Wall clock time and date at job start Mon Mar 30 2020 06:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86808 * 119.99955 * 2 1 4 4 H 1.48503 * 109.46929 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47005 * 299.99965 * 3 2 1 6 6 H 1.48497 * 109.46762 * 60.00152 * 3 2 1 7 7 C 1.39933 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00192 * 197.90437 * 7 2 1 9 9 C 1.41425 * 119.99827 * 17.91341 * 7 2 1 10 10 C 1.40788 * 120.18887 * 24.47126 * 9 7 2 11 11 C 1.37677 * 119.99812 * 180.02562 * 10 9 7 12 12 C 1.38431 * 120.38490 * 359.71839 * 11 10 9 13 13 C 1.39707 * 120.36921 * 0.56310 * 12 11 10 14 14 C 1.48353 * 119.99670 * 179.71340 * 13 12 11 15 15 N 1.32669 * 119.73663 * 144.72657 * 14 13 12 16 16 C 1.31730 * 121.63366 * 179.97438 * 15 14 13 17 17 C 1.38294 * 120.91952 * 0.02562 * 16 15 14 18 18 C 1.38712 * 119.37983 * 359.97438 * 17 16 15 19 19 C 1.38571 * 118.49759 * 359.73731 * 18 17 16 20 20 Cl 1.73599 * 120.48219 * 180.28305 * 19 18 17 21 21 C 1.38798 * 119.99759 * 359.43798 * 13 12 11 22 22 H 0.97001 * 120.00253 * 0.02562 * 1 2 3 23 23 H 1.08008 * 119.99634 * 0.04417 * 10 9 7 24 24 H 1.08000 * 119.80712 * 180.02562 * 11 10 9 25 25 H 1.07995 * 119.81456 * 180.30490 * 12 11 10 26 26 H 1.07999 * 119.53970 * 180.02562 * 16 15 14 27 27 H 1.08004 * 120.31276 * 179.97438 * 17 16 15 28 28 H 1.08001 * 120.75310 * 179.97438 * 18 17 16 29 29 H 1.08005 * 120.18708 * 180.30080 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0487 -1.2344 0.2881 9 6 1.3522 -2.4071 -0.3756 10 6 0.2223 -2.3609 -1.2142 11 6 -0.4133 -3.5269 -1.5776 12 6 0.0552 -4.7493 -1.1277 13 6 1.1716 -4.8130 -0.2902 14 6 1.6629 -6.1271 0.1922 15 7 2.9653 -6.3257 0.3485 16 6 3.4424 -7.4772 0.7749 17 6 2.5965 -8.5288 1.0768 18 6 1.2271 -8.3650 0.9279 19 6 0.7521 -7.1414 0.4834 20 17 -0.9523 -6.8777 0.2857 21 6 1.8245 -3.6473 0.0858 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1457 -1.4109 -1.5727 24 1 -1.2796 -3.4879 -2.2213 25 1 -0.4475 -5.6586 -1.4224 26 1 4.5089 -7.6017 0.8903 27 1 2.9982 -9.4688 1.4253 28 1 0.5463 -9.1715 1.1568 29 1 2.6907 -3.6934 0.7292 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706720768.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:08 Heat of formation + Delta-G solvation = 30.272436 kcal Electronic energy + Delta-G solvation = -15887.068358 eV Core-core repulsion = 13185.799374 eV Total energy + Delta-G solvation = -2701.268984 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.23686 -39.14504 -37.59144 -35.67151 -33.64187 -32.84703 -31.76064 -29.93731 -27.26126 -24.87367 -24.47294 -22.39821 -22.10448 -19.35204 -17.86218 -17.52388 -17.22850 -16.69654 -16.54089 -15.52707 -15.40739 -14.84423 -14.58282 -14.16551 -14.01527 -13.62505 -13.21435 -13.10786 -12.88731 -12.78226 -12.61342 -12.33090 -11.93149 -11.43471 -11.27978 -11.00024 -10.81265 -10.41286 -10.09042 -9.38973 -8.96063 -8.63156 -6.34085 -0.23510 0.15833 0.98242 1.09796 1.15821 1.38026 1.50899 1.53828 2.21866 2.63019 2.84864 3.30316 3.63381 3.86637 3.88183 4.03941 4.40590 4.47302 4.55977 4.69259 4.93165 5.01546 5.02685 5.11266 5.27098 5.40489 5.55168 5.67250 5.96506 6.05919 6.11682 6.32097 6.65947 6.92577 6.98946 6.99555 8.34653 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.030513 B = 0.005718 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.409602 B = 4895.852998 C = 5588.140098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.265 1.265 7 C -0.503 4.503 8 H 0.070 0.930 9 C 0.073 3.927 10 C -0.172 4.172 11 C -0.114 4.114 12 C -0.201 4.201 13 C -0.048 4.048 14 C 0.171 3.829 15 N -0.502 5.502 16 C 0.094 3.906 17 C -0.154 4.154 18 C -0.064 4.064 19 C -0.099 4.099 20 Cl -0.049 7.049 21 C -0.194 4.194 22 H 0.288 0.712 23 H 0.106 0.894 24 H 0.118 0.882 25 H 0.127 0.873 26 H 0.192 0.808 27 H 0.191 0.809 28 H 0.177 0.823 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 -14.091 1.707 14.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.190 1.190 7 C -0.532 4.532 8 H 0.089 0.911 9 C 0.071 3.929 10 C -0.192 4.192 11 C -0.132 4.132 12 C -0.221 4.221 13 C -0.048 4.048 14 C 0.036 3.964 15 N -0.212 5.212 16 C -0.064 4.064 17 C -0.174 4.174 18 C -0.090 4.090 19 C -0.128 4.128 20 Cl -0.020 7.020 21 C -0.215 4.215 22 H 0.099 0.901 23 H 0.124 0.876 24 H 0.135 0.865 25 H 0.144 0.856 26 H 0.209 0.791 27 H 0.208 0.792 28 H 0.194 0.806 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.911 -13.247 1.520 13.470 hybrid contribution -0.510 0.449 0.210 0.711 sum 1.400 -12.798 1.730 12.990 Atomic orbital electron populations 1.69869 1.08905 1.30486 1.36011 1.26719 0.95512 1.04367 0.91182 0.85168 0.79314 0.76200 0.79055 1.18449 1.18607 1.18965 1.19781 0.98220 0.92553 1.42678 0.91132 1.17880 0.92380 0.92655 0.89989 1.21413 0.99431 0.97383 1.00927 1.20912 0.99457 0.92601 1.00245 1.21066 0.98939 0.97684 1.04429 1.18301 0.96758 0.90046 0.99736 1.19948 0.88670 0.93012 0.94812 1.67879 1.13586 1.25760 1.13926 1.23576 1.02728 0.87454 0.92679 1.22622 0.92182 1.02125 1.00430 1.21915 0.97541 0.94748 0.94752 1.22155 0.86284 0.97193 1.07173 1.98344 1.11628 1.96558 1.95492 1.21085 1.02440 0.92227 1.05729 0.90091 0.87646 0.86451 0.85562 0.79094 0.79206 0.80563 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.38 10.96 21.82 0.24 -44.14 15 2 C 0.04 1.91 5.14 85.25 0.44 2.35 15 3 Si 0.98 39.57 29.60 68.60 2.03 41.60 15 4 H -0.26 -10.40 7.11 99.48 0.71 -9.70 15 5 H -0.26 -10.01 7.11 99.48 0.71 -9.31 15 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 15 7 C -0.50 -28.58 9.05 23.47 0.21 -28.36 15 8 H 0.07 3.94 7.91 -2.91 -0.02 3.92 15 9 C 0.07 4.18 5.57 -21.32 -0.12 4.06 15 10 C -0.17 -9.38 8.69 22.76 0.20 -9.18 15 11 C -0.11 -5.46 10.01 22.18 0.22 -5.24 15 12 C -0.20 -9.16 8.17 22.67 0.19 -8.97 15 13 C -0.05 -2.27 5.56 -20.10 -0.11 -2.38 15 14 C 0.17 6.85 6.47 41.99 0.27 7.12 15 15 N -0.50 -18.69 9.95 -184.77 -1.84 -20.53 15 16 C 0.09 2.35 11.17 84.72 0.95 3.29 15 17 C -0.15 -2.86 10.11 22.40 0.23 -2.64 15 18 C -0.06 -1.42 9.97 22.46 0.22 -1.20 15 19 C -0.10 -3.20 6.28 22.63 0.14 -3.06 15 20 Cl -0.05 -1.56 24.75 -2.72 -0.07 -1.63 15 21 C -0.19 -10.47 9.32 22.96 0.21 -10.26 15 22 H 0.29 13.88 8.30 -92.71 -0.77 13.11 15 23 H 0.11 5.93 6.15 -2.91 -0.02 5.92 15 24 H 0.12 4.88 8.06 -2.91 -0.02 4.85 15 25 H 0.13 5.06 5.58 -2.91 -0.02 5.04 15 26 H 0.19 3.27 8.06 -2.91 -0.02 3.25 15 27 H 0.19 1.59 8.06 -2.91 -0.02 1.57 15 28 H 0.18 2.62 8.06 -2.91 -0.02 2.59 15 29 H 0.09 4.79 7.95 -2.91 -0.02 4.77 15 Total: -1.00 -67.18 270.20 4.59 -62.59 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 1.18 Total: 16.57 kcal Atomic # 6 Polarization: -57.52 SS G_CDS: 3.05 Total: -54.47 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: -1.60 Total: -64.67 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.07 Total: -1.63 kcal Total: -67.18 4.59 -62.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706720768.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.864 kcal (2) G-P(sol) polarization free energy of solvation -67.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds