Wall clock time and date at job start Mon Mar 30 2020 06:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86799 * 120.00272 * 2 1 4 4 H 1.48499 * 109.47085 * 239.99792 * 3 2 1 5 5 H 1.48502 * 109.46949 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46898 * 119.99976 * 3 2 1 7 7 C 1.40111 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00009 * 195.29355 * 7 2 1 9 9 C 1.40881 * 119.99802 * 15.29886 * 7 2 1 10 10 C 1.40748 * 120.33323 * 27.15708 * 9 7 2 11 11 C 1.36448 * 119.98953 * 180.32607 * 10 9 7 12 12 C 1.38908 * 120.68754 * 359.66782 * 11 10 9 13 13 C 1.38114 * 120.67020 * 0.03066 * 12 11 10 14 14 C 1.39159 * 119.98377 * 359.97438 * 13 12 11 15 15 C 1.47839 * 120.33558 * 180.02562 * 14 13 12 16 16 N 1.32885 * 119.75461 * 231.23562 * 15 14 13 17 17 C 1.31645 * 121.60681 * 179.97438 * 16 15 14 18 18 C 1.38424 * 120.95227 * 0.02562 * 17 16 15 19 19 C 1.38743 * 119.41808 * 359.97438 * 18 17 16 20 20 C 1.38526 * 118.51420 * 0.28534 * 19 18 17 21 21 Cl 1.73602 * 120.48846 * 179.69895 * 20 19 18 22 22 H 0.97001 * 119.99480 * 0.02562 * 1 2 3 23 23 H 1.08009 * 120.00460 * 359.97438 * 10 9 7 24 24 H 1.08005 * 119.65678 * 179.70151 * 11 10 9 25 25 H 1.07998 * 119.66337 * 180.02562 * 12 11 10 26 26 H 1.08005 * 120.00287 * 179.97438 * 13 12 11 27 27 H 1.07997 * 119.52475 * 179.97438 * 17 16 15 28 28 H 1.08003 * 120.29564 * 179.97438 * 18 17 16 29 29 H 1.08000 * 120.74097 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0953 1.6963 -1.2125 5 1 1.2765 2.7464 0.0006 6 1 3.0953 1.6963 1.2126 7 6 2.0080 -1.2134 0.0005 8 1 3.0592 -1.2299 0.2472 9 6 1.3409 -2.4120 -0.3208 10 6 0.2116 -2.3938 -1.1607 11 6 -0.4330 -3.5580 -1.4620 12 6 0.0170 -4.7697 -0.9534 13 6 1.1260 -4.8206 -0.1317 14 6 1.8046 -3.6501 0.1938 15 6 2.9929 -3.6956 1.0722 16 7 3.0630 -2.8928 2.1289 17 6 4.1033 -2.9033 2.9355 18 6 5.1700 -3.7564 2.7106 19 6 5.1397 -4.6123 1.6190 20 6 4.0362 -4.5781 0.7823 21 17 3.9483 -5.6212 -0.6026 22 1 -0.4849 0.8401 -0.0004 23 1 -0.1480 -1.4577 -1.5620 24 1 -1.3020 -3.5372 -2.1032 25 1 -0.5056 -5.6813 -1.2030 26 1 1.4663 -5.7686 0.2581 27 1 4.1253 -2.2361 3.7844 28 1 6.0184 -3.7559 3.3789 29 1 5.9600 -5.2870 1.4236 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705949732.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:11 Heat of formation + Delta-G solvation = 29.660929 kcal Electronic energy + Delta-G solvation = -16383.473807 eV Core-core repulsion = 13682.178306 eV Total energy + Delta-G solvation = -2701.295501 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.04290 -39.07203 -37.41974 -35.55424 -33.65098 -32.79096 -31.46894 -30.04086 -27.21213 -24.61986 -24.31757 -22.65854 -21.72212 -19.21215 -18.01112 -17.44901 -17.09867 -16.82028 -16.06328 -15.56648 -15.35330 -14.59245 -14.39107 -14.31345 -13.83889 -13.44339 -13.21777 -12.99373 -12.84653 -12.76256 -12.52937 -12.18624 -11.98218 -11.48136 -11.39375 -11.04957 -10.63318 -10.16611 -9.90552 -9.27002 -9.04335 -8.61494 -6.27155 0.00131 0.33766 1.02017 1.18454 1.23902 1.34970 1.45767 1.53896 2.19553 2.76074 2.91217 3.55954 3.72597 3.98660 4.06172 4.17475 4.46056 4.53547 4.59929 4.76902 4.96718 5.06173 5.13251 5.16925 5.31168 5.47942 5.67684 5.72423 6.03740 6.09016 6.20334 6.38152 6.68076 6.93186 7.03512 7.26002 8.32878 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.017282 B = 0.009834 C = 0.007009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.791541 B = 2846.621215 C = 3994.132360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.038 3.962 3 Si 0.973 3.027 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.451 4.451 8 H 0.063 0.937 9 C 0.112 3.888 10 C -0.187 4.187 11 C -0.098 4.098 12 C -0.246 4.246 13 C -0.055 4.055 14 C -0.200 4.200 15 C 0.207 3.793 16 N -0.489 5.489 17 C 0.085 3.915 18 C -0.169 4.169 19 C -0.067 4.067 20 C -0.111 4.111 21 Cl -0.059 7.059 22 H 0.289 0.711 23 H 0.103 0.897 24 H 0.112 0.888 25 H 0.119 0.881 26 H 0.108 0.892 27 H 0.178 0.822 28 H 0.182 0.818 29 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.036 -5.095 3.228 10.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.178 4.178 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.480 4.480 8 H 0.081 0.919 9 C 0.109 3.891 10 C -0.207 4.207 11 C -0.117 4.117 12 C -0.265 4.265 13 C -0.074 4.074 14 C -0.203 4.203 15 C 0.071 3.929 16 N -0.198 5.198 17 C -0.074 4.074 18 C -0.189 4.189 19 C -0.093 4.093 20 C -0.140 4.140 21 Cl -0.030 7.030 22 H 0.099 0.901 23 H 0.121 0.879 24 H 0.130 0.870 25 H 0.137 0.863 26 H 0.126 0.874 27 H 0.195 0.805 28 H 0.200 0.800 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 8.121 -4.452 3.291 9.828 hybrid contribution 0.572 0.179 -0.330 0.684 sum 8.693 -4.273 2.961 10.128 Atomic orbital electron populations 1.69826 1.08832 1.30574 1.35175 1.26691 0.95452 1.04174 0.91466 0.85387 0.79029 0.76266 0.79888 1.18591 1.18781 1.18690 1.19436 0.96689 0.91701 1.40185 0.91895 1.17801 0.90997 0.92002 0.88288 1.21030 1.00123 0.97323 1.02197 1.20769 0.98687 0.93027 0.99179 1.20600 1.01336 0.97191 1.07418 1.20744 0.94708 0.95516 0.96470 1.18498 1.00882 0.94471 1.06406 1.19807 0.92647 0.89202 0.91195 1.68128 1.27294 1.20642 1.03753 1.23481 0.89059 0.97151 0.97672 1.22499 1.01107 0.96481 0.98808 1.21785 0.96107 0.98654 0.92791 1.22276 0.98344 0.99392 0.93968 1.98321 1.98301 1.64742 1.41639 0.90074 0.87946 0.87012 0.86269 0.87448 0.80457 0.80038 0.81120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.50 10.98 21.86 0.24 -43.26 15 2 C 0.04 1.94 5.17 85.31 0.44 2.39 15 3 Si 0.97 39.40 29.59 68.60 2.03 41.43 15 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 15 5 H -0.26 -9.96 7.11 99.48 0.71 -9.26 15 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 15 7 C -0.45 -24.89 7.88 23.37 0.18 -24.70 15 8 H 0.06 3.50 6.94 -2.91 -0.02 3.48 15 9 C 0.11 6.22 5.57 -21.12 -0.12 6.10 15 10 C -0.19 -10.05 8.62 22.47 0.19 -9.86 15 11 C -0.10 -4.63 9.96 22.01 0.22 -4.41 15 12 C -0.25 -10.92 10.03 22.40 0.22 -10.69 15 13 C -0.06 -2.53 8.19 22.46 0.18 -2.35 15 14 C -0.20 -10.07 5.25 -19.62 -0.10 -10.18 15 15 C 0.21 9.30 5.53 41.88 0.23 9.53 15 16 N -0.49 -21.62 8.99 -184.84 -1.66 -23.28 15 17 C 0.09 2.75 11.18 84.77 0.95 3.70 15 18 C -0.17 -4.21 10.11 22.43 0.23 -3.99 15 19 C -0.07 -1.86 9.97 22.46 0.22 -1.64 15 20 C -0.11 -4.07 6.31 22.69 0.14 -3.92 15 21 Cl -0.06 -2.02 26.18 -2.72 -0.07 -2.09 15 22 H 0.29 13.88 8.29 -92.71 -0.77 13.11 15 23 H 0.10 5.69 6.26 -2.91 -0.02 5.67 15 24 H 0.11 4.59 8.06 -2.91 -0.02 4.57 15 25 H 0.12 4.48 8.06 -2.91 -0.02 4.46 15 26 H 0.11 4.42 7.31 -2.91 -0.02 4.40 15 27 H 0.18 4.53 8.06 -2.91 -0.02 4.50 15 28 H 0.18 2.69 8.06 -2.91 -0.02 2.67 15 29 H 0.17 3.38 8.06 -2.91 -0.02 3.36 15 Total: -1.00 -64.33 269.93 4.71 -59.62 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 1.18 Total: 17.59 kcal Atomic # 6 Polarization: -53.02 SS G_CDS: 3.00 Total: -50.02 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: -1.42 Total: -66.54 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.07 Total: -2.09 kcal Total: -64.33 4.71 -59.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705949732.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.284 kcal (2) G-P(sol) polarization free energy of solvation -64.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds