Wall clock time and date at job start Mon Mar 30 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30369 * 1 3 3 Si 1.86805 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47092 * 274.97658 * 3 2 1 5 5 H 1.48496 * 109.47201 * 34.98032 * 3 2 1 6 6 H 1.48502 * 109.46875 * 154.97786 * 3 2 1 7 7 C 1.40719 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00114 * 173.77235 * 7 2 1 9 9 C 1.40035 * 119.99906 * 353.77204 * 7 2 1 10 10 N 1.32452 * 126.54818 * 5.80822 * 9 7 2 11 11 C 1.30848 * 120.23143 * 179.69025 * 10 9 7 12 12 O 1.22162 * 122.56777 * 180.34611 * 11 10 9 13 13 C 1.47393 * 114.85436 * 0.57700 * 11 10 9 14 14 C 1.37789 * 128.15936 * 179.76334 * 13 11 10 15 15 C 1.46494 * 119.99651 * 351.86358 * 14 13 11 16 16 C 1.40295 * 120.20649 * 322.59817 * 15 14 13 17 17 C 1.37743 * 119.78412 * 179.74455 * 16 15 14 18 18 C 1.38537 * 120.20903 * 0.54016 * 17 16 15 19 19 C 1.38536 * 120.42493 * 359.71243 * 18 17 16 20 20 C 1.37747 * 120.20790 * 0.02888 * 19 18 17 21 21 S 1.77276 * 126.54826 * 185.83332 * 9 7 2 22 22 H 0.96999 * 119.99902 * 359.97438 * 1 2 3 23 23 H 1.07992 * 120.00304 * 171.57988 * 14 13 11 24 24 H 1.08004 * 120.10528 * 0.02562 * 16 15 14 25 25 H 1.07996 * 119.89524 * 180.23604 * 17 16 15 26 26 H 1.08001 * 119.78574 * 179.69700 * 18 17 16 27 27 H 1.07999 * 119.89415 * 179.97438 * 19 18 17 28 28 H 1.07996 * 120.10622 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3037 0.0000 0.0000 3 14 2.2377 1.6178 0.0000 4 1 2.3800 2.1072 -1.3948 5 1 1.4918 2.6200 0.8026 6 1 3.5839 1.4121 0.5922 7 6 2.0073 -1.2186 0.0005 8 1 3.0825 -1.2215 -0.1009 9 6 1.3133 -2.4277 0.1327 10 7 -0.0017 -2.5838 0.1572 11 6 -0.5213 -3.7783 0.2806 12 8 -1.7272 -3.9720 0.3019 13 6 0.4603 -4.8717 0.3971 14 6 0.2189 -6.2206 0.5418 15 6 -1.1458 -6.6996 0.7745 16 6 -2.0235 -5.9640 1.5849 17 6 -3.3065 -6.4198 1.7936 18 6 -3.7275 -7.6061 1.2152 19 6 -2.8664 -8.3421 0.4177 20 6 -1.5814 -7.8998 0.1931 21 16 2.0271 -4.0418 0.2996 22 1 -0.4850 0.8400 0.0004 23 1 1.0351 -6.9250 0.4791 24 1 -1.6957 -5.0410 2.0400 25 1 -3.9848 -5.8530 2.4140 26 1 -4.7334 -7.9596 1.3874 27 1 -3.2035 -9.2660 -0.0286 28 1 -0.9113 -8.4751 -0.4285 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714559385.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:38 Heat of formation + Delta-G solvation = 26.920675 kcal Electronic energy + Delta-G solvation = -15815.927493 eV Core-core repulsion = 13116.556872 eV Total energy + Delta-G solvation = -2699.370621 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.85133 -37.77678 -35.26643 -33.31339 -32.84531 -30.43687 -29.14920 -27.91804 -23.57180 -22.58484 -21.89971 -20.69919 -18.84304 -17.08132 -16.84239 -16.01794 -15.52801 -14.75454 -14.52591 -13.99222 -13.70646 -13.57072 -13.15306 -12.86637 -12.62799 -12.20416 -11.85129 -11.79170 -11.56135 -10.93039 -10.79297 -10.70499 -10.58109 -10.34965 -9.82876 -9.23924 -8.73673 -8.30856 -8.08029 -7.68992 -7.08636 -6.78689 -5.71921 1.04466 1.95745 2.10555 2.40074 2.63878 2.72624 2.79924 3.02851 3.14672 3.45381 4.22132 4.37016 5.25954 5.28512 5.34944 5.38315 5.44222 5.62487 5.89753 6.01206 6.12543 6.32764 6.40823 6.46668 6.54909 6.69876 6.90894 7.03915 7.20380 7.37023 7.48573 7.50083 7.81055 9.34135 9.42552 9.90611 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.042033 B = 0.005291 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.988397 B = 5290.663398 C = 5829.781889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.646 5.646 2 C 0.049 3.951 3 Si 0.935 3.065 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.250 1.250 7 C -0.307 4.307 8 H 0.114 0.886 9 C 0.285 3.715 10 N -0.622 5.622 11 C 0.507 3.493 12 O -0.539 6.539 13 C -0.181 4.181 14 C -0.047 4.047 15 C -0.055 4.055 16 C -0.035 4.035 17 C -0.133 4.133 18 C -0.119 4.119 19 C -0.141 4.141 20 C -0.107 4.107 21 S -0.197 6.197 22 H 0.298 0.702 23 H 0.125 0.875 24 H 0.127 0.873 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.594 -4.719 1.539 5.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.264 5.264 2 C -0.187 4.187 3 Si 0.756 3.244 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.173 1.173 7 C -0.343 4.343 8 H 0.131 0.869 9 C 0.042 3.958 10 N -0.371 5.371 11 C 0.286 3.714 12 O -0.424 6.424 13 C -0.301 4.301 14 C -0.077 4.077 15 C -0.057 4.057 16 C -0.054 4.054 17 C -0.151 4.151 18 C -0.138 4.138 19 C -0.159 4.159 20 C -0.125 4.125 21 S 0.050 5.950 22 H 0.110 0.890 23 H 0.143 0.857 24 H 0.145 0.855 25 H 0.134 0.866 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.476 -4.554 1.524 5.024 hybrid contribution -0.322 0.372 -0.152 0.515 sum 1.154 -4.182 1.372 4.550 Atomic orbital electron populations 1.69876 1.08054 1.31097 1.17374 1.26549 0.95444 1.02179 0.94576 0.85818 0.80467 0.78024 0.80131 1.18332 1.18934 1.17345 1.19821 0.96131 0.87794 1.30516 0.86851 1.24242 0.89002 0.91465 0.91048 1.67237 1.09212 1.19885 1.40805 1.19624 0.89822 0.82845 0.79077 1.90712 1.14697 1.84545 1.52414 1.27123 0.97743 0.99530 1.05711 1.21679 0.94795 0.91813 0.99396 1.18858 0.93429 0.94875 0.98564 1.21561 0.92772 0.96240 0.94784 1.20984 0.96313 0.96445 1.01371 1.21166 0.99006 0.95511 0.98085 1.20835 0.94178 1.00239 1.00677 1.21222 0.96196 0.95682 0.99428 1.84885 1.11361 1.11565 1.87182 0.88999 0.85736 0.85516 0.86569 0.86873 0.86697 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -15.46 11.97 55.59 0.67 -14.79 15 2 C 0.05 1.05 5.50 -17.24 -0.09 0.96 15 3 Si 0.94 15.03 29.57 -169.99 -5.03 10.00 15 4 H -0.26 -4.09 7.11 56.52 0.40 -3.69 15 5 H -0.27 -4.21 7.11 56.52 0.40 -3.81 15 6 H -0.25 -3.86 7.11 56.52 0.40 -3.46 15 7 C -0.31 -6.99 9.45 -37.97 -0.36 -7.34 15 8 H 0.11 2.23 7.86 -52.49 -0.41 1.82 15 9 C 0.28 7.30 7.23 -16.61 -0.12 7.18 15 10 N -0.62 -17.78 8.65 -12.40 -0.11 -17.89 15 11 C 0.51 14.13 7.37 -14.25 -0.10 14.03 15 12 O -0.54 -15.73 13.63 4.77 0.07 -15.66 15 13 C -0.18 -4.32 6.44 -36.02 -0.23 -4.55 15 14 C -0.05 -0.95 9.95 -36.42 -0.36 -1.31 15 15 C -0.05 -1.09 5.42 -105.03 -0.57 -1.66 15 16 C -0.04 -0.73 6.99 -38.99 -0.27 -1.00 15 17 C -0.13 -2.38 10.03 -39.65 -0.40 -2.78 15 18 C -0.12 -1.85 10.05 -39.36 -0.40 -2.25 15 19 C -0.14 -2.14 10.03 -39.65 -0.40 -2.53 15 20 C -0.11 -1.78 9.81 -38.99 -0.38 -2.16 15 21 S -0.20 -4.50 23.19 -107.50 -2.49 -6.99 15 22 H 0.30 6.21 8.29 -40.82 -0.34 5.87 15 23 H 0.12 2.12 8.06 -52.49 -0.42 1.70 15 24 H 0.13 2.94 6.15 -52.48 -0.32 2.62 15 25 H 0.12 1.86 8.06 -52.49 -0.42 1.43 15 26 H 0.11 1.41 8.06 -52.49 -0.42 0.99 15 27 H 0.11 1.38 8.06 -52.49 -0.42 0.95 15 28 H 0.12 1.65 8.06 -52.49 -0.42 1.23 15 LS Contribution 269.18 15.07 4.06 4.06 Total: -1.00 -30.52 269.18 -8.51 -39.03 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -1.98 Total: 5.65 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -3.69 Total: -3.42 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.56 Total: -32.68 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.07 Total: -15.66 kcal Atomic # 14 Polarization: 15.03 SS G_CDS: -5.03 Total: 10.00 kcal Atomic # 16 Polarization: -4.50 SS G_CDS: -2.49 Total: -6.99 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.52 -8.51 -39.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714559385.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.953 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds