Wall clock time and date at job start Mon Mar 30 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00453 * 2 1 4 4 H 1.48493 * 109.47624 * 240.00089 * 3 2 1 5 5 H 1.48501 * 109.46744 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47143 * 119.99568 * 3 2 1 7 7 C 1.37878 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47065 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47022 * 180.02562 * 10 9 7 12 12 S 1.81001 * 109.47282 * 180.02562 * 11 10 9 13 13 C 1.76201 * 100.00084 * 179.97438 * 12 11 10 14 14 N 1.29764 * 124.95219 * 180.02562 * 13 12 11 15 15 C 1.32092 * 116.85567 * 179.97438 * 14 13 12 16 16 C 1.50692 * 122.70802 * 179.97438 * 15 14 13 17 17 O 1.42905 * 109.47270 * 180.02562 * 16 15 14 18 18 C 1.33337 * 114.58692 * 359.97438 * 15 14 13 19 19 S 1.70961 * 124.95494 * 359.97116 * 13 12 11 20 20 H 0.97006 * 119.99471 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47406 * 59.99941 * 9 7 2 22 22 H 1.08998 * 109.46959 * 300.00165 * 9 7 2 23 23 H 1.08994 * 109.47552 * 60.00283 * 10 9 7 24 24 H 1.08998 * 109.47220 * 299.99825 * 10 9 7 25 25 H 1.08999 * 109.47514 * 59.99721 * 11 10 9 26 26 H 1.09006 * 109.47156 * 299.99296 * 11 10 9 27 27 H 1.09006 * 109.47290 * 300.02038 * 16 15 14 28 28 H 1.09003 * 109.47539 * 60.02137 * 16 15 14 29 29 H 0.96705 * 113.99958 * 179.97438 * 17 16 15 30 30 H 1.07999 * 125.95110 * 179.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 16 2.6562 -6.3629 -0.0004 13 6 1.5360 -7.7230 -0.0005 14 7 1.8844 -8.9730 0.0003 15 6 0.9094 -9.8642 0.0006 16 6 1.1639 -11.3495 0.0011 17 8 -0.0837 -12.0465 0.0007 18 6 -0.3181 -9.3436 0.0005 19 16 -0.1683 -7.5883 -0.0005 20 1 -0.4850 0.8401 -0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8897 23 1 2.8718 -3.6045 0.8894 24 1 2.8718 -3.6044 -0.8905 25 1 0.8537 -5.0446 -0.8913 26 1 0.8532 -5.0451 0.8887 27 1 1.7320 -11.6211 -0.8887 28 1 1.7314 -11.6207 0.8913 29 1 0.0039 -13.0096 0.0005 30 1 -1.2432 -9.9008 0.0002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723370960.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:59 Heat of formation + Delta-G solvation = -22.932438 kcal Electronic energy + Delta-G solvation = -13945.801526 eV Core-core repulsion = 11379.713063 eV Total energy + Delta-G solvation = -2566.088463 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.84684 -36.93679 -34.63127 -32.15334 -31.01313 -27.74842 -27.25699 -25.07534 -23.39484 -20.66545 -19.52143 -18.80941 -17.60540 -16.50940 -16.09294 -15.71666 -15.31509 -14.89293 -14.58910 -13.99418 -13.89595 -13.58133 -12.73501 -12.55024 -11.99626 -11.95366 -11.33198 -11.14370 -10.92362 -10.74559 -10.71054 -10.45626 -9.93739 -9.83341 -9.62639 -9.44042 -9.20484 -9.17470 -8.41544 -7.52026 -6.06611 -4.09814 0.56377 1.05960 1.21108 1.66899 2.51985 2.56819 3.30893 3.35390 3.37925 3.55847 4.41236 4.71886 4.99062 5.11308 5.12763 5.22243 5.30069 5.33686 5.47930 5.85447 5.89030 6.35980 6.51940 6.86887 7.18946 7.49641 7.55438 7.65881 7.91099 8.31422 8.96065 9.54828 11.04587 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.066398 B = 0.003418 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.597662 B = 8189.348704 C = 8579.896297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.094 4.094 11 C -0.121 4.121 12 S 0.000 6.000 13 C 0.027 3.973 14 N -0.462 5.462 15 C 0.065 3.935 16 C 0.158 3.842 17 O -0.570 6.570 18 C -0.242 4.242 19 S 0.143 5.857 20 H 0.262 0.738 21 H 0.020 0.980 22 H 0.020 0.980 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.388 0.612 30 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 -20.848 -0.003 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.134 4.134 11 C -0.270 4.270 12 S 0.234 5.766 13 C -0.358 4.358 14 N -0.182 5.182 15 C -0.069 4.069 16 C 0.077 3.923 17 O -0.376 6.376 18 C -0.385 4.385 19 S 0.393 5.607 20 H 0.072 0.928 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.236 0.764 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.626 -19.350 -0.002 19.360 hybrid contribution -0.630 -0.674 0.000 0.923 sum -0.004 -20.024 -0.002 20.024 Atomic orbital electron populations 1.69950 1.06079 1.26908 1.50414 1.25014 0.94872 0.99329 0.95120 0.86618 0.79564 0.82903 0.78708 1.20158 1.21257 1.20163 1.21151 0.93111 0.90747 1.51236 0.92493 1.19100 0.93676 0.90509 0.97716 1.21503 0.99350 0.90419 1.02080 1.24219 1.00369 0.96317 1.06133 1.85841 1.09200 0.91615 1.89909 1.28671 0.99798 1.00318 1.07060 1.66273 1.34791 0.98409 1.18777 1.19859 0.87759 0.96035 1.03271 1.20126 0.85243 0.85562 1.01352 1.86378 1.29994 1.23383 1.97848 1.26668 1.03135 0.95889 1.12825 1.84337 1.02742 1.04893 1.68680 0.92817 0.96166 0.96174 0.91836 0.91844 0.89028 0.89037 0.91408 0.91407 0.76395 0.80061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 10 C -0.09 -1.81 5.16 -26.73 -0.14 -1.95 16 11 C -0.12 -1.97 4.63 37.16 0.17 -1.79 16 12 S 0.00 0.00 22.31 -107.50 -2.40 -2.40 16 13 C 0.03 0.42 7.59 51.89 0.39 0.81 16 14 N -0.46 -7.17 10.59 -10.95 -0.12 -7.29 16 15 C 0.07 0.87 6.73 -84.20 -0.57 0.30 16 16 C 0.16 1.49 7.66 36.00 0.28 1.76 16 17 O -0.57 -4.65 12.57 -35.23 -0.44 -5.09 16 18 C -0.24 -3.08 10.54 29.02 0.31 -2.77 16 19 S 0.14 1.92 21.54 -107.50 -2.32 -0.39 16 20 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 21 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 25 H 0.09 1.44 7.97 -51.92 -0.41 1.03 16 26 H 0.09 1.44 7.97 -51.91 -0.41 1.02 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.39 1.11 9.12 45.56 0.42 1.53 16 30 H 0.18 2.00 7.56 -52.49 -0.40 1.60 16 LS Contribution 290.53 15.07 4.38 4.38 Total: -1.00 -31.30 290.53 -8.17 -39.47 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: -2.89 Total: -3.18 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -0.11 Total: -16.21 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.62 Total: -32.80 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.44 Total: -5.09 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -4.71 Total: -2.79 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.30 -8.17 -39.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723370960.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.539 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds