 H 0.293 0.707 23 H 0.103 0.897 24 H 0.096 0.904 25 H 0.188 0.812 26 H 0.184 0.816 27 H 0.171 0.829 28 H 0.124 0.876 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 -12.029 -3.947 12.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.178 1.178 7 C -0.510 4.510 8 H 0.102 0.898 9 C 0.094 3.906 10 C -0.220 4.220 11 C -0.077 4.077 12 C -0.212 4.212 13 C 0.065 3.935 14 N -0.224 5.224 15 C -0.060 4.060 16 C -0.193 4.193 17 C -0.085 4.085 18 C -0.145 4.145 19 Cl -0.027 7.027 20 C -0.071 4.071 21 C -0.269 4.269 22 H 0.104 0.896 23 H 0.121 0.879 24 H 0.115 0.885 25 H 0.205 0.795 26 H 0.202 0.798 27 H 0.189 0.811 28 H 0.141 0.859 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.360 -11.117 -3.765 11.972 hybrid contribution 0.791 0.230 0.011 0.824 sum -1.569 -10.887 -3.754 11.622 Atomic orbital electron populations 1.69864 1.09313 1.31172 1.33086 1.26929 0.95496 1.04940 0.90975 0.85117 0.79128 0.75314 0.79680 1.18563 1.19043 1.17835 1.19991 0.98707 0.92380 1.39940 0.89788 1.18072 0.91208 0.93258 0.88105 1.20924 1.01023 0.96852 1.03241 1.20539 0.97009 0.92153 0.97957 1.17999 1.01602 0.90640 1.10988 1.19835 0.88905 0.91986 0.92814 1.67958 1.07988 1.31794 1.14678 1.23515 1.01989 0.87862 0.92639 1.22516 0.93571 1.00766 1.02460 1.21829 0.95399 0.96737 0.94576 1.22146 0.86062 0.96897 1.09416 1.98324 1.10588 1.98359 1.95419 1.20940 0.93246 0.97875 0.94992 1.20851 1.05037 0.92851 1.08142 0.89633 0.87879 0.88547 0.79506 0.79847 0.81115 0.85864 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.32 10.96 21.84 0.24 -42.08 15 2 C 0.03 1.69 5.13 85.29 0.44 2.13 15 3 Si 0.99 37.45 29.60 68.60 2.03 39.48 15 4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 5 H -0.27 -9.55 7.11 99.48 0.71 -8.84 15 6 H -0.25 -9.34 7.11 99.48 0.71 -8.63 15 7 C -0.48 -25.89 9.03 23.39 0.21 -25.68 15 8 H 0.08 4.29 7.91 -2.91 -0.02 4.27 15 9 C 0.10 5.33 5.57 -21.28 -0.12 5.21 15 10 C -0.20 -11.06 8.63 22.46 0.19 -10.87 15 11 C -0.06 -2.94 9.51 22.22 0.21 -2.73 15 12 C -0.21 -9.95 5.60 -19.88 -0.11 -10.07 15 13 C 0.20 8.01 6.47 41.91 0.27 8.29 15 14 N -0.51 -19.30 9.95 -184.78 -1.84 -21.14 15 15 C 0.10 2.56 11.18 84.77 0.95 3.51 15 16 C -0.17 -3.49 10.11 22.43 0.23 -3.26 15 17 C -0.06 -1.41 9.97 22.46 0.22 -1.19 15 18 C -0.12 -3.84 6.29 22.68 0.14 -3.70 15 19 Cl -0.06 -1.80 24.70 -2.72 -0.07 -1.87 15 20 C -0.05 -2.41 8.09 22.22 0.18 -2.23 15 21 C -0.25 -12.63 9.73 22.47 0.22 -12.41 15 22 H 0.29 13.70 8.29 -92.71 -0.77 12.93 15 23 H 0.10 5.86 6.16 -2.91 -0.02 5.84 15 24 H 0.10 4.71 7.94 -2.91 -0.02 4.69 15 25 H 0.19 3.41 8.06 -2.91 -0.02 3.39 15 26 H 0.18 1.91 8.06 -2.91 -0.02 1.89 15 27 H 0.17 2.82 8.06 -2.91 -0.02 2.80 15 28 H 0.12 5.12 5.51 -2.91 -0.02 5.10 15 29 H 0.10 4.90 8.06 -2.91 -0.02 4.88 15 Total: -1.00 -63.80 269.90 4.58 -59.22 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 1.18 Total: 19.40 kcal Atomic # 6 Polarization: -56.04 SS G_CDS: 3.03 Total: -53.01 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -1.60 Total: -63.22 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.07 Total: -1.87 kcal Total: -63.80 4.58 -59.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705949731.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.186 kcal (2) G-P(sol) polarization free energy of solvation -63.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds