Wall clock time and date at job start Mon Mar 30 2020 06:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86808 * 119.99955 * 2 1 4 4 H 1.48503 * 109.46929 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47005 * 299.99965 * 3 2 1 6 6 H 1.48497 * 109.46762 * 60.00152 * 3 2 1 7 7 C 1.39933 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00192 * 197.90437 * 7 2 1 9 9 C 1.41425 * 119.99827 * 17.91341 * 7 2 1 10 10 C 1.40788 * 120.18887 * 24.47126 * 9 7 2 11 11 C 1.37677 * 119.99812 * 180.02562 * 10 9 7 12 12 C 1.38431 * 120.38490 * 359.71839 * 11 10 9 13 13 C 1.39707 * 120.36921 * 0.56310 * 12 11 10 14 14 C 1.48353 * 119.99670 * 179.71340 * 13 12 11 15 15 N 1.32669 * 119.73663 * 144.72657 * 14 13 12 16 16 C 1.31730 * 121.63366 * 179.97438 * 15 14 13 17 17 C 1.38294 * 120.91952 * 0.02562 * 16 15 14 18 18 C 1.38712 * 119.37983 * 359.97438 * 17 16 15 19 19 C 1.38571 * 118.49759 * 359.73731 * 18 17 16 20 20 Cl 1.73599 * 120.48219 * 180.28305 * 19 18 17 21 21 C 1.38798 * 119.99759 * 359.43798 * 13 12 11 22 22 H 0.97001 * 120.00253 * 0.02562 * 1 2 3 23 23 H 1.08008 * 119.99634 * 0.04417 * 10 9 7 24 24 H 1.08000 * 119.80712 * 180.02562 * 11 10 9 25 25 H 1.07995 * 119.81456 * 180.30490 * 12 11 10 26 26 H 1.07999 * 119.53970 * 180.02562 * 16 15 14 27 27 H 1.08004 * 120.31276 * 179.97438 * 17 16 15 28 28 H 1.08001 * 120.75310 * 179.97438 * 18 17 16 29 29 H 1.08005 * 120.18708 * 180.30080 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0487 -1.2344 0.2881 9 6 1.3522 -2.4071 -0.3756 10 6 0.2223 -2.3609 -1.2142 11 6 -0.4133 -3.5269 -1.5776 12 6 0.0552 -4.7493 -1.1277 13 6 1.1716 -4.8130 -0.2902 14 6 1.6629 -6.1271 0.1922 15 7 2.9653 -6.3257 0.3485 16 6 3.4424 -7.4772 0.7749 17 6 2.5965 -8.5288 1.0768 18 6 1.2271 -8.3650 0.9279 19 6 0.7521 -7.1414 0.4834 20 17 -0.9523 -6.8777 0.2857 21 6 1.8245 -3.6473 0.0858 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1457 -1.4109 -1.5727 24 1 -1.2796 -3.4879 -2.2213 25 1 -0.4475 -5.6586 -1.4224 26 1 4.5089 -7.6017 0.8903 27 1 2.9982 -9.4688 1.4253 28 1 0.5463 -9.1715 1.1568 29 1 2.6907 -3.6934 0.7292 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706720768.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:08 Heat of formation + Delta-G solvation = 45.684256 kcal Electronic energy + Delta-G solvation = -15886.400051 eV Core-core repulsion = 13185.799374 eV Total energy + Delta-G solvation = -2700.600677 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.96351 -37.34331 -36.29966 -33.82125 -32.34799 -31.42560 -29.85164 -28.35875 -25.34528 -23.45602 -23.22733 -20.56701 -20.40633 -17.64296 -16.51994 -16.20230 -15.61665 -15.19436 -14.78170 -14.08778 -13.89131 -13.31535 -13.03185 -12.79204 -12.36403 -11.95689 -11.82684 -11.57344 -11.17364 -11.06080 -10.97611 -10.56982 -10.27696 -9.75760 -9.63611 -9.45880 -9.13459 -9.10587 -8.67029 -7.46131 -7.20512 -6.73534 -4.32623 1.05468 1.29858 2.36210 2.78747 2.93194 3.09913 3.15743 3.21947 3.96316 4.00356 4.55756 4.67557 4.85646 4.93438 5.09503 5.46633 5.69787 5.76571 6.06976 6.08509 6.32587 6.48171 6.66766 6.96893 7.05716 7.19006 7.29769 7.52115 7.82620 7.99218 8.04071 8.15539 8.31661 8.62744 8.90270 8.95006 10.21951 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.030513 B = 0.005718 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.409602 B = 4895.852998 C = 5588.140098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.078 0.922 9 C 0.099 3.901 10 C -0.144 4.144 11 C -0.114 4.114 12 C -0.203 4.203 13 C -0.053 4.053 14 C 0.216 3.784 15 N -0.466 5.466 16 C 0.104 3.896 17 C -0.188 4.188 18 C -0.069 4.069 19 C -0.091 4.091 20 Cl -0.045 7.045 21 C -0.167 4.167 22 H 0.279 0.721 23 H 0.120 0.880 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.158 0.842 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.205 -11.642 1.153 11.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.097 0.903 9 C 0.097 3.903 10 C -0.164 4.164 11 C -0.132 4.132 12 C -0.223 4.223 13 C -0.054 4.054 14 C 0.080 3.920 15 N -0.174 5.174 16 C -0.054 4.054 17 C -0.208 4.208 18 C -0.095 4.095 19 C -0.120 4.120 20 Cl -0.016 7.016 21 C -0.188 4.188 22 H 0.090 0.910 23 H 0.138 0.862 24 H 0.110 0.890 25 H 0.121 0.879 26 H 0.175 0.825 27 H 0.155 0.845 28 H 0.157 0.843 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.440 -10.784 0.969 10.923 hybrid contribution -0.412 -0.011 0.315 0.519 sum 1.028 -10.795 1.284 10.920 Atomic orbital electron populations 1.69823 1.07543 1.29040 1.35877 1.25876 0.94699 1.01243 0.92282 0.86292 0.81078 0.81059 0.78481 1.18388 1.19749 1.20078 1.19570 0.98202 0.91098 1.40410 0.90345 1.17549 0.91594 0.91834 0.89356 1.21479 0.98539 0.96999 0.99395 1.20600 0.99107 0.92972 1.00527 1.20762 0.99066 0.97229 1.05225 1.17959 0.97539 0.88703 1.01222 1.20288 0.87259 0.93414 0.91036 1.68016 1.13794 1.22933 1.12693 1.22871 1.00583 0.88317 0.93671 1.22031 0.93224 1.01153 1.04384 1.21410 0.96108 0.95557 0.96422 1.22037 0.86891 0.96426 1.06648 1.98353 1.11397 1.96411 1.95440 1.21074 1.01762 0.91441 1.04502 0.90983 0.86242 0.89001 0.87949 0.82493 0.84522 0.84315 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.66 10.96 55.55 0.61 -20.05 15 2 C 0.08 1.92 5.14 -17.35 -0.09 1.83 15 3 Si 0.91 18.83 29.60 -169.99 -5.03 13.80 15 4 H -0.26 -5.38 7.11 56.52 0.40 -4.97 15 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 6 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 7 C -0.46 -12.42 9.05 -37.73 -0.34 -12.76 15 8 H 0.08 2.04 7.91 -52.49 -0.42 1.63 15 9 C 0.10 2.66 5.57 -106.87 -0.60 2.07 15 10 C -0.14 -3.75 8.69 -38.82 -0.34 -4.09 15 11 C -0.11 -2.66 10.01 -39.72 -0.40 -3.06 15 12 C -0.20 -4.55 8.17 -38.96 -0.32 -4.87 15 13 C -0.05 -1.24 5.56 -104.98 -0.58 -1.82 15 14 C 0.22 4.35 6.47 -82.91 -0.54 3.82 15 15 N -0.47 -8.82 9.95 -9.75 -0.10 -8.91 15 16 C 0.10 1.47 11.17 -17.57 -0.20 1.27 15 17 C -0.19 -2.24 10.11 -39.39 -0.40 -2.64 15 18 C -0.07 -0.92 9.97 -39.28 -0.39 -1.31 15 19 C -0.09 -1.56 6.28 -39.02 -0.25 -1.80 15 20 Cl -0.04 -0.75 24.75 -51.86 -1.28 -2.03 15 21 C -0.17 -4.25 9.32 -38.52 -0.36 -4.61 15 22 H 0.28 6.57 8.30 -40.82 -0.34 6.23 15 23 H 0.12 3.18 6.15 -52.48 -0.32 2.86 15 24 H 0.09 1.91 8.06 -52.49 -0.42 1.49 15 25 H 0.10 2.08 5.58 -52.49 -0.29 1.79 15 26 H 0.16 1.66 8.06 -52.49 -0.42 1.24 15 27 H 0.14 1.11 8.06 -52.48 -0.42 0.69 15 28 H 0.14 1.43 8.06 -52.49 -0.42 1.01 15 29 H 0.10 2.51 7.95 -52.48 -0.42 2.10 15 LS Contribution 270.20 15.07 4.07 4.07 Total: -1.00 -28.63 270.20 -8.79 -37.43 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -2.27 Total: 3.67 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -4.79 Total: -27.98 kcal Atomic # 7 Polarization: -29.48 SS G_CDS: 0.51 Total: -28.97 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.28 Total: -2.03 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.63 -8.79 -37.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706720768.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.111 kcal (2) G-P(sol) polarization free energy of solvation -28.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds