Wall clock time and date at job start Mon Mar 30 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30369 * 1 3 3 Si 1.86805 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47092 * 274.97658 * 3 2 1 5 5 H 1.48496 * 109.47201 * 34.98032 * 3 2 1 6 6 H 1.48502 * 109.46875 * 154.97786 * 3 2 1 7 7 C 1.40719 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00114 * 173.77235 * 7 2 1 9 9 C 1.40035 * 119.99906 * 353.77204 * 7 2 1 10 10 N 1.32452 * 126.54818 * 5.80822 * 9 7 2 11 11 C 1.30848 * 120.23143 * 179.69025 * 10 9 7 12 12 O 1.22162 * 122.56777 * 180.34611 * 11 10 9 13 13 C 1.47393 * 114.85436 * 0.57700 * 11 10 9 14 14 C 1.37789 * 128.15936 * 179.76334 * 13 11 10 15 15 C 1.46494 * 119.99651 * 351.86358 * 14 13 11 16 16 C 1.40295 * 120.20649 * 322.59817 * 15 14 13 17 17 C 1.37743 * 119.78412 * 179.74455 * 16 15 14 18 18 C 1.38537 * 120.20903 * 0.54016 * 17 16 15 19 19 C 1.38536 * 120.42493 * 359.71243 * 18 17 16 20 20 C 1.37747 * 120.20790 * 0.02888 * 19 18 17 21 21 S 1.77276 * 126.54826 * 185.83332 * 9 7 2 22 22 H 0.96999 * 119.99902 * 359.97438 * 1 2 3 23 23 H 1.07992 * 120.00304 * 171.57988 * 14 13 11 24 24 H 1.08004 * 120.10528 * 0.02562 * 16 15 14 25 25 H 1.07996 * 119.89524 * 180.23604 * 17 16 15 26 26 H 1.08001 * 119.78574 * 179.69700 * 18 17 16 27 27 H 1.07999 * 119.89415 * 179.97438 * 19 18 17 28 28 H 1.07996 * 120.10622 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3037 0.0000 0.0000 3 14 2.2377 1.6178 0.0000 4 1 2.3800 2.1072 -1.3948 5 1 1.4918 2.6200 0.8026 6 1 3.5839 1.4121 0.5922 7 6 2.0073 -1.2186 0.0005 8 1 3.0825 -1.2215 -0.1009 9 6 1.3133 -2.4277 0.1327 10 7 -0.0017 -2.5838 0.1572 11 6 -0.5213 -3.7783 0.2806 12 8 -1.7272 -3.9720 0.3019 13 6 0.4603 -4.8717 0.3971 14 6 0.2189 -6.2206 0.5418 15 6 -1.1458 -6.6996 0.7745 16 6 -2.0235 -5.9640 1.5849 17 6 -3.3065 -6.4198 1.7936 18 6 -3.7275 -7.6061 1.2152 19 6 -2.8664 -8.3421 0.4177 20 6 -1.5814 -7.8998 0.1931 21 16 2.0271 -4.0418 0.2996 22 1 -0.4850 0.8400 0.0004 23 1 1.0351 -6.9250 0.4791 24 1 -1.6957 -5.0410 2.0400 25 1 -3.9848 -5.8530 2.4140 26 1 -4.7334 -7.9596 1.3874 27 1 -3.2035 -9.2660 -0.0286 28 1 -0.9113 -8.4751 -0.4285 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714559385.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:38 Heat of formation + Delta-G solvation = 7.021664 kcal Electronic energy + Delta-G solvation = -15816.790379 eV Core-core repulsion = 13116.556872 eV Total energy + Delta-G solvation = -2700.233507 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47958 -39.42953 -37.09163 -35.17736 -34.40720 -31.78810 -30.82994 -29.59468 -25.21750 -24.36056 -23.26666 -22.29591 -20.60749 -18.76492 -18.53170 -17.63343 -17.07826 -16.26412 -16.02610 -15.72617 -15.48535 -15.18261 -14.67829 -14.25115 -14.10807 -13.62320 -13.46362 -13.34535 -13.22455 -12.52973 -12.33273 -12.09396 -11.99937 -11.85832 -11.44608 -10.94842 -10.56747 -9.73907 -9.70287 -9.44997 -8.84969 -8.56650 -7.56948 -0.59605 0.45827 0.64425 0.70553 1.16087 1.28465 1.39775 1.59097 1.63551 2.06932 2.51951 2.98022 3.32716 3.61356 3.93669 4.06534 4.15065 4.31113 4.32392 4.57200 4.61145 4.67410 4.88542 4.97916 5.14193 5.23642 5.57625 5.60899 5.65091 5.71523 5.78260 6.00391 6.15329 7.37348 7.79197 8.02080 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.042033 B = 0.005291 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.988397 B = 5290.663398 C = 5829.781889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.696 5.696 2 C 0.005 3.995 3 Si 1.024 2.976 4 H -0.250 1.250 5 H -0.263 1.263 6 H -0.232 1.232 7 C -0.299 4.299 8 H 0.146 0.854 9 C 0.236 3.764 10 N -0.670 5.670 11 C 0.488 3.512 12 O -0.583 6.583 13 C -0.236 4.236 14 C -0.001 4.001 15 C -0.096 4.096 16 C -0.059 4.059 17 C -0.152 4.152 18 C -0.106 4.106 19 C -0.136 4.136 20 C -0.098 4.098 21 S -0.164 6.164 22 H 0.308 0.692 23 H 0.163 0.837 24 H 0.084 0.916 25 H 0.123 0.877 26 H 0.152 0.848 27 H 0.160 0.840 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.652 -6.034 0.961 6.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.315 5.315 2 C -0.227 4.227 3 Si 0.838 3.162 4 H -0.173 1.173 5 H -0.187 1.187 6 H -0.154 1.154 7 C -0.334 4.334 8 H 0.163 0.837 9 C -0.003 4.003 10 N -0.422 5.422 11 C 0.269 3.731 12 O -0.472 6.472 13 C -0.355 4.355 14 C -0.031 4.031 15 C -0.099 4.099 16 C -0.078 4.078 17 C -0.170 4.170 18 C -0.124 4.124 19 C -0.153 4.153 20 C -0.116 4.116 21 S 0.083 5.917 22 H 0.120 0.880 23 H 0.180 0.820 24 H 0.102 0.898 25 H 0.141 0.859 26 H 0.170 0.830 27 H 0.178 0.822 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.570 -5.903 0.948 6.507 hybrid contribution -0.748 0.670 0.053 1.005 sum 1.822 -5.233 1.001 5.631 Atomic orbital electron populations 1.69985 1.10636 1.33035 1.17833 1.27951 0.95987 1.06001 0.92753 0.84582 0.79260 0.71817 0.80556 1.17336 1.18711 1.15364 1.20681 0.97758 0.87726 1.27234 0.83659 1.24703 0.88992 0.93529 0.93109 1.67146 1.11353 1.21576 1.42163 1.19892 0.90063 0.84067 0.79059 1.90641 1.16073 1.85355 1.55157 1.26906 0.97062 1.00091 1.11460 1.22295 0.96356 0.91005 0.93407 1.19087 0.93420 0.96807 1.00541 1.21384 0.94624 0.95375 0.96397 1.21207 0.95357 0.98035 1.02386 1.21643 1.00795 0.93798 0.96158 1.21390 0.93166 1.01346 0.99437 1.21622 0.97586 0.94001 0.98386 1.84303 1.10210 1.09488 1.87686 0.87978 0.81982 0.89785 0.85857 0.82991 0.82205 0.83239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -34.58 11.97 21.96 0.26 -34.32 15 2 C 0.01 0.22 5.50 85.52 0.47 0.69 15 3 Si 1.02 29.40 29.57 68.60 2.03 31.43 15 4 H -0.25 -6.81 7.11 99.48 0.71 -6.10 15 5 H -0.26 -7.43 7.11 99.48 0.71 -6.72 15 6 H -0.23 -5.94 7.11 99.48 0.71 -5.23 15 7 C -0.30 -13.68 9.45 23.31 0.22 -13.46 15 8 H 0.15 5.49 7.86 -2.91 -0.02 5.47 15 9 C 0.24 12.59 7.23 85.04 0.61 13.20 15 10 N -0.67 -40.88 8.65 -313.29 -2.71 -43.59 15 11 C 0.49 29.19 7.37 87.25 0.64 29.83 15 12 O -0.58 -36.90 13.63 -5.85 -0.08 -36.98 15 13 C -0.24 -11.73 6.44 24.58 0.16 -11.57 15 14 C 0.00 -0.06 9.95 24.32 0.24 0.19 15 15 C -0.10 -3.81 5.42 -20.13 -0.11 -3.92 15 16 C -0.06 -2.57 6.99 22.65 0.16 -2.41 15 17 C -0.15 -5.48 10.03 22.22 0.22 -5.25 15 18 C -0.11 -2.98 10.05 22.41 0.23 -2.76 15 19 C -0.14 -3.54 10.03 22.22 0.22 -3.31 15 20 C -0.10 -2.96 9.81 22.65 0.22 -2.74 15 21 S -0.16 -7.66 23.19 -56.49 -1.31 -8.97 15 22 H 0.31 13.31 8.29 -92.71 -0.77 12.55 15 23 H 0.16 5.17 8.06 -2.91 -0.02 5.14 15 24 H 0.08 4.33 6.15 -2.91 -0.02 4.31 15 25 H 0.12 4.08 8.06 -2.91 -0.02 4.06 15 26 H 0.15 3.09 8.06 -2.91 -0.02 3.07 15 27 H 0.16 2.80 8.06 -2.91 -0.02 2.78 15 28 H 0.15 3.52 8.06 -2.91 -0.02 3.50 15 Total: -1.00 -73.82 269.18 2.68 -71.14 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 1.19 Total: 22.81 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 3.29 Total: -1.53 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -2.45 Total: -77.91 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.08 Total: -36.98 kcal Atomic # 14 Polarization: 29.40 SS G_CDS: 2.03 Total: 31.43 kcal Atomic # 16 Polarization: -7.66 SS G_CDS: -1.31 Total: -8.97 kcal Total: -73.82 2.68 -71.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714559385.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.160 kcal (2) G-P(sol) polarization free energy of solvation -73.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds